Wall clock time and date at job start Mon Mar 30 2020 01:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.81045 * 2 1 4 4 C 1.52247 * 109.62840 * 239.49407 * 2 1 3 5 5 C 1.50605 * 110.88971 * 193.01694 * 4 2 1 6 6 C 1.38944 * 117.59580 * 199.36122 * 5 4 2 7 7 C 1.38132 * 120.56458 * 181.22990 * 6 5 4 8 8 F 1.35104 * 120.11336 * 179.97438 * 7 6 5 9 9 C 1.38484 * 119.76849 * 359.94063 * 7 6 5 10 10 C 1.37921 * 119.69318 * 359.74074 * 9 7 6 11 11 C 1.37686 * 122.85695 * 20.06825 * 5 4 2 12 12 C 1.50817 * 122.33622 * 358.49487 * 11 5 4 13 13 H 1.09007 * 109.43292 * 251.52268 * 12 11 5 14 14 C 1.52991 * 109.44030 * 131.65214 * 12 11 5 15 15 N 1.46675 * 109.68331 * 11.58276 * 12 11 5 16 16 C 1.34775 * 121.33499 * 135.58485 * 15 12 11 17 17 O 1.21691 * 119.99668 * 29.17497 * 16 15 12 18 18 C 1.46376 * 120.00274 * 209.16694 * 16 15 12 19 19 H 1.07998 * 120.00545 * 328.46624 * 18 16 15 20 20 C 1.40049 * 119.99782 * 148.73644 * 18 16 15 21 21 N 1.30672 * 119.99820 * 359.72427 * 20 18 16 22 22 Si 1.86794 * 120.00159 * 179.72913 * 20 18 16 23 23 H 1.48507 * 109.46913 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47285 * 119.99625 * 22 20 18 25 25 H 1.48500 * 109.47422 * 240.00246 * 22 20 18 26 26 H 1.09004 * 109.46741 * 271.50751 * 1 2 3 27 27 H 1.09007 * 109.47341 * 31.50418 * 1 2 3 28 28 H 1.09005 * 109.47365 * 151.50807 * 1 2 3 29 29 H 1.09008 * 109.28982 * 72.58751 * 4 2 1 30 30 H 1.09002 * 109.08832 * 313.31507 * 4 2 1 31 31 H 1.08007 * 119.71515 * 1.17943 * 6 5 4 32 32 H 1.08005 * 120.15524 * 179.75934 * 9 7 6 33 33 H 1.08001 * 119.72510 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.47577 * 291.90700 * 14 12 11 35 35 H 1.09004 * 109.47350 * 51.90859 * 14 12 11 36 36 H 1.08999 * 109.47513 * 171.90612 * 14 12 11 37 37 H 0.97003 * 119.99943 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0256 0.0000 4 6 2.0414 -0.7279 -1.2355 5 6 3.5131 -1.0240 -1.1137 6 6 4.2131 -1.2995 -2.2818 7 6 5.5597 -1.6042 -2.2385 8 9 6.2313 -1.8711 -3.3800 9 6 6.2190 -1.6343 -1.0211 10 6 5.5262 -1.3544 0.1382 11 6 4.1733 -1.0448 0.0944 12 6 3.4798 -0.7386 1.3982 13 1 3.8133 0.2313 1.7674 14 6 3.8251 -1.8193 2.4246 15 7 2.0281 -0.7088 1.1904 16 6 1.1843 -1.3111 2.0516 17 8 1.4887 -1.4215 3.2247 18 6 -0.0982 -1.8322 1.5761 19 1 -0.6089 -1.3459 0.7581 20 6 -0.6658 -2.9582 2.1855 21 7 -0.0478 -3.5467 3.1751 22 14 -2.3061 -3.6188 1.5837 23 1 -2.7951 -2.7803 0.4598 24 1 -2.1353 -5.0186 1.1183 25 1 -3.2916 -3.5829 2.6939 26 1 -0.3633 0.0270 1.0274 27 1 -0.3634 0.8762 -0.5370 28 1 -0.3634 -0.9032 -0.4902 29 1 1.8724 -0.1068 -2.1152 30 1 1.4956 -1.6646 -1.3488 31 1 3.6996 -1.2761 -3.2318 32 1 7.2709 -1.8755 -0.9796 33 1 6.0400 -1.3774 1.0879 34 1 3.3696 -2.7633 2.1256 35 1 4.9074 -1.9385 2.4766 36 1 3.4445 -1.5260 3.4030 37 1 -0.4411 -4.3263 3.5975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336570053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:29 Heat of formation + Delta-G solvation = -13.083491 kcal Electronic energy + Delta-G solvation = -22144.323211 eV Core-core repulsion = 18802.677222 eV Total energy + Delta-G solvation = -3341.645989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.76108 -40.07646 -37.80522 -35.17759 -33.86728 -32.44125 -31.55901 -29.72039 -27.81708 -27.38194 -25.33100 -23.61593 -22.09932 -21.03715 -20.70571 -18.38347 -17.37512 -16.90889 -16.26618 -15.72377 -15.44213 -15.07632 -14.70913 -14.23846 -14.01866 -13.65867 -13.33660 -13.09461 -13.01242 -12.59212 -12.45746 -12.18674 -11.86730 -11.46374 -11.30841 -11.24580 -11.07266 -11.03698 -10.74244 -10.54764 -10.46114 -10.35641 -10.19074 -8.92105 -8.71990 -8.64379 -8.24448 -7.52693 -7.20843 -6.28648 -4.55563 1.34578 1.38989 3.10573 3.19635 3.22204 3.73402 4.03361 4.30687 4.42373 4.46815 4.84172 4.96063 5.06529 5.28891 5.41737 5.50034 5.65229 5.67504 5.72385 5.91318 5.99031 6.02956 6.10221 6.18155 6.24893 6.27195 6.37898 6.44022 6.49555 6.71597 6.75736 6.93559 7.05853 7.09038 7.25552 7.49940 7.66847 8.13715 8.41621 9.06878 9.36802 10.48859 10.69344 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.005875 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.943322 B = 4764.896915 C = 5127.518836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.162 3.838 3 H 0.056 0.944 4 C -0.096 4.096 5 C -0.032 4.032 6 C -0.159 4.159 7 C 0.086 3.914 8 F -0.147 7.147 9 C -0.162 4.162 10 C -0.087 4.087 11 C -0.086 4.086 12 C 0.196 3.804 13 H 0.060 0.940 14 C -0.148 4.148 15 N -0.649 5.649 16 C 0.588 3.412 17 O -0.566 6.566 18 C -0.591 4.591 19 H 0.125 0.875 20 C 0.089 3.911 21 N -0.793 5.793 22 Si 0.902 3.098 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.277 1.277 26 H 0.105 0.895 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 4.585 -9.456 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.057 3.943 3 H 0.074 0.926 4 C -0.134 4.134 5 C -0.032 4.032 6 C -0.178 4.178 7 C 0.067 3.933 8 F -0.126 7.126 9 C -0.180 4.180 10 C -0.105 4.105 11 C -0.087 4.087 12 C 0.091 3.909 13 H 0.078 0.922 14 C -0.205 4.205 15 N -0.389 5.389 16 C 0.393 3.607 17 O -0.447 6.447 18 C -0.627 4.627 19 H 0.142 0.858 20 C -0.129 4.129 21 N -0.422 5.422 22 Si 0.728 3.272 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.203 1.203 26 H 0.123 0.877 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.702 4.343 -8.667 11.785 hybrid contribution -0.410 -0.660 -0.744 1.075 sum 6.292 3.683 -9.411 11.904 Atomic orbital electron populations 1.22997 0.93820 0.99983 1.05361 1.20516 0.95074 0.93770 0.84901 0.92645 1.20997 0.90835 1.02217 0.99359 1.19481 0.96090 0.96472 0.91186 1.21133 0.92683 1.04443 0.99561 1.17555 0.90750 1.03143 0.81847 1.91460 1.80457 1.91779 1.48904 1.20977 1.00681 1.05050 0.91333 1.21012 0.93679 0.97961 0.97886 1.20280 0.93774 0.98909 0.95715 1.19495 0.82721 0.98324 0.90359 0.92225 1.22176 0.98524 0.98540 1.01218 1.48436 1.03513 1.60559 1.26405 1.18114 0.84412 0.74568 0.83570 1.90480 1.78196 1.58720 1.17348 1.23015 1.05331 1.13966 1.20390 0.85789 1.25801 0.97544 0.96249 0.93263 1.69911 1.37133 1.16874 1.18325 0.86393 0.82502 0.79008 0.79340 1.18677 1.20451 1.20265 0.87684 0.94579 0.90473 0.90757 0.89240 0.85194 0.85168 0.84922 0.92187 0.94089 0.88686 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 7.41 37.16 0.28 -2.58 16 2 C 0.16 2.86 3.39 -67.92 -0.23 2.63 16 3 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.10 -1.49 5.15 -28.31 -0.15 -1.64 16 5 C -0.03 -0.51 5.76 -104.61 -0.60 -1.12 16 6 C -0.16 -2.31 9.57 -39.36 -0.38 -2.69 16 7 C 0.09 1.25 7.30 -39.53 -0.29 0.96 16 8 F -0.15 -2.11 17.27 2.25 0.04 -2.07 16 9 C -0.16 -2.20 10.04 -39.61 -0.40 -2.59 16 10 C -0.09 -1.27 9.00 -39.47 -0.36 -1.62 16 11 C -0.09 -1.45 5.44 -104.54 -0.57 -2.01 16 12 C 0.20 3.78 3.45 -68.93 -0.24 3.54 16 13 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 14 C -0.15 -3.02 7.71 37.15 0.29 -2.74 16 15 N -0.65 -14.03 2.94 -161.23 -0.47 -14.50 16 16 C 0.59 15.49 5.78 -12.99 -0.08 15.41 16 17 O -0.57 -16.90 13.05 5.20 0.07 -16.83 16 18 C -0.59 -15.25 7.51 -35.63 -0.27 -15.52 16 19 H 0.13 2.84 2.67 -85.55 -0.23 2.61 16 20 C 0.09 2.36 5.48 -17.37 -0.10 2.26 16 21 N -0.79 -22.75 12.28 55.55 0.68 -22.07 16 22 Si 0.90 19.41 29.56 -169.99 -5.02 14.39 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 H 0.10 2.15 5.18 -51.93 -0.27 1.88 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.36 6.03 -51.93 -0.31 1.04 16 29 H 0.07 0.93 8.11 -51.92 -0.42 0.51 16 30 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 31 H 0.13 1.62 8.05 -52.48 -0.42 1.19 16 32 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.13 1.68 6.61 -52.49 -0.35 1.33 16 34 H 0.06 1.42 7.84 -51.93 -0.41 1.01 16 35 H 0.04 0.68 6.31 -51.93 -0.33 0.35 16 36 H 0.09 2.22 6.11 -51.93 -0.32 1.91 16 37 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 294.85 15.07 4.44 4.44 Total: -1.00 -30.89 294.85 -7.63 -38.52 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.28 Total: 5.83 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.08 Total: -7.71 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.21 Total: -36.57 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.07 Total: -16.83 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.89 -7.63 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336570053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.434 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds