Wall clock time and date at job start Mon Mar 30 2020 02:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99756 * 2 1 4 4 C 1.53006 * 109.46809 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46863 * 64.48699 * 4 3 2 6 6 C 1.46894 * 110.99782 * 160.74755 * 5 4 3 7 7 C 1.50705 * 109.47193 * 287.97283 * 6 5 4 8 8 H 1.08003 * 119.99377 * 3.66195 * 7 6 5 9 9 C 1.37875 * 120.00092 * 183.66279 * 7 6 5 10 10 N 1.31506 * 120.00193 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99808 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47615 * 89.99786 * 11 9 7 13 13 H 1.48500 * 109.47044 * 209.99899 * 11 9 7 14 14 H 1.48500 * 109.47016 * 329.99804 * 11 9 7 15 15 C 1.38109 * 110.99613 * 284.69868 * 5 4 3 16 16 N 1.32857 * 120.81402 * 343.13403 * 15 5 4 17 17 C 1.32132 * 121.19074 * 179.97438 * 16 15 5 18 18 N 1.31502 * 122.64508 * 0.02562 * 17 16 15 19 19 C 1.33194 * 120.68788 * 359.97438 * 18 17 16 20 20 N 1.36312 * 134.62234 * 180.02562 * 19 18 17 21 21 H 0.97003 * 125.87208 * 359.94817 * 20 19 18 22 22 N 1.40063 * 108.25755 * 179.97438 * 20 19 18 23 23 C 1.30255 * 109.69213 * 359.97438 * 22 20 19 24 24 C 1.40810 * 120.81022 * 163.11894 * 15 5 4 25 25 H 1.09001 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47649 * 300.00293 * 1 2 3 27 27 H 1.09004 * 109.46811 * 60.00688 * 1 2 3 28 28 H 1.08993 * 109.47250 * 59.99591 * 3 2 1 29 29 H 1.08996 * 109.47008 * 299.99783 * 3 2 1 30 30 H 1.08992 * 109.47027 * 304.48396 * 4 3 2 31 31 H 1.08999 * 109.46862 * 184.47887 * 4 3 2 32 32 H 1.09004 * 109.47714 * 47.97251 * 6 5 4 33 33 H 1.08998 * 109.47222 * 167.97420 * 6 5 4 34 34 H 0.97000 * 120.00233 * 180.02562 * 10 9 7 35 35 H 1.08003 * 118.67396 * 180.28400 * 17 16 15 36 36 H 1.07995 * 125.76182 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9769 0.5511 -1.2491 6 6 5.3988 0.8198 -1.5017 7 6 5.5742 2.2622 -1.9016 8 1 4.7243 2.9288 -1.9047 9 6 6.8193 2.7309 -2.2633 10 7 7.8541 1.9193 -2.2590 11 14 7.0367 4.5190 -2.7582 12 1 7.3547 5.3303 -1.5558 13 1 8.1471 4.6299 -3.7380 14 1 5.7812 5.0182 -3.3743 15 6 3.7254 -0.8068 -1.2312 16 7 3.4721 -1.4371 -0.0894 17 6 3.2300 -2.7357 -0.0637 18 7 3.2244 -3.4779 -1.1493 19 6 3.4671 -2.9385 -2.3427 20 7 3.5314 -3.4205 -3.6162 21 1 3.3942 -4.3432 -3.8823 22 7 3.8301 -2.3546 -4.4743 23 6 3.9486 -1.2559 -3.7847 24 6 3.7307 -1.5570 -2.4228 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8513 0.5762 0.8479 31 1 3.9785 2.1773 0.0809 32 1 5.9727 0.6214 -0.5965 33 1 5.7534 0.1744 -2.3054 34 1 8.7302 2.2491 -2.5132 35 1 3.0244 -3.2059 0.8866 36 1 4.1764 -0.2799 -4.1868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301745300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:12 Heat of formation + Delta-G solvation = 90.035755 kcal Electronic energy + Delta-G solvation = -22037.051746 eV Core-core repulsion = 18752.090055 eV Total energy + Delta-G solvation = -3284.961691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.57852 -38.88782 -37.61123 -36.46927 -33.06448 -32.24279 -30.90318 -30.17111 -29.19353 -26.80158 -25.95677 -23.83189 -23.27617 -22.35895 -21.40986 -20.61629 -18.28463 -17.08589 -16.64357 -16.17537 -16.03987 -15.61250 -15.13813 -14.81068 -14.65121 -14.42728 -13.87075 -13.70072 -13.48662 -12.80941 -12.57809 -12.29647 -11.79669 -11.60258 -11.22052 -11.08836 -10.99453 -10.90102 -10.70236 -10.51861 -10.32810 -10.06640 -9.58146 -9.32642 -8.85849 -8.74570 -8.69756 -8.54139 -7.60638 -6.19452 -4.23964 1.10783 1.83472 2.71005 2.85436 3.23744 3.31241 3.33991 4.08467 4.19090 4.35636 4.38424 4.59148 4.66045 5.12985 5.19110 5.26390 5.37199 5.45142 5.49380 5.64856 5.74850 5.77574 5.78786 5.92220 6.24263 6.41712 6.55338 6.72612 6.90434 7.06062 7.14853 7.45540 7.53441 7.58350 7.73233 7.84634 7.91848 8.22273 8.71922 8.81995 9.41458 10.90823 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.006892 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.344137 B = 4061.478326 C = 5143.353603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.066 3.934 4 C 0.059 3.941 5 N -0.470 5.470 6 C 0.202 3.798 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.901 3.099 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.271 1.271 15 C 0.470 3.530 16 N -0.566 5.566 17 C 0.366 3.634 18 N -0.578 5.578 19 C 0.350 3.650 20 N -0.492 5.492 21 H 0.440 0.560 22 N -0.267 5.267 23 C 0.132 3.868 24 C -0.283 4.283 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.010 0.990 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.192 0.808 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 -5.052 3.043 12.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.011 4.011 4 C -0.068 4.068 5 N -0.187 5.187 6 C 0.081 3.919 7 C -0.557 4.557 8 H 0.087 0.913 9 C -0.141 4.141 10 N -0.530 5.530 11 Si 0.729 3.271 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.196 1.196 15 C 0.222 3.778 16 N -0.290 5.290 17 C 0.073 3.927 18 N -0.304 5.304 19 C 0.102 3.898 20 N -0.210 5.210 21 H 0.285 0.715 22 N -0.082 5.082 23 C -0.065 4.065 24 C -0.298 4.298 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.208 0.792 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.775 -5.934 2.214 12.499 hybrid contribution 0.326 1.091 0.153 1.149 sum -10.449 -4.843 2.368 11.758 Atomic orbital electron populations 1.22622 0.82991 1.01708 0.99174 1.88127 1.17776 1.27760 1.95139 1.22645 0.94259 0.84640 0.99517 1.22190 0.92407 1.01113 0.91104 1.59252 1.23169 1.03005 1.33318 1.19992 0.76167 0.98623 0.97131 1.21036 0.94462 0.93946 1.46306 0.91328 1.24962 0.95674 0.98220 0.95266 1.69945 1.00079 1.35360 1.47608 0.86438 0.77984 0.84273 0.78416 1.20579 1.21142 1.19613 1.19833 0.82264 0.89519 0.86184 1.68483 1.21715 1.10868 1.27916 1.24465 0.87338 0.85919 0.95011 1.67522 1.25698 1.40766 0.96383 1.19045 0.93362 0.89865 0.87538 1.45852 1.63396 1.10527 1.01206 0.71506 1.76952 1.20825 0.94368 1.16036 1.23932 0.94388 0.97912 0.90307 1.19693 1.19036 0.95331 0.95748 0.90700 0.94704 0.94858 0.93471 0.93160 0.91146 0.87791 0.97249 0.93893 0.92529 0.79179 0.78145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.01 7.63 -35.23 -0.27 -6.28 16 3 C 0.07 1.04 6.26 37.16 0.23 1.27 16 4 C 0.06 1.07 5.17 -3.82 -0.02 1.05 16 5 N -0.47 -9.64 4.39 -174.17 -0.76 -10.41 16 6 C 0.20 4.85 4.63 -4.98 -0.02 4.83 16 7 C -0.52 -13.13 8.41 -34.44 -0.29 -13.42 16 8 H 0.07 1.69 7.58 -52.48 -0.40 1.29 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 10 N -0.89 -24.81 13.29 55.43 0.74 -24.08 16 11 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 15 C 0.47 9.35 4.95 -154.86 -0.77 8.58 16 16 N -0.57 -10.44 6.79 -13.62 -0.09 -10.53 16 17 C 0.37 5.97 12.24 -92.11 -1.13 4.84 16 18 N -0.58 -9.96 10.47 -13.97 -0.15 -10.10 16 19 C 0.35 6.33 8.53 -156.23 -1.33 5.00 16 20 N -0.49 -7.86 7.40 31.10 0.23 -7.63 16 21 H 0.44 5.48 8.96 -182.62 -1.64 3.84 16 22 N -0.27 -4.63 12.58 30.80 0.39 -4.24 16 23 C 0.13 2.42 11.51 -17.11 -0.20 2.22 16 24 C -0.28 -5.50 5.68 -106.82 -0.61 -6.11 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.31 7.02 -51.93 -0.36 0.94 16 31 H 0.10 1.91 6.98 -51.93 -0.36 1.55 16 32 H 0.01 0.25 8.05 -51.93 -0.42 -0.17 16 33 H 0.04 1.11 7.05 -51.93 -0.37 0.74 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.19 2.33 8.06 -52.48 -0.42 1.90 16 36 H 0.20 3.49 8.06 -52.49 -0.42 3.07 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -29.71 308.02 -9.05 -38.76 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.64 Total: 3.46 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -3.11 Total: 11.29 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: 0.35 Total: -66.99 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.27 Total: -6.28 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.71 -9.05 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301745300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.797 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds