Wall clock time and date at job start Mon Mar 30 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.40660 * 2 1 4 4 C 1.53249 * 109.40848 * 240.15615 * 2 1 3 5 5 S 1.81895 * 108.50798 * 177.95856 * 4 2 1 6 6 C 1.81901 * 101.91529 * 51.30516 * 5 4 2 7 7 C 1.53250 * 108.50531 * 308.69709 * 6 5 4 8 8 N 1.46467 * 109.86035 * 62.00097 * 7 6 5 9 9 C 1.46905 * 111.00026 * 162.23263 * 8 7 6 10 10 C 1.50697 * 109.47130 * 295.35602 * 9 8 7 11 11 C 1.38634 * 119.74686 * 275.26889 * 10 9 8 12 12 C 1.37624 * 120.24309 * 179.76570 * 11 10 9 13 13 C 1.40710 * 119.74638 * 0.52963 * 12 11 10 14 14 C 1.41393 * 120.24599 * 179.74455 * 13 12 11 15 15 H 1.08004 * 119.99966 * 206.50220 * 14 13 12 16 16 C 1.39949 * 120.00158 * 26.50727 * 14 13 12 17 17 N 1.30824 * 119.99696 * 14.93864 * 16 14 13 18 18 Si 1.86797 * 120.00306 * 194.94295 * 16 14 13 19 19 H 1.48501 * 109.47139 * 59.99481 * 18 16 14 20 20 H 1.48501 * 109.47131 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47110 * 299.99649 * 18 16 14 22 22 C 1.40720 * 119.51009 * 359.72633 * 13 12 11 23 23 C 1.37617 * 119.74475 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47193 * 187.27919 * 1 2 3 25 25 H 1.08996 * 109.46756 * 307.28320 * 1 2 3 26 26 H 1.09001 * 109.46374 * 67.28145 * 1 2 3 27 27 H 1.09001 * 109.62760 * 58.25250 * 4 2 1 28 28 H 1.09002 * 109.79682 * 297.76226 * 4 2 1 29 29 H 1.08992 * 109.63430 * 188.99283 * 6 5 4 30 30 H 1.09001 * 109.79107 * 68.49651 * 6 5 4 31 31 H 1.09003 * 109.40781 * 182.11702 * 7 6 5 32 32 H 1.09000 * 109.40605 * 301.87992 * 7 6 5 33 33 H 1.08999 * 109.46795 * 55.36256 * 9 8 7 34 34 H 1.09005 * 109.46545 * 175.35418 * 9 8 7 35 35 H 1.08000 * 119.87894 * 0.02562 * 11 10 9 36 36 H 1.08001 * 120.12709 * 180.23439 * 12 11 10 37 37 H 0.96995 * 120.00149 * 180.02562 * 17 16 14 38 38 H 1.08007 * 120.12370 * 180.02562 * 22 13 12 39 39 H 1.08004 * 119.87125 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0280 0.0000 4 6 2.0393 -0.7193 -1.2537 5 16 3.8570 -0.6519 -1.2598 6 6 4.2612 -1.2695 0.4027 7 6 3.4461 -0.4745 1.4284 8 7 2.0151 -0.6869 1.1993 9 6 1.2302 -0.3024 2.3800 10 6 1.5777 -1.2102 3.5316 11 6 0.9382 -2.4334 3.6604 12 6 1.2511 -3.2725 4.7055 13 6 2.2160 -2.8798 5.6513 14 6 2.5417 -3.7312 6.7322 15 1 2.9194 -3.3136 7.6538 16 6 2.3747 -5.1151 6.6077 17 7 2.2030 -5.6496 5.4260 18 14 2.3968 -6.1991 8.1288 19 1 1.3042 -5.7869 9.0463 20 1 2.1995 -7.6159 7.7299 21 1 3.7035 -6.0562 8.8196 22 6 2.8547 -1.6335 5.5134 23 6 2.5305 -0.8133 4.4570 24 1 -0.3633 -1.0194 0.1302 25 1 -0.3633 0.6225 0.8176 26 1 -0.3632 0.3969 -0.9480 27 1 1.6514 -0.2232 -2.1434 28 1 1.7114 -1.7588 -1.2418 29 1 5.3253 -1.1329 0.5954 30 1 4.0088 -2.3274 0.4749 31 1 3.7052 -0.8073 2.4335 32 1 3.6752 0.5866 1.3292 33 1 1.4590 0.7290 2.6483 34 1 0.1674 -0.3919 2.1546 35 1 0.1948 -2.7309 2.9357 36 1 0.7545 -4.2267 4.8019 37 1 2.0869 -6.6087 5.3398 38 1 3.5972 -1.3222 6.2335 39 1 3.0191 0.1439 4.3494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335818388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:51 Heat of formation + Delta-G solvation = 5.249320 kcal Electronic energy + Delta-G solvation = -19360.618577 eV Core-core repulsion = 16585.980734 eV Total energy + Delta-G solvation = -2774.637843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.26823 -38.77768 -35.66460 -33.83432 -32.89678 -31.16874 -30.62233 -28.25065 -27.72031 -24.99406 -23.72648 -22.75394 -21.83121 -20.84099 -19.19457 -17.76579 -17.20111 -16.97476 -16.58374 -15.83672 -15.64795 -15.53382 -15.07033 -14.89602 -14.46533 -14.15744 -13.79227 -13.66807 -13.44969 -13.21986 -13.15792 -13.04575 -12.89660 -12.70797 -12.45217 -12.32154 -12.14521 -11.95814 -11.66402 -11.39480 -11.17420 -10.99449 -10.67344 -9.32586 -9.29811 -9.10976 -8.70791 -8.59839 -6.32834 0.82825 0.97216 1.16538 1.37617 1.48622 1.52098 1.53581 2.21208 2.65610 3.00783 3.74884 3.81016 3.86364 4.11728 4.15974 4.19447 4.30256 4.36838 4.46403 4.52497 4.59852 4.64977 4.69772 4.76710 4.86534 4.88765 4.98791 5.07825 5.09774 5.17629 5.31388 5.40432 5.48279 5.73417 5.95547 6.05032 6.13289 6.27665 6.32250 6.41987 6.73770 6.96831 7.06470 8.36365 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027537 B = 0.004201 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.585670 B = 6664.251120 C = 6899.954637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.052 0.948 4 C -0.059 4.059 5 S -0.302 6.302 6 C -0.064 4.064 7 C 0.059 3.941 8 N -0.553 5.553 9 C 0.125 3.875 10 C -0.191 4.191 11 C -0.083 4.083 12 C -0.188 4.188 13 C 0.080 3.920 14 C -0.505 4.505 15 H 0.072 0.928 16 C 0.035 3.965 17 N -0.830 5.830 18 Si 0.980 3.020 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.241 4.241 23 C -0.085 4.085 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.286 0.714 38 H 0.093 0.907 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 8.557 -10.092 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 H 0.070 0.930 4 C -0.208 4.208 5 S -0.075 6.075 6 C -0.213 4.213 7 C -0.070 4.070 8 N -0.279 5.279 9 C -0.001 4.001 10 C -0.192 4.192 11 C -0.102 4.102 12 C -0.207 4.207 13 C 0.078 3.922 14 C -0.535 4.535 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.457 5.457 18 Si 0.801 3.199 19 H -0.185 1.185 20 H -0.193 1.193 21 H -0.185 1.185 22 C -0.260 4.260 23 C -0.103 4.103 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.145 0.855 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.381 8.181 -11.154 13.902 hybrid contribution -0.324 -0.519 1.851 1.949 sum -1.705 7.662 -9.303 12.172 Atomic orbital electron populations 1.21984 0.92240 1.02766 1.03349 1.21805 0.96868 0.95197 0.88754 0.93013 1.23617 0.91122 1.04724 1.01289 1.86709 1.10628 1.86930 1.23207 1.23430 1.03294 1.02186 0.92387 1.22144 0.87740 0.97860 0.99305 1.61223 1.02910 1.60145 1.03621 1.20783 0.98110 0.94548 0.86672 1.19292 1.03504 0.97246 0.99188 1.20679 0.99075 0.93955 0.96452 1.21268 1.00819 1.00060 0.98563 1.17939 0.89620 0.92046 0.92622 1.19810 1.40960 0.92219 1.00479 0.90938 1.26708 0.91489 0.99817 0.99896 1.69872 1.36146 1.13987 1.25649 0.85286 0.79973 0.76711 0.77934 1.18492 1.19267 1.18476 1.21159 1.04859 0.98221 1.01789 1.20655 0.97128 0.98068 0.94493 0.92232 0.91552 0.89698 0.85482 0.89819 0.86814 0.90715 0.90315 0.93470 0.94558 0.89048 0.88067 0.88586 0.90351 0.88865 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.00 71.98 0.58 -2.10 16 2 C 0.08 1.89 2.50 45.08 0.11 2.00 16 3 H 0.05 1.17 7.91 -2.39 -0.02 1.15 16 4 C -0.06 -1.29 5.96 72.07 0.43 -0.86 16 5 S -0.30 -7.78 22.40 -56.49 -1.27 -9.05 16 6 C -0.06 -1.80 6.69 72.07 0.48 -1.32 16 7 C 0.06 1.74 5.28 86.47 0.46 2.19 16 8 N -0.55 -16.08 4.31 -876.73 -3.78 -19.86 16 9 C 0.12 3.83 4.53 85.56 0.39 4.22 16 10 C -0.19 -7.63 4.76 -19.68 -0.09 -7.72 16 11 C -0.08 -3.75 9.69 22.22 0.22 -3.54 16 12 C -0.19 -9.90 8.68 22.73 0.20 -9.70 16 13 C 0.08 4.34 5.56 -21.29 -0.12 4.23 16 14 C -0.50 -27.65 9.06 23.46 0.21 -27.44 16 15 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 16 C 0.03 1.79 5.19 85.26 0.44 2.24 16 17 N -0.83 -44.34 10.92 21.83 0.24 -44.10 16 18 Si 0.98 38.85 29.59 68.60 2.03 40.87 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 22 C -0.24 -11.71 9.80 22.73 0.22 -11.49 16 23 C -0.08 -3.54 7.93 22.22 0.18 -3.37 16 24 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 25 H 0.07 1.20 6.62 -2.39 -0.02 1.19 16 26 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 27 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 29 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.08 2.70 5.43 -2.39 -0.01 2.69 16 32 H 0.05 1.29 7.92 -2.39 -0.02 1.27 16 33 H 0.04 1.04 8.03 -2.39 -0.02 1.02 16 34 H 0.09 2.57 5.60 -2.38 -0.01 2.55 16 35 H 0.10 4.20 8.06 -2.91 -0.02 4.17 16 36 H 0.10 5.38 6.21 -2.91 -0.02 5.36 16 37 H 0.29 13.90 8.30 -92.71 -0.77 13.14 16 38 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.11 3.98 8.01 -2.91 -0.02 3.95 16 Total: -1.00 -58.55 318.97 1.94 -56.60 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 1.02 Total: 28.21 kcal Atomic # 6 Polarization: -56.37 SS G_CDS: 3.70 Total: -52.67 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -3.54 Total: -63.97 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.27 Total: -9.05 kcal Total: -58.55 1.94 -56.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335818388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.851 kcal (2) G-P(sol) polarization free energy of solvation -58.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds