Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99540 * 2 1 4 4 C 1.50692 * 109.47063 * 274.99724 * 3 2 1 5 5 H 1.08003 * 120.00048 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99900 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99439 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00046 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47208 * 90.00061 * 8 6 4 10 10 H 1.48502 * 109.47247 * 210.00382 * 8 6 4 11 11 H 1.48508 * 109.46971 * 330.00173 * 8 6 4 12 12 S 1.65596 * 120.00140 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40170 * 156.46193 * 12 2 1 14 14 O 1.42097 * 106.40616 * 23.53678 * 12 2 1 15 15 N 1.65608 * 107.21450 * 270.00029 * 12 2 1 16 16 C 1.46501 * 120.00079 * 65.00239 * 15 12 2 17 17 C 1.53002 * 109.47163 * 164.99607 * 16 15 12 18 18 N 1.46904 * 112.84528 * 50.33381 * 17 16 15 19 19 C 1.53773 * 113.61673 * 279.13627 * 17 16 15 20 20 C 1.53949 * 87.02061 * 220.04728 * 19 17 16 21 21 C 1.53782 * 113.61206 * 181.52578 * 17 16 15 22 22 H 1.08999 * 109.47596 * 269.99433 * 1 2 3 23 23 H 1.09002 * 109.47465 * 30.00249 * 1 2 3 24 24 H 1.09005 * 109.47295 * 149.99954 * 1 2 3 25 25 H 1.09000 * 109.46914 * 35.00078 * 3 2 1 26 26 H 1.09002 * 109.46223 * 154.99964 * 3 2 1 27 27 H 0.97007 * 119.99652 * 179.97438 * 7 6 4 28 28 H 0.97002 * 119.99894 * 244.99728 * 15 12 2 29 29 H 1.09002 * 109.46709 * 284.99775 * 16 15 12 30 30 H 1.09001 * 109.47081 * 44.99820 * 16 15 12 31 31 H 1.00900 * 110.99925 * 309.66482 * 18 17 16 32 32 H 1.00904 * 111.00136 * 73.61700 * 18 17 16 33 33 H 1.09001 * 113.61648 * 334.56664 * 19 17 16 34 34 H 1.09001 * 113.61352 * 105.46832 * 19 17 16 35 35 H 1.08996 * 113.53850 * 270.81164 * 20 19 17 36 36 H 1.08997 * 113.74290 * 139.94151 * 20 19 17 37 37 H 1.08999 * 113.61270 * 254.52712 * 21 17 16 38 38 H 1.08992 * 113.61289 * 25.35373 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1938 -2.2331 6 6 3.0005 2.9505 -1.6664 7 7 3.5040 3.6465 -0.6706 8 14 3.1784 3.5668 -3.4207 9 1 2.0180 4.4280 -3.7629 10 1 4.4320 4.3532 -3.5445 11 1 3.2265 2.4091 -4.3496 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1564 -0.5449 14 8 1.4114 -2.4063 -0.5454 15 7 2.5381 -1.8592 1.5811 16 6 1.3946 -2.1788 2.4393 17 6 1.8875 -2.8865 3.7031 18 7 2.9854 -2.1704 4.3664 19 6 2.1627 -4.3860 3.5019 20 6 1.5352 -4.6054 4.8905 21 6 0.7558 -3.3001 4.6586 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6500 2.0043 0.5895 26 1 3.1857 1.1177 0.4343 27 1 3.9681 4.4799 -0.8472 28 1 3.4388 -1.8967 1.9392 29 1 0.8793 -1.2588 2.7154 30 1 0.7080 -2.8324 1.9013 31 1 3.7159 -1.9402 3.7095 32 1 2.6468 -1.3434 4.8350 33 1 1.5890 -4.8300 2.6884 34 1 3.2234 -4.6330 3.4572 35 1 2.2542 -4.5453 5.7075 36 1 0.8995 -5.4887 4.9502 37 1 0.6823 -2.6719 5.5463 38 1 -0.2036 -3.4452 4.1621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342524375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = -55.516304 kcal Electronic energy + Delta-G solvation = -20658.630170 eV Core-core repulsion = 17470.508069 eV Total energy + Delta-G solvation = -3188.122101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.68626 -36.63152 -35.52922 -35.18846 -34.61530 -32.45914 -31.51276 -27.81733 -27.08593 -25.82375 -25.08497 -22.46878 -22.30585 -19.24613 -18.78638 -17.42901 -16.86947 -16.56834 -16.10617 -15.74717 -15.36152 -15.03975 -14.52120 -14.25879 -14.06898 -13.40646 -13.32963 -12.91315 -12.46822 -12.34203 -12.18989 -11.88782 -11.65777 -11.57677 -11.41981 -11.18950 -11.09190 -10.99023 -10.74605 -10.70941 -10.54627 -10.35995 -10.05242 -9.79554 -9.39047 -8.88524 -8.47164 -8.10480 -6.09109 -4.13130 1.19558 3.30019 3.36505 3.41949 3.47283 4.06909 4.17922 4.38207 4.43287 4.55120 4.67120 4.72894 5.03838 5.22777 5.26385 5.41950 5.46373 5.56318 5.61196 5.63170 5.77033 5.86004 5.93890 5.95575 6.17584 6.20204 6.26770 6.51987 6.89230 7.09508 7.20341 7.24201 7.38277 7.57429 7.88457 8.17492 8.89293 9.52311 10.99524 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033623 B = 0.004698 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.569352 B = 5958.633856 C = 6143.460709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.996 5.996 3 C 0.258 3.742 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.784 3.216 13 O -0.964 6.964 14 O -0.998 6.998 15 N -1.133 6.133 16 C 0.101 3.899 17 C 0.084 3.916 18 N -0.819 5.819 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.128 4.128 22 H 0.037 0.963 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.264 0.736 28 H 0.407 0.593 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.344 0.656 32 H 0.346 0.654 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 -11.886 11.473 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.839 5.839 3 C 0.136 3.864 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.791 3.209 13 O -0.947 6.947 14 O -0.981 6.981 15 N -0.893 5.893 16 C -0.028 4.028 17 C -0.011 4.011 18 N -0.350 5.350 19 C -0.165 4.165 20 C -0.166 4.166 21 C -0.166 4.166 22 H 0.055 0.945 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.241 0.759 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.365 -12.856 11.111 17.819 hybrid contribution 0.184 1.619 -1.114 1.974 sum -5.181 -11.237 9.997 15.908 Atomic orbital electron populations 1.21365 0.80241 1.03546 1.00066 1.57590 1.14250 1.23311 1.88701 1.19040 0.90933 0.78721 0.97703 1.21496 1.36148 1.06359 0.92933 0.92168 1.24934 0.95044 0.96486 0.97548 1.69917 1.37283 1.15332 1.30978 0.86499 0.77541 0.78841 0.84605 1.20599 1.21022 1.19682 1.01893 0.73354 0.72899 0.72765 1.93645 1.40685 1.84845 1.75573 1.93517 1.67627 1.60186 1.76792 1.56262 1.14220 1.86278 1.32525 1.21868 0.88476 0.99965 0.92539 1.22149 0.92692 0.94319 0.91944 1.58833 1.11748 1.30635 1.33825 1.23014 1.01847 0.94107 0.97558 1.22709 0.99247 0.96867 0.97790 1.22983 0.96694 0.97990 0.98955 0.94462 0.90356 0.91571 0.94792 0.94518 0.92674 0.75928 0.91944 0.90105 0.84158 0.84070 0.89684 0.90968 0.89712 0.91874 0.90967 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.68 59.85 0.64 2.23 16 2 N -1.00 -20.25 3.23 -123.05 -0.40 -20.64 16 3 C 0.26 6.40 5.08 -5.19 -0.03 6.37 16 4 C -0.53 -14.87 9.38 -34.44 -0.32 -15.20 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 S 2.78 54.08 6.10 -107.50 -0.66 53.42 16 13 O -0.96 -22.87 17.11 -57.17 -0.98 -23.85 16 14 O -1.00 -20.48 16.21 -57.17 -0.93 -21.41 16 15 N -1.13 -16.12 5.98 -10.61 -0.06 -16.18 16 16 C 0.10 1.19 5.85 -4.04 -0.02 1.17 16 17 C 0.08 0.83 1.33 -130.79 -0.17 0.66 16 18 N -0.82 -7.89 9.25 1.40 0.01 -7.88 16 19 C -0.13 -1.26 7.45 -25.83 -0.19 -1.45 16 20 C -0.13 -1.10 8.00 -25.83 -0.21 -1.31 16 21 C -0.13 -1.08 7.44 -25.92 -0.19 -1.27 16 22 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 24 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 25 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 26 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.41 5.20 6.81 -34.48 -0.23 4.96 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.97 7.59 -51.93 -0.39 0.58 16 31 H 0.34 3.37 7.02 -39.29 -0.28 3.10 16 32 H 0.35 3.03 9.07 -39.29 -0.36 2.68 16 33 H 0.08 0.85 7.99 -51.93 -0.41 0.43 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -33.33 325.04 -8.77 -42.10 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.78 Total: 5.17 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -0.60 Total: -7.15 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: 0.29 Total: -70.00 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -1.90 Total: -45.26 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 54.08 SS G_CDS: -0.66 Total: 53.42 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.33 -8.77 -42.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342524375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.419 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds