Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99540 * 2 1 4 4 C 1.50692 * 109.47063 * 274.99724 * 3 2 1 5 5 H 1.08003 * 120.00048 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99900 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99439 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00046 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47208 * 90.00061 * 8 6 4 10 10 H 1.48502 * 109.47247 * 210.00382 * 8 6 4 11 11 H 1.48508 * 109.46971 * 330.00173 * 8 6 4 12 12 S 1.65596 * 120.00140 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40170 * 156.46193 * 12 2 1 14 14 O 1.42097 * 106.40616 * 23.53678 * 12 2 1 15 15 N 1.65608 * 107.21450 * 270.00029 * 12 2 1 16 16 C 1.46501 * 120.00079 * 65.00239 * 15 12 2 17 17 C 1.53002 * 109.47163 * 164.99607 * 16 15 12 18 18 N 1.46904 * 112.84528 * 50.33381 * 17 16 15 19 19 C 1.53773 * 113.61673 * 279.13627 * 17 16 15 20 20 C 1.53949 * 87.02061 * 220.04728 * 19 17 16 21 21 C 1.53782 * 113.61206 * 181.52578 * 17 16 15 22 22 H 1.08999 * 109.47596 * 269.99433 * 1 2 3 23 23 H 1.09002 * 109.47465 * 30.00249 * 1 2 3 24 24 H 1.09005 * 109.47295 * 149.99954 * 1 2 3 25 25 H 1.09000 * 109.46914 * 35.00078 * 3 2 1 26 26 H 1.09002 * 109.46223 * 154.99964 * 3 2 1 27 27 H 0.97007 * 119.99652 * 179.97438 * 7 6 4 28 28 H 0.97002 * 119.99894 * 244.99728 * 15 12 2 29 29 H 1.09002 * 109.46709 * 284.99775 * 16 15 12 30 30 H 1.09001 * 109.47081 * 44.99820 * 16 15 12 31 31 H 1.00900 * 110.99925 * 309.66482 * 18 17 16 32 32 H 1.00904 * 111.00136 * 73.61700 * 18 17 16 33 33 H 1.09001 * 113.61648 * 334.56664 * 19 17 16 34 34 H 1.09001 * 113.61352 * 105.46832 * 19 17 16 35 35 H 1.08996 * 113.53850 * 270.81164 * 20 19 17 36 36 H 1.08997 * 113.74290 * 139.94151 * 20 19 17 37 37 H 1.08999 * 113.61270 * 254.52712 * 21 17 16 38 38 H 1.08992 * 113.61289 * 25.35373 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1938 -2.2331 6 6 3.0005 2.9505 -1.6664 7 7 3.5040 3.6465 -0.6706 8 14 3.1784 3.5668 -3.4207 9 1 2.0180 4.4280 -3.7629 10 1 4.4320 4.3532 -3.5445 11 1 3.2265 2.4091 -4.3496 12 16 2.2930 -1.4341 -0.0006 13 8 3.5759 -1.1564 -0.5449 14 8 1.4114 -2.4063 -0.5454 15 7 2.5381 -1.8592 1.5811 16 6 1.3946 -2.1788 2.4393 17 6 1.8875 -2.8865 3.7031 18 7 2.9854 -2.1704 4.3664 19 6 2.1627 -4.3860 3.5019 20 6 1.5352 -4.6054 4.8905 21 6 0.7558 -3.3001 4.6586 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6500 2.0043 0.5895 26 1 3.1857 1.1177 0.4343 27 1 3.9681 4.4799 -0.8472 28 1 3.4388 -1.8967 1.9392 29 1 0.8793 -1.2588 2.7154 30 1 0.7080 -2.8324 1.9013 31 1 3.7159 -1.9402 3.7095 32 1 2.6468 -1.3434 4.8350 33 1 1.5890 -4.8300 2.6884 34 1 3.2234 -4.6330 3.4572 35 1 2.2542 -4.5453 5.7075 36 1 0.8995 -5.4887 4.9502 37 1 0.6823 -2.6719 5.5463 38 1 -0.2036 -3.4452 4.1621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342524375.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = -82.683864 kcal Electronic energy + Delta-G solvation = -20659.808244 eV Core-core repulsion = 17470.508069 eV Total energy + Delta-G solvation = -3189.300175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47083 -38.30061 -37.24028 -36.87746 -35.70071 -34.52031 -32.32994 -29.68941 -28.06064 -26.78885 -26.53379 -24.23175 -23.26948 -20.55189 -19.70279 -19.01764 -18.44098 -18.35241 -17.54660 -16.90998 -16.52924 -16.22420 -15.99557 -15.31634 -15.14151 -14.99405 -14.82852 -14.10047 -13.95541 -13.82229 -13.35653 -13.26230 -13.16771 -13.10461 -13.06490 -12.93542 -12.50473 -12.42434 -12.35751 -11.98806 -11.79911 -11.74954 -11.47867 -11.11022 -10.62237 -10.51579 -9.83486 -9.66941 -8.22536 -6.34325 -0.34825 1.37833 1.40261 1.50747 2.01908 2.39012 2.60475 3.08637 3.39327 3.44237 3.61425 3.82006 3.82753 4.03016 4.08108 4.37480 4.52201 4.61189 4.71378 4.74670 4.83183 4.90239 4.95003 5.05313 5.15071 5.16753 5.17524 5.42034 5.44326 5.51297 5.67228 5.80451 6.00392 6.09228 6.28547 6.48110 6.73847 7.34764 8.84928 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033623 B = 0.004698 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.569352 B = 5958.633856 C = 6143.460709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.002 6.002 3 C 0.273 3.727 4 C -0.552 4.552 5 H 0.050 0.950 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.275 1.275 12 S 2.801 3.199 13 O -1.012 7.012 14 O -1.009 7.009 15 N -1.117 6.117 16 C 0.093 3.907 17 C 0.083 3.917 18 N -0.820 5.820 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.121 4.121 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.029 0.971 26 H 0.017 0.983 27 H 0.268 0.732 28 H 0.415 0.585 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.341 0.659 32 H 0.352 0.648 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 -12.285 12.171 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.844 5.844 3 C 0.149 3.851 4 C -0.591 4.591 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.200 1.200 12 S 2.809 3.191 13 O -0.996 6.996 14 O -0.992 6.992 15 N -0.881 5.881 16 C -0.035 4.035 17 C -0.012 4.012 18 N -0.351 5.351 19 C -0.173 4.173 20 C -0.160 4.160 21 C -0.159 4.159 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.251 0.749 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.473 -13.261 11.815 18.904 hybrid contribution 0.493 1.667 -1.258 2.146 sum -5.981 -11.593 10.557 16.782 Atomic orbital electron populations 1.21602 0.78126 1.03583 1.02515 1.57460 1.15688 1.21892 1.89332 1.18595 0.90400 0.80244 0.95821 1.21847 1.36330 1.06703 0.94254 0.93122 1.25728 0.94732 0.96741 1.01430 1.70000 1.37770 1.15746 1.32755 0.85590 0.78180 0.78296 0.79869 1.18992 1.20313 1.20029 1.01125 0.72019 0.72452 0.73529 1.93575 1.43035 1.85450 1.77569 1.93497 1.67713 1.60190 1.77815 1.55774 1.15652 1.85570 1.31121 1.22177 0.87599 1.00842 0.92873 1.22217 0.93500 0.94006 0.91467 1.58847 1.11625 1.31020 1.33623 1.23081 1.01514 0.94172 0.98567 1.22662 0.99169 0.97548 0.96603 1.23006 0.96519 0.97679 0.98708 0.90793 0.91160 0.90707 0.95282 0.96533 0.92338 0.74884 0.90866 0.89892 0.84451 0.83420 0.89767 0.91802 0.90073 0.90646 0.90241 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.80 10.68 127.77 1.36 4.16 16 2 N -1.00 -40.35 3.23 -543.21 -1.75 -42.10 16 3 C 0.27 13.68 5.08 85.63 0.43 14.11 16 4 C -0.55 -31.29 9.38 25.60 0.24 -31.05 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.76 5.46 84.66 0.46 1.22 16 7 N -0.92 -53.83 13.29 21.45 0.28 -53.55 16 8 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 9 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 S 2.80 108.21 6.10 -56.49 -0.34 107.86 16 13 O -1.01 -48.96 17.11 -128.00 -2.19 -51.15 16 14 O -1.01 -40.59 16.21 -128.00 -2.07 -42.67 16 15 N -1.12 -30.76 5.98 -187.48 -1.12 -31.88 16 16 C 0.09 2.02 5.85 86.38 0.51 2.52 16 17 C 0.08 1.49 1.33 4.05 0.01 1.50 16 18 N -0.82 -14.50 9.25 -149.49 -1.38 -15.89 16 19 C -0.14 -2.46 7.45 31.18 0.23 -2.23 16 20 C -0.12 -1.81 8.00 31.18 0.25 -1.56 16 21 C -0.12 -1.71 7.44 31.12 0.23 -1.48 16 22 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 24 H 0.07 2.27 7.02 -2.38 -0.02 2.25 16 25 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 26 H 0.02 0.89 7.61 -2.39 -0.02 0.88 16 27 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 28 H 0.41 10.36 6.81 -96.74 -0.66 9.70 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.80 7.59 -2.39 -0.02 1.78 16 31 H 0.34 6.33 7.02 -89.69 -0.63 5.70 16 32 H 0.35 5.53 9.07 -89.69 -0.81 4.72 16 33 H 0.08 1.54 7.99 -2.39 -0.02 1.52 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.19 8.10 -2.39 -0.02 1.17 16 Total: -1.00 -70.73 325.04 -3.85 -74.58 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -1.02 Total: 20.95 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 3.73 Total: -12.81 kcal Atomic # 7 Polarization: -139.45 SS G_CDS: -3.97 Total: -143.42 kcal Atomic # 8 Polarization: -89.55 SS G_CDS: -4.26 Total: -93.82 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 108.21 SS G_CDS: -0.34 Total: 107.86 kcal Total: -70.73 -3.85 -74.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342524375.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.101 kcal (2) G-P(sol) polarization free energy of solvation -70.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds