Wall clock time and date at job start Mon Mar 30 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99756 * 2 1 4 4 C 1.53006 * 109.46809 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46863 * 64.48699 * 4 3 2 6 6 C 1.46894 * 110.99782 * 160.74755 * 5 4 3 7 7 C 1.50705 * 109.47193 * 287.97283 * 6 5 4 8 8 H 1.08003 * 119.99377 * 3.66195 * 7 6 5 9 9 C 1.37875 * 120.00092 * 183.66279 * 7 6 5 10 10 N 1.31506 * 120.00193 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99808 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47615 * 89.99786 * 11 9 7 13 13 H 1.48500 * 109.47044 * 209.99899 * 11 9 7 14 14 H 1.48500 * 109.47016 * 329.99804 * 11 9 7 15 15 C 1.38109 * 110.99613 * 284.69868 * 5 4 3 16 16 N 1.32857 * 120.81402 * 343.13403 * 15 5 4 17 17 C 1.32132 * 121.19074 * 179.97438 * 16 15 5 18 18 N 1.31502 * 122.64508 * 0.02562 * 17 16 15 19 19 C 1.33194 * 120.68788 * 359.97438 * 18 17 16 20 20 N 1.36312 * 134.62234 * 180.02562 * 19 18 17 21 21 H 0.97003 * 125.87208 * 359.94817 * 20 19 18 22 22 N 1.40063 * 108.25755 * 179.97438 * 20 19 18 23 23 C 1.30255 * 109.69213 * 359.97438 * 22 20 19 24 24 C 1.40810 * 120.81022 * 163.11894 * 15 5 4 25 25 H 1.09001 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47649 * 300.00293 * 1 2 3 27 27 H 1.09004 * 109.46811 * 60.00688 * 1 2 3 28 28 H 1.08993 * 109.47250 * 59.99591 * 3 2 1 29 29 H 1.08996 * 109.47008 * 299.99783 * 3 2 1 30 30 H 1.08992 * 109.47027 * 304.48396 * 4 3 2 31 31 H 1.08999 * 109.46862 * 184.47887 * 4 3 2 32 32 H 1.09004 * 109.47714 * 47.97251 * 6 5 4 33 33 H 1.08998 * 109.47222 * 167.97420 * 6 5 4 34 34 H 0.97000 * 120.00233 * 180.02562 * 10 9 7 35 35 H 1.08003 * 118.67396 * 180.28400 * 17 16 15 36 36 H 1.07995 * 125.76182 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9769 0.5511 -1.2491 6 6 5.3988 0.8198 -1.5017 7 6 5.5742 2.2622 -1.9016 8 1 4.7243 2.9288 -1.9047 9 6 6.8193 2.7309 -2.2633 10 7 7.8541 1.9193 -2.2590 11 14 7.0367 4.5190 -2.7582 12 1 7.3547 5.3303 -1.5558 13 1 8.1471 4.6299 -3.7380 14 1 5.7812 5.0182 -3.3743 15 6 3.7254 -0.8068 -1.2312 16 7 3.4721 -1.4371 -0.0894 17 6 3.2300 -2.7357 -0.0637 18 7 3.2244 -3.4779 -1.1493 19 6 3.4671 -2.9385 -2.3427 20 7 3.5314 -3.4205 -3.6162 21 1 3.3942 -4.3432 -3.8823 22 7 3.8301 -2.3546 -4.4743 23 6 3.9486 -1.2559 -3.7847 24 6 3.7307 -1.5570 -2.4228 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8513 0.5762 0.8479 31 1 3.9785 2.1773 0.0809 32 1 5.9727 0.6214 -0.5965 33 1 5.7534 0.1744 -2.3054 34 1 8.7302 2.2491 -2.5132 35 1 3.0244 -3.2059 0.8866 36 1 4.1764 -0.2799 -4.1868 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301745300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:11 Heat of formation + Delta-G solvation = 71.296469 kcal Electronic energy + Delta-G solvation = -22037.864342 eV Core-core repulsion = 18752.090055 eV Total energy + Delta-G solvation = -3285.774287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.99007 -40.32152 -38.91797 -37.86292 -34.92018 -33.77746 -32.31774 -31.54081 -30.72885 -28.53324 -27.06077 -25.35534 -24.69852 -24.02413 -22.83435 -22.07481 -19.72044 -18.71479 -18.26270 -17.62431 -17.37905 -17.03075 -16.48599 -16.39132 -15.98934 -15.83072 -15.23936 -15.17603 -14.93962 -14.42294 -14.11619 -13.89575 -13.20966 -12.97075 -12.79862 -12.72621 -12.57048 -12.30681 -12.19178 -12.06587 -11.86033 -11.65241 -11.40554 -10.63234 -10.49473 -10.34510 -10.13841 -10.05668 -9.16742 -8.20140 -6.31042 -0.32539 0.38582 1.39956 1.41916 1.48154 1.49495 1.60320 2.39956 2.68139 2.94716 3.04756 3.15912 3.24100 3.33944 3.72531 3.85007 4.05724 4.21595 4.42410 4.43407 4.54401 4.60075 4.65106 4.79705 4.85821 4.94503 5.03108 5.13649 5.19417 5.36800 5.62150 5.72747 5.96373 6.03931 6.22284 6.40980 6.44463 6.52875 6.81510 7.31925 7.39055 8.90952 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.006892 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.344137 B = 4061.478326 C = 5143.353603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.393 6.393 3 C 0.075 3.925 4 C 0.059 3.941 5 N -0.473 5.473 6 C 0.224 3.776 7 C -0.522 4.522 8 H 0.075 0.925 9 C 0.011 3.989 10 N -0.931 5.931 11 Si 0.968 3.032 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.261 1.261 15 C 0.456 3.544 16 N -0.571 5.571 17 C 0.364 3.636 18 N -0.573 5.573 19 C 0.343 3.657 20 N -0.477 5.477 21 H 0.456 0.544 22 N -0.263 5.263 23 C 0.121 3.879 24 C -0.305 4.305 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.097 0.903 32 H -0.022 1.022 33 H 0.018 0.982 34 H 0.265 0.735 35 H 0.233 0.767 36 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.191 -4.932 3.442 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.312 6.312 3 C -0.001 4.001 4 C -0.068 4.068 5 N -0.191 5.191 6 C 0.101 3.899 7 C -0.560 4.560 8 H 0.093 0.907 9 C -0.188 4.188 10 N -0.571 5.571 11 Si 0.793 3.207 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.185 1.185 15 C 0.208 3.792 16 N -0.293 5.293 17 C 0.072 3.928 18 N -0.299 5.299 19 C 0.094 3.906 20 N -0.197 5.197 21 H 0.304 0.696 22 N -0.078 5.078 23 C -0.076 4.076 24 C -0.320 4.320 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.115 0.885 32 H -0.004 1.004 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.249 0.751 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -12.281 -5.854 2.618 13.855 hybrid contribution 0.722 0.920 0.069 1.172 sum -11.560 -4.934 2.687 12.853 Atomic orbital electron populations 1.22761 0.81105 1.02560 1.00236 1.88076 1.19837 1.27939 1.95356 1.22519 0.92146 0.84850 1.00628 1.22217 0.94549 1.00206 0.89784 1.59156 1.20943 1.04113 1.34864 1.19517 0.78147 0.97656 0.94630 1.21320 0.94643 0.94588 1.45478 0.90724 1.25813 0.95370 1.02377 0.95244 1.70077 1.00574 1.37425 1.48978 0.85387 0.78039 0.79172 0.78075 1.19902 1.21339 1.18504 1.19884 0.83072 0.89359 0.86904 1.68502 1.21617 1.11860 1.27369 1.25324 0.85973 0.85281 0.96242 1.67647 1.25445 1.40589 0.96207 1.19241 0.93436 0.89576 0.88367 1.45843 1.62406 1.11048 1.00389 0.69579 1.76901 1.20311 0.94428 1.16189 1.23974 0.95066 0.98355 0.90218 1.19945 1.19760 0.96242 0.96103 0.90007 0.92679 0.94684 0.90705 0.93526 0.91914 0.88513 1.00403 0.96352 0.92577 0.75096 0.78073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.93 16 2 O -0.39 -12.12 7.63 -148.98 -1.14 -13.25 16 3 C 0.08 2.25 6.26 71.98 0.45 2.70 16 4 C 0.06 2.15 5.17 86.30 0.45 2.59 16 5 N -0.47 -19.70 4.39 -704.94 -3.09 -22.79 16 6 C 0.22 11.08 4.63 85.56 0.40 11.48 16 7 C -0.52 -26.77 8.41 25.60 0.22 -26.55 16 8 H 0.07 3.67 7.58 -2.91 -0.02 3.64 16 9 C 0.01 0.59 5.46 84.66 0.46 1.05 16 10 N -0.93 -52.93 13.29 21.45 0.28 -52.65 16 11 Si 0.97 41.23 29.54 68.60 2.03 43.25 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 13 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 15 C 0.46 18.20 4.95 133.64 0.66 18.86 16 16 N -0.57 -20.58 6.79 -197.01 -1.34 -21.92 16 17 C 0.36 11.19 12.24 180.87 2.21 13.40 16 18 N -0.57 -18.77 10.47 -198.10 -2.07 -20.84 16 19 C 0.34 12.06 8.53 134.15 1.14 13.21 16 20 N -0.48 -14.65 7.40 -55.53 -0.41 -15.06 16 21 H 0.46 10.56 8.96 -213.34 -1.91 8.65 16 22 N -0.26 -8.98 12.58 -56.46 -0.71 -9.69 16 23 C 0.12 4.48 11.51 85.65 0.99 5.46 16 24 C -0.31 -11.90 5.68 -21.29 -0.12 -12.02 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.06 2.34 7.02 -2.39 -0.02 2.33 16 31 H 0.10 3.58 6.98 -2.39 -0.02 3.56 16 32 H -0.02 -1.19 8.05 -2.39 -0.02 -1.21 16 33 H 0.02 0.99 7.05 -2.39 -0.02 0.97 16 34 H 0.27 14.32 8.31 -92.71 -0.77 13.54 16 35 H 0.23 4.93 8.06 -2.91 -0.02 4.90 16 36 H 0.20 7.23 8.06 -2.91 -0.02 7.21 16 Total: -1.00 -63.44 308.02 0.86 -62.58 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -0.80 Total: 18.25 kcal Atomic # 6 Polarization: 24.02 SS G_CDS: 8.10 Total: 32.12 kcal Atomic # 7 Polarization: -135.61 SS G_CDS: -7.34 Total: -142.95 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.14 Total: -13.25 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -63.44 0.86 -62.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301745300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.881 kcal (2) G-P(sol) polarization free energy of solvation -63.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds