Wall clock time and date at job start Mon Mar 30 2020 02:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46956 * 89.99765 * 8 6 4 10 10 H 1.48497 * 109.47226 * 210.00189 * 8 6 4 11 11 H 1.48501 * 109.47027 * 329.99834 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 2 16 16 C 1.32577 * 120.00085 * 125.00036 * 15 14 12 17 17 C 1.47774 * 120.00340 * 179.97438 * 16 15 14 18 18 C 1.39540 * 120.15329 * 359.72587 * 17 16 15 19 19 C 1.37951 * 119.88219 * 179.74392 * 18 17 16 20 20 C 1.38388 * 120.19445 * 0.55760 * 19 18 17 21 21 C 1.38274 * 120.31130 * 359.68926 * 20 19 18 22 22 C 1.38239 * 120.11789 * 0.03002 * 21 20 19 23 23 F 1.35099 * 120.09777 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 26 26 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 27 27 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 28 28 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 29 29 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 31 31 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 32 32 H 1.07994 * 120.00093 * 304.99370 * 15 14 12 33 33 H 1.08008 * 120.00294 * 359.97438 * 16 15 14 34 34 H 1.08001 * 120.05534 * 0.02562 * 18 17 16 35 35 H 1.08001 * 119.90463 * 180.24719 * 19 18 17 36 36 H 1.07998 * 119.84152 * 179.71942 * 20 19 18 37 37 H 1.08001 * 119.93942 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.3077 4.2605 -3.9000 10 1 4.6982 4.1993 -3.4970 11 1 3.5539 2.2200 -4.3052 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3649 -3.6176 -0.0103 16 6 2.2952 -4.5536 0.9261 17 6 3.2552 -5.6770 0.9209 18 6 4.2328 -5.7590 -0.0713 19 6 5.1295 -6.8074 -0.0678 20 6 5.0549 -7.7837 0.9101 21 6 4.0861 -7.7132 1.8942 22 6 3.1846 -6.6652 1.9063 23 9 2.2379 -6.5970 2.8677 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6083 2.0285 0.5137 28 1 3.1499 1.1385 0.5139 29 1 4.0317 4.4431 -0.8505 30 1 0.7588 -2.5340 0.8844 31 1 0.7590 -2.5261 -0.8955 32 1 3.1236 -3.6761 -0.7767 33 1 1.5367 -4.4951 1.6928 34 1 4.2903 -5.0006 -0.8381 35 1 5.8889 -6.8690 -0.8333 36 1 5.7569 -8.6044 0.9048 37 1 4.0336 -8.4783 2.6547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340830535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:58 Heat of formation + Delta-G solvation = -43.922988 kcal Electronic energy + Delta-G solvation = -20118.065202 eV Core-core repulsion = 16775.081912 eV Total energy + Delta-G solvation = -3342.983290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.97976 -39.28226 -38.86573 -35.19912 -34.62197 -32.64304 -31.22735 -30.67532 -28.26971 -26.87699 -25.59502 -23.64051 -22.79986 -22.01288 -19.51352 -18.47116 -17.78041 -16.57206 -16.44825 -16.39361 -15.91123 -15.69087 -15.26622 -14.89681 -14.40172 -14.30621 -13.83078 -13.39378 -13.09957 -12.82266 -12.58545 -12.51426 -12.23572 -12.10612 -11.86001 -11.64726 -11.26722 -11.08183 -11.06197 -10.90654 -10.56415 -10.35065 -10.16401 -9.63457 -9.03661 -8.94029 -8.44334 -8.13343 -7.65117 -6.04866 -4.09859 0.69046 1.04426 2.40180 3.29283 3.35548 3.38260 3.44177 3.59187 4.00458 4.09726 4.43566 4.53931 4.55553 4.75481 5.00682 5.11645 5.12343 5.18123 5.29413 5.46630 5.51343 5.64624 5.71449 5.73243 5.88310 5.93086 6.00102 6.05501 6.20465 6.25046 6.60602 6.67970 6.76156 7.05344 7.44096 7.53156 7.91422 8.22772 8.40589 8.89330 9.08299 9.55236 11.03263 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.003301 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.235069 B = 8480.479214 C = 9131.599562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.506 3.494 13 O -0.540 6.540 14 C -0.117 4.117 15 C -0.086 4.086 16 C -0.146 4.146 17 C -0.070 4.070 18 C -0.090 4.090 19 C -0.126 4.126 20 C -0.101 4.101 21 C -0.154 4.154 22 C 0.098 3.902 23 F -0.138 7.138 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 -20.728 2.839 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.293 3.707 13 O -0.417 6.417 14 C -0.157 4.157 15 C -0.104 4.104 16 C -0.164 4.164 17 C -0.071 4.071 18 C -0.108 4.108 19 C -0.144 4.144 20 C -0.119 4.119 21 C -0.172 4.172 22 C 0.079 3.921 23 F -0.116 7.116 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.959 -20.516 2.930 20.935 hybrid contribution -0.087 0.476 -0.733 0.878 sum -3.046 -20.040 2.196 20.389 Atomic orbital electron populations 1.21654 0.81422 1.02626 1.00456 1.48175 1.06202 1.07847 1.71375 1.19293 0.92584 0.78081 0.97507 1.21435 1.36521 1.06301 0.92290 0.92465 1.24951 0.95348 0.96411 0.97468 1.69934 1.38368 1.14333 1.30749 0.86487 0.77687 0.78584 0.84604 1.20639 1.21068 1.19890 1.20171 0.88079 0.84802 0.77696 1.90675 1.13868 1.87204 1.49983 1.20868 0.98182 0.92354 1.04297 1.23051 0.97104 0.92491 0.97784 1.21395 0.99632 0.94832 1.00507 1.19089 0.97739 0.95011 0.95256 1.21338 0.93516 0.98248 0.97681 1.21169 0.99380 0.94543 0.99284 1.21028 0.97700 0.99050 0.94098 1.21053 0.96455 0.98501 1.01238 1.17762 0.89501 0.96614 0.88259 1.91474 1.62520 1.96217 1.61428 0.93718 0.90733 0.92387 0.95015 0.93833 0.92698 0.88911 0.87950 0.86044 0.86071 0.84451 0.85225 0.85202 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.25 59.85 0.61 1.89 16 2 N -0.60 -12.78 2.86 -182.95 -0.52 -13.30 16 3 C 0.24 6.45 5.16 -5.20 -0.03 6.42 16 4 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.51 10.44 7.67 -10.98 -0.08 10.35 16 13 O -0.54 -13.59 15.61 5.55 0.09 -13.50 16 14 C -0.12 -1.68 4.70 -29.03 -0.14 -1.82 16 15 C -0.09 -1.22 8.18 -36.21 -0.30 -1.52 16 16 C -0.15 -1.93 9.31 -37.59 -0.35 -2.28 16 17 C -0.07 -0.90 5.87 -104.95 -0.62 -1.52 16 18 C -0.09 -1.04 9.40 -39.20 -0.37 -1.41 16 19 C -0.13 -1.20 10.03 -39.63 -0.40 -1.60 16 20 C -0.10 -0.88 10.04 -39.51 -0.40 -1.28 16 21 C -0.15 -1.52 10.01 -39.57 -0.40 -1.92 16 22 C 0.10 1.20 7.28 -39.02 -0.28 0.91 16 23 F -0.14 -1.76 16.62 2.25 0.04 -1.73 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 26 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 27 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.09 1.12 7.78 -51.93 -0.40 0.72 16 31 H 0.10 1.24 7.40 -51.93 -0.38 0.86 16 32 H 0.12 1.75 6.04 -52.49 -0.32 1.44 16 33 H 0.12 1.50 7.55 -52.48 -0.40 1.10 16 34 H 0.14 1.53 6.17 -52.49 -0.32 1.20 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -33.87 325.34 -7.56 -41.43 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.62 Total: -1.16 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -3.16 Total: -7.45 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.21 Total: -39.31 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.87 -7.56 -41.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340830535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.494 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds