Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.81045 * 2 1 4 4 C 1.52247 * 109.62840 * 239.49407 * 2 1 3 5 5 C 1.50605 * 110.88971 * 193.01694 * 4 2 1 6 6 C 1.38944 * 117.59580 * 199.36122 * 5 4 2 7 7 C 1.38132 * 120.56458 * 181.22990 * 6 5 4 8 8 F 1.35104 * 120.11336 * 179.97438 * 7 6 5 9 9 C 1.38484 * 119.76849 * 359.94063 * 7 6 5 10 10 C 1.37921 * 119.69318 * 359.74074 * 9 7 6 11 11 C 1.37686 * 122.85695 * 20.06825 * 5 4 2 12 12 C 1.50817 * 122.33622 * 358.49487 * 11 5 4 13 13 H 1.09007 * 109.43292 * 251.52268 * 12 11 5 14 14 C 1.52991 * 109.44030 * 131.65214 * 12 11 5 15 15 N 1.46675 * 109.68331 * 11.58276 * 12 11 5 16 16 C 1.34775 * 121.33499 * 135.58485 * 15 12 11 17 17 O 1.21691 * 119.99668 * 29.17497 * 16 15 12 18 18 C 1.46376 * 120.00274 * 209.16694 * 16 15 12 19 19 H 1.07998 * 120.00545 * 328.46624 * 18 16 15 20 20 C 1.40049 * 119.99782 * 148.73644 * 18 16 15 21 21 N 1.30672 * 119.99820 * 359.72427 * 20 18 16 22 22 Si 1.86794 * 120.00159 * 179.72913 * 20 18 16 23 23 H 1.48507 * 109.46913 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47285 * 119.99625 * 22 20 18 25 25 H 1.48500 * 109.47422 * 240.00246 * 22 20 18 26 26 H 1.09004 * 109.46741 * 271.50751 * 1 2 3 27 27 H 1.09007 * 109.47341 * 31.50418 * 1 2 3 28 28 H 1.09005 * 109.47365 * 151.50807 * 1 2 3 29 29 H 1.09008 * 109.28982 * 72.58751 * 4 2 1 30 30 H 1.09002 * 109.08832 * 313.31507 * 4 2 1 31 31 H 1.08007 * 119.71515 * 1.17943 * 6 5 4 32 32 H 1.08005 * 120.15524 * 179.75934 * 9 7 6 33 33 H 1.08001 * 119.72510 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.47577 * 291.90700 * 14 12 11 35 35 H 1.09004 * 109.47350 * 51.90859 * 14 12 11 36 36 H 1.08999 * 109.47513 * 171.90612 * 14 12 11 37 37 H 0.97003 * 119.99943 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0256 0.0000 4 6 2.0414 -0.7279 -1.2355 5 6 3.5131 -1.0240 -1.1137 6 6 4.2131 -1.2995 -2.2818 7 6 5.5597 -1.6042 -2.2385 8 9 6.2313 -1.8711 -3.3800 9 6 6.2190 -1.6343 -1.0211 10 6 5.5262 -1.3544 0.1382 11 6 4.1733 -1.0448 0.0944 12 6 3.4798 -0.7386 1.3982 13 1 3.8133 0.2313 1.7674 14 6 3.8251 -1.8193 2.4246 15 7 2.0281 -0.7088 1.1904 16 6 1.1843 -1.3111 2.0516 17 8 1.4887 -1.4215 3.2247 18 6 -0.0982 -1.8322 1.5761 19 1 -0.6089 -1.3459 0.7581 20 6 -0.6658 -2.9582 2.1855 21 7 -0.0478 -3.5467 3.1751 22 14 -2.3061 -3.6188 1.5837 23 1 -2.7951 -2.7803 0.4598 24 1 -2.1353 -5.0186 1.1183 25 1 -3.2916 -3.5829 2.6939 26 1 -0.3633 0.0270 1.0274 27 1 -0.3634 0.8762 -0.5370 28 1 -0.3634 -0.9032 -0.4902 29 1 1.8724 -0.1068 -2.1152 30 1 1.4956 -1.6646 -1.3488 31 1 3.6996 -1.2761 -3.2318 32 1 7.2709 -1.8755 -0.9796 33 1 6.0400 -1.3774 1.0879 34 1 3.3696 -2.7633 2.1256 35 1 4.9074 -1.9385 2.4766 36 1 3.4445 -1.5260 3.4030 37 1 -0.4411 -4.3263 3.5975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336570053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -31.443045 kcal Electronic energy + Delta-G solvation = -22145.119341 eV Core-core repulsion = 18802.677222 eV Total energy + Delta-G solvation = -3342.442119 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.86919 -41.47453 -39.36864 -36.84311 -35.44905 -34.31641 -32.89487 -31.10728 -29.37644 -28.98793 -26.86750 -25.11250 -23.38870 -22.44653 -22.20351 -20.04405 -19.01591 -18.18836 -17.59115 -17.10813 -16.74375 -16.55672 -16.28926 -15.84808 -15.34830 -15.01765 -14.83460 -14.65196 -14.30976 -14.07572 -13.94787 -13.67586 -13.40105 -13.11118 -12.94285 -12.75581 -12.63084 -12.52414 -12.21404 -12.07911 -11.99946 -11.94778 -11.56465 -10.89234 -10.38730 -9.84547 -9.55657 -9.41390 -8.95345 -8.26004 -6.58905 0.16913 0.27004 1.40548 1.43087 1.57758 2.25415 2.50033 2.57278 2.75329 3.25458 3.51828 3.67545 3.80844 3.92575 4.12932 4.16784 4.25202 4.33016 4.41622 4.48587 4.57124 4.71210 4.82060 4.89931 4.97230 5.03405 5.06136 5.12240 5.16055 5.31389 5.41647 5.47247 5.53770 5.62763 5.64728 5.90899 5.95468 6.38554 6.54194 7.06601 7.50943 8.51495 8.74801 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.005875 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.943322 B = 4764.896915 C = 5127.518836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.074 0.926 4 C -0.089 4.089 5 C -0.046 4.046 6 C -0.156 4.156 7 C 0.082 3.918 8 F -0.145 7.145 9 C -0.155 4.155 10 C -0.088 4.088 11 C -0.106 4.106 12 C 0.193 3.807 13 H 0.067 0.933 14 C -0.133 4.133 15 N -0.655 5.655 16 C 0.576 3.424 17 O -0.617 6.617 18 C -0.607 4.607 19 H 0.155 0.845 20 C 0.028 3.972 21 N -0.851 5.851 22 Si 0.981 3.019 23 H -0.236 1.236 24 H -0.277 1.277 25 H -0.279 1.279 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.149 0.851 34 H 0.017 0.983 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 5.396 -12.662 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.092 0.908 4 C -0.127 4.127 5 C -0.046 4.046 6 C -0.174 4.174 7 C 0.063 3.937 8 F -0.124 7.124 9 C -0.173 4.173 10 C -0.106 4.106 11 C -0.107 4.107 12 C 0.088 3.912 13 H 0.085 0.915 14 C -0.190 4.190 15 N -0.394 5.394 16 C 0.382 3.618 17 O -0.503 6.503 18 C -0.643 4.643 19 H 0.172 0.828 20 C -0.184 4.184 21 N -0.483 5.483 22 Si 0.802 3.198 23 H -0.159 1.159 24 H -0.203 1.203 25 H -0.205 1.205 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.094 0.906 31 H 0.170 0.830 32 H 0.176 0.824 33 H 0.167 0.833 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.973 5.193 -11.935 14.766 hybrid contribution -0.364 -0.829 0.227 0.933 sum 6.609 4.365 -11.708 14.135 Atomic orbital electron populations 1.22770 0.93616 1.01772 1.03535 1.20859 0.95410 0.94530 0.84216 0.90786 1.20935 0.90353 1.01944 0.99483 1.19577 0.96443 0.97193 0.91426 1.21280 0.92790 1.03516 0.99834 1.17722 0.90945 1.02846 0.82183 1.91472 1.80384 1.91714 1.48821 1.21248 1.01945 1.03602 0.90511 1.21157 0.92821 0.97435 0.99168 1.20125 0.94807 1.01155 0.94597 1.19550 0.81816 0.98022 0.91763 0.91513 1.21955 1.00445 0.96868 0.99706 1.48307 1.04227 1.59903 1.26936 1.18464 0.85401 0.74493 0.83471 1.90450 1.79330 1.60832 1.19671 1.23759 1.05715 1.13827 1.20988 0.82836 1.26979 1.01706 0.96585 0.93097 1.70105 1.39569 1.17916 1.20664 0.85195 0.76928 0.78389 0.79286 1.15853 1.20284 1.20466 0.91255 0.90500 0.90691 0.86879 0.90621 0.82951 0.82433 0.83350 0.96327 0.90150 0.92348 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.25 7.41 71.98 0.53 -4.71 16 2 C 0.15 5.15 3.39 44.60 0.15 5.30 16 3 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 4 C -0.09 -2.54 5.15 29.57 0.15 -2.39 16 5 C -0.05 -1.37 5.76 -19.86 -0.11 -1.49 16 6 C -0.16 -4.00 9.57 22.41 0.21 -3.78 16 7 C 0.08 2.10 7.30 22.30 0.16 2.26 16 8 F -0.15 -3.66 17.27 44.97 0.78 -2.89 16 9 C -0.15 -3.69 10.04 22.25 0.22 -3.47 16 10 C -0.09 -2.35 9.00 22.34 0.20 -2.15 16 11 C -0.11 -3.43 5.44 -19.81 -0.11 -3.53 16 12 C 0.19 7.51 3.45 44.25 0.15 7.66 16 13 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 14 C -0.13 -5.69 7.71 71.98 0.55 -5.13 16 15 N -0.65 -28.76 2.94 -782.22 -2.30 -31.06 16 16 C 0.58 31.68 5.78 86.36 0.50 32.18 16 17 O -0.62 -39.30 13.05 -4.32 -0.06 -39.35 16 18 C -0.61 -32.06 7.51 24.83 0.19 -31.88 16 19 H 0.16 6.97 2.67 -33.97 -0.09 6.88 16 20 C 0.03 1.53 5.48 85.30 0.47 1.99 16 21 N -0.85 -51.41 12.28 21.84 0.27 -51.14 16 22 Si 0.98 40.26 29.56 68.60 2.03 42.29 16 23 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 24 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 26 H 0.07 2.81 5.18 -2.38 -0.01 2.80 16 27 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.07 2.47 6.03 -2.38 -0.01 2.46 16 29 H 0.11 2.32 8.11 -2.38 -0.02 2.31 16 30 H 0.08 2.38 7.76 -2.39 -0.02 2.36 16 31 H 0.15 3.16 8.05 -2.91 -0.02 3.13 16 32 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 33 H 0.15 3.40 6.61 -2.91 -0.02 3.38 16 34 H 0.02 0.90 7.84 -2.39 -0.02 0.88 16 35 H 0.08 2.68 6.31 -2.38 -0.02 2.66 16 36 H 0.06 2.93 6.11 -2.39 -0.01 2.91 16 37 H 0.27 14.94 8.29 -92.71 -0.77 14.17 16 Total: -1.00 -72.08 294.85 5.02 -67.07 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 1.02 Total: 24.22 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 3.28 Total: -9.13 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -2.03 Total: -82.20 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.06 Total: -39.35 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -72.08 5.02 -67.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336570053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.623 kcal (2) G-P(sol) polarization free energy of solvation -72.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds