Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 103.00112 * 2 1 4 4 C 1.52995 * 112.84649 * 64.02733 * 3 2 1 5 5 N 1.46500 * 109.47256 * 49.39147 * 4 3 2 6 6 C 1.39691 * 120.00074 * 178.31285 * 5 4 3 7 7 C 1.39339 * 119.94756 * 359.97438 * 6 5 4 8 8 C 1.38483 * 120.42033 * 180.02562 * 7 6 5 9 9 C 1.37690 * 120.32484 * 359.97335 * 8 7 6 10 10 C 1.40750 * 119.89204 * 0.02562 * 9 8 7 11 11 C 1.41405 * 120.20311 * 179.97438 * 10 9 8 12 12 H 1.08007 * 120.00062 * 27.31684 * 11 10 9 13 13 C 1.39926 * 120.00124 * 207.30986 * 11 10 9 14 14 N 1.30834 * 119.99998 * 15.42378 * 13 11 10 15 15 Si 1.86801 * 120.00319 * 195.42202 * 13 11 10 16 16 H 1.48494 * 109.47104 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47227 * 120.00378 * 15 13 11 18 18 H 1.48501 * 109.47041 * 240.00358 * 15 13 11 19 19 C 1.38279 * 119.95307 * 179.72288 * 6 5 4 20 20 C 1.53779 * 113.68927 * 195.29347 * 3 2 1 21 21 C 1.53777 * 87.07979 * 139.99328 * 20 3 2 22 22 C 1.53782 * 113.61251 * 292.83159 * 3 2 1 23 23 H 1.09003 * 109.47319 * 304.40651 * 1 2 3 24 24 H 1.09005 * 109.46981 * 64.40614 * 1 2 3 25 25 H 1.09000 * 109.47405 * 184.40639 * 1 2 3 26 26 H 1.08997 * 109.47651 * 289.38469 * 4 3 2 27 27 H 1.09008 * 109.46721 * 169.38472 * 4 3 2 28 28 H 0.96997 * 120.00334 * 358.58463 * 5 4 3 29 29 H 1.08000 * 119.79151 * 359.97438 * 7 6 5 30 30 H 1.08002 * 119.83383 * 180.02562 * 8 7 6 31 31 H 1.08002 * 120.04723 * 180.02562 * 9 8 7 32 32 H 0.96995 * 120.00643 * 179.97438 * 14 13 11 33 33 H 1.07994 * 120.15909 * 359.97438 * 19 6 5 34 34 H 1.09003 * 113.61830 * 254.54015 * 20 3 2 35 35 H 1.08999 * 113.61321 * 25.44880 * 20 3 2 36 36 H 1.09001 * 113.61679 * 220.02306 * 21 20 3 37 37 H 1.09002 * 113.61755 * 89.11667 * 21 20 3 38 38 H 1.08995 * 113.61198 * 334.48107 * 22 3 2 39 39 H 1.09003 * 113.61176 * 105.38915 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.7540 2.4852 1.2675 5 7 2.1878 1.7294 2.4451 6 6 1.9061 2.2099 3.7262 7 6 1.2129 3.4084 3.8828 8 6 0.9289 3.8940 5.1482 9 6 1.3283 3.1968 6.2662 10 6 2.0293 1.9846 6.1237 11 6 2.4432 1.2634 7.2674 12 1 1.8922 1.3546 8.1919 13 6 3.5663 0.4315 7.2015 14 7 4.4042 0.5416 6.2027 15 14 3.8696 -0.8363 8.5395 16 1 2.7832 -0.7602 9.5489 17 1 3.8923 -2.1942 7.9388 18 1 5.1742 -0.5627 9.1941 19 6 2.3110 1.4927 4.8370 20 6 3.6846 2.0639 -0.3714 21 6 3.1545 3.2596 -1.1802 22 6 1.8279 2.4907 -1.2987 23 1 -0.3634 0.5807 0.8479 24 1 -0.3633 0.4440 -0.9269 25 1 -0.3634 -1.0246 0.0790 26 1 0.6666 2.5585 1.2631 27 1 2.1856 3.4858 1.2988 28 1 2.6741 0.8973 2.3354 29 1 0.8958 3.9626 3.0117 30 1 0.3906 4.8238 5.2585 31 1 1.1040 3.5794 7.2510 32 1 5.1830 -0.0347 6.1571 33 1 2.8444 0.5615 4.7168 34 1 4.3016 2.3518 0.4798 35 1 4.1443 1.2903 -0.9864 36 1 3.6632 3.4019 -2.1336 37 1 3.0759 4.1790 -0.5999 38 1 1.7801 1.8337 -2.1670 39 1 0.9460 3.1230 -1.1959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313432009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = 36.074760 kcal Electronic energy + Delta-G solvation = -19114.724071 eV Core-core repulsion = 16341.422919 eV Total energy + Delta-G solvation = -2773.301152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.37020 -37.54434 -34.54151 -33.09889 -29.40796 -29.38444 -28.66681 -26.09498 -25.67437 -25.15874 -23.49328 -20.98034 -19.86133 -18.97757 -17.24066 -16.76682 -15.91219 -15.28442 -14.80194 -14.74245 -14.35485 -14.23728 -13.72742 -13.45567 -13.06281 -12.90004 -12.64410 -12.57068 -12.32173 -12.11351 -12.00206 -11.51766 -11.13358 -11.01925 -10.97070 -10.64277 -10.56124 -10.44762 -10.31480 -9.68739 -9.57593 -9.37999 -9.19753 -8.72170 -7.58302 -7.24120 -6.65561 -6.09953 -4.26652 1.76016 2.58614 2.90541 3.14509 3.19979 3.26638 3.37229 4.03308 4.09066 4.38154 4.53706 4.64377 4.77957 4.80464 5.15849 5.22334 5.27414 5.52035 5.56333 5.69153 5.71178 5.78013 5.86847 5.90524 5.96550 6.03638 6.21729 6.29594 6.59091 6.91383 7.14778 7.20212 7.42415 7.50500 7.85850 8.00159 8.14790 8.23147 8.55054 8.79229 8.90051 9.06688 9.17049 10.33980 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.004756 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.993453 B = 5885.532007 C = 6419.907523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.245 6.245 3 C -0.065 4.065 4 C 0.163 3.837 5 N -0.753 5.753 6 C 0.217 3.783 7 C -0.300 4.300 8 C -0.067 4.067 9 C -0.256 4.256 10 C 0.140 3.860 11 C -0.467 4.467 12 H 0.076 0.924 13 C 0.078 3.922 14 N -0.796 5.796 15 Si 0.903 3.097 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.276 1.276 19 C -0.225 4.225 20 C -0.107 4.107 21 C -0.135 4.135 22 C -0.122 4.122 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.397 0.603 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.276 0.724 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 0.861 -14.314 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.015 6.015 3 C -0.175 4.175 4 C 0.035 3.965 5 N -0.389 5.389 6 C 0.118 3.882 7 C -0.323 4.323 8 C -0.086 4.086 9 C -0.277 4.277 10 C 0.137 3.863 11 C -0.497 4.497 12 H 0.094 0.906 13 C -0.139 4.139 14 N -0.421 5.421 15 Si 0.728 3.272 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.202 1.202 19 C -0.249 4.249 20 C -0.146 4.146 21 C -0.174 4.174 22 C -0.162 4.162 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.233 0.767 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.187 -0.027 -14.494 14.658 hybrid contribution -0.460 0.142 0.601 0.770 sum -2.647 0.115 -13.893 14.143 Atomic orbital electron populations 1.23312 0.94476 1.06161 1.04834 1.86639 1.07447 1.10128 1.97276 1.24551 1.01396 0.93412 0.98178 1.20805 0.97898 0.94517 0.83277 1.44505 1.65722 1.27075 1.01554 1.17644 0.93966 0.92806 0.83796 1.19869 1.16146 1.00436 0.95846 1.20275 0.98266 0.97272 0.92812 1.20885 1.12221 0.98536 0.96023 1.17324 0.87455 0.89147 0.92368 1.19562 1.10017 1.22488 0.97641 0.90635 1.25848 0.95133 0.96568 0.96376 1.69858 1.09436 1.33258 1.29594 0.86348 0.78858 0.80601 0.81366 1.18534 1.19876 1.20159 1.20689 1.11452 1.02366 0.90360 1.22796 0.93213 0.97977 1.00641 1.22827 0.96517 0.97465 1.00603 1.23196 0.98459 0.98759 0.95773 0.90078 0.90920 0.88526 0.93481 0.92179 0.76717 0.89934 0.89744 0.89423 0.91295 0.86688 0.89955 0.89251 0.90839 0.89606 0.88911 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.61 101.05 1.07 -0.30 16 2 S -0.24 -3.33 20.51 -107.50 -2.20 -5.54 16 3 C -0.07 -0.82 0.90 -89.81 -0.08 -0.91 16 4 C 0.16 2.53 4.08 -4.04 -0.02 2.51 16 5 N -0.75 -14.63 5.47 -58.68 -0.32 -14.95 16 6 C 0.22 5.11 6.64 -83.85 -0.56 4.56 16 7 C -0.30 -6.87 9.32 -39.08 -0.36 -7.23 16 8 C -0.07 -1.58 10.02 -39.69 -0.40 -1.97 16 9 C -0.26 -6.56 9.79 -38.83 -0.38 -6.95 16 10 C 0.14 3.87 5.54 -106.85 -0.59 3.28 16 11 C -0.47 -12.82 9.05 -37.75 -0.34 -13.16 16 12 H 0.08 2.01 7.89 -52.48 -0.41 1.59 16 13 C 0.08 2.01 5.17 -17.34 -0.09 1.93 16 14 N -0.80 -21.22 11.02 55.55 0.61 -20.61 16 15 Si 0.90 19.30 29.59 -169.99 -5.03 14.27 16 16 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 C -0.22 -5.98 8.51 -38.68 -0.33 -6.31 16 20 C -0.11 -1.27 7.24 -25.92 -0.19 -1.45 16 21 C -0.14 -1.30 7.73 -25.92 -0.20 -1.50 16 22 C -0.12 -1.21 7.23 -25.92 -0.19 -1.40 16 23 H 0.08 1.04 7.59 -51.92 -0.39 0.65 16 24 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.10 1.02 8.14 -51.92 -0.42 0.59 16 26 H 0.05 0.74 7.53 -51.93 -0.39 0.35 16 27 H 0.06 0.95 7.05 -51.92 -0.37 0.58 16 28 H 0.40 7.82 7.53 -40.82 -0.31 7.51 16 29 H 0.08 1.70 6.70 -52.49 -0.35 1.34 16 30 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 33 H 0.12 3.19 6.30 -52.49 -0.33 2.86 16 34 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 35 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.84 7.65 -51.93 -0.40 0.44 16 38 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -28.41 329.21 -10.52 -38.93 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -5.88 Total: 11.85 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -2.65 Total: -28.92 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.29 Total: -35.55 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -2.20 Total: -5.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.41 -10.52 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.000 kcal (2) G-P(sol) polarization free energy of solvation -28.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds