Wall clock time and date at job start Mon Mar 30 2020 01:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46455 * 2 1 4 4 C 1.50698 * 109.47376 * 120.00403 * 2 1 3 5 5 O 1.21289 * 120.00214 * 120.00251 * 4 2 1 6 6 N 1.34778 * 119.99626 * 300.00142 * 4 2 1 7 7 C 1.37102 * 119.99551 * 180.02562 * 6 4 2 8 8 H 1.07997 * 119.99860 * 224.17652 * 7 6 4 9 9 C 1.38948 * 120.00050 * 44.17902 * 7 6 4 10 10 N 1.31414 * 119.99831 * 18.05354 * 9 7 6 11 11 Si 1.86800 * 120.00029 * 198.04450 * 9 7 6 12 12 H 1.48504 * 109.47144 * 180.02562 * 11 9 7 13 13 H 1.48501 * 109.47381 * 300.00342 * 11 9 7 14 14 H 1.48500 * 109.46875 * 60.00584 * 11 9 7 15 15 C 1.46495 * 120.00512 * 0.02562 * 6 4 2 16 16 C 1.52995 * 117.50374 * 189.28301 * 15 6 4 17 17 C 1.52992 * 117.50096 * 120.65813 * 15 6 4 18 18 C 1.50703 * 109.47034 * 240.00794 * 2 1 3 19 19 C 1.38227 * 120.00989 * 299.71928 * 18 2 1 20 20 C 1.38224 * 120.02364 * 179.72601 * 19 18 2 21 21 C 1.38270 * 120.05040 * 0.55021 * 20 19 18 22 22 C 1.38174 * 120.02384 * 359.72622 * 21 20 19 23 23 C 1.38435 * 120.01743 * 119.99867 * 18 2 1 24 24 F 1.35099 * 120.02342 * 0.02562 * 23 18 2 25 25 H 1.09000 * 109.47328 * 299.99315 * 1 2 3 26 26 H 1.09002 * 109.47501 * 60.00115 * 1 2 3 27 27 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99881 * 174.90724 * 10 9 7 29 29 H 1.09011 * 115.54677 * 334.99161 * 15 6 4 30 30 H 1.09005 * 117.49473 * 0.02562 * 16 15 6 31 31 H 1.09004 * 117.50398 * 145.01482 * 16 15 6 32 32 H 1.09001 * 117.49789 * 214.97962 * 17 15 6 33 33 H 1.08992 * 117.50198 * 0.02562 * 17 15 6 34 34 H 1.08003 * 119.98580 * 0.02562 * 19 18 2 35 35 H 1.07999 * 119.97377 * 180.28081 * 20 19 18 36 36 H 1.07999 * 119.98539 * 179.70053 * 21 20 19 37 37 H 1.08003 * 120.00996 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7298 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1643 -0.8961 3.5739 8 1 1.4961 -1.0801 4.4021 9 6 3.4876 -1.3142 3.6426 10 7 4.3819 -0.8011 2.8279 11 14 3.9954 -2.6054 4.8934 12 1 5.4500 -2.8748 4.7641 13 1 3.7041 -2.1098 6.2627 14 1 3.2359 -3.8577 4.6482 15 6 0.8640 0.9407 2.5891 16 6 0.7075 1.5411 3.9875 17 6 -0.4584 0.7886 3.3432 18 6 2.0323 -0.7103 -1.2306 19 6 1.7033 -2.0353 -1.4468 20 6 2.1592 -2.6854 -2.5782 21 6 2.9541 -2.0146 -3.4892 22 6 3.2890 -0.6917 -3.2723 23 6 2.8282 -0.0377 -2.1420 24 9 3.1555 1.2556 -1.9286 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 5.3178 -1.0373 2.9241 29 1 0.8856 1.6297 1.7446 30 1 1.2320 1.0504 4.8075 31 1 0.6263 2.6254 4.0636 32 1 -1.3068 1.3780 2.9953 33 1 -0.7013 -0.1971 3.7396 34 1 1.0858 -2.5614 -0.7338 35 1 1.8979 -3.7193 -2.7486 36 1 3.3137 -2.5249 -4.3705 37 1 3.9096 -0.1678 -3.9842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343291161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:34 Heat of formation + Delta-G solvation = -13.531490 kcal Electronic energy + Delta-G solvation = -22128.238734 eV Core-core repulsion = 18786.573318 eV Total energy + Delta-G solvation = -3341.665416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.49279 -39.39677 -38.13644 -36.05351 -33.74929 -32.57149 -30.86031 -30.14311 -28.99141 -25.17425 -24.07467 -22.35257 -21.76812 -21.56480 -20.76820 -19.08870 -17.22221 -16.64754 -16.07719 -15.77752 -15.34005 -15.14882 -14.68251 -14.31941 -13.82283 -13.68334 -13.67130 -13.10255 -12.75598 -12.71847 -12.22598 -12.16791 -11.68421 -11.59972 -11.33402 -11.05676 -10.87535 -10.80922 -10.76599 -10.53290 -10.41198 -10.15595 -9.86281 -9.67042 -8.70190 -8.51985 -8.29425 -7.90464 -6.98772 -6.08590 -3.85020 1.54885 1.62427 3.30770 3.38191 3.40648 3.94603 4.13610 4.28701 4.64913 4.78841 4.84231 5.02846 5.10670 5.23667 5.32225 5.52896 5.58387 5.59625 5.73081 5.74358 5.79107 5.86028 5.98765 6.19723 6.23468 6.25718 6.30400 6.42569 6.43855 6.50834 6.60298 6.73872 6.78205 6.89364 6.96702 7.27848 7.63263 8.29213 9.08142 9.17942 9.67790 10.31226 11.00139 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017054 B = 0.007198 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.436963 B = 3888.823639 C = 4739.273931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 H 0.089 0.911 4 C 0.493 3.507 5 O -0.524 6.524 6 N -0.425 5.425 7 C -0.350 4.350 8 H 0.077 0.923 9 C 0.074 3.926 10 N -0.831 5.831 11 Si 0.912 3.088 12 H -0.287 1.287 13 H -0.278 1.278 14 H -0.274 1.274 15 C 0.075 3.925 16 C -0.178 4.178 17 C -0.207 4.207 18 C -0.074 4.074 19 C -0.054 4.054 20 C -0.136 4.136 21 C -0.103 4.103 22 C -0.162 4.162 23 C 0.099 3.901 24 F -0.142 7.142 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.264 0.736 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 2.025 -8.471 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.107 0.893 4 C 0.279 3.721 5 O -0.401 6.401 6 N -0.146 5.146 7 C -0.477 4.477 8 H 0.094 0.906 9 C -0.137 4.137 10 N -0.464 5.464 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.204 1.204 14 H -0.200 1.200 15 C -0.031 4.031 16 C -0.215 4.215 17 C -0.246 4.246 18 C -0.076 4.076 19 C -0.072 4.072 20 C -0.154 4.154 21 C -0.121 4.121 22 C -0.181 4.181 23 C 0.079 3.921 24 F -0.120 7.120 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.358 1.494 -8.622 10.817 hybrid contribution 0.574 -0.170 0.710 0.928 sum -5.784 1.324 -7.913 9.890 Atomic orbital electron populations 1.21988 0.93045 1.02647 1.02508 1.20242 0.96893 1.00198 0.92443 0.89285 1.19460 0.83824 0.85697 0.83089 1.90539 1.37404 1.27073 1.85046 1.42687 1.45391 1.21644 1.04838 1.18781 0.94073 1.38032 0.96787 0.90564 1.25241 0.95660 0.96689 0.96103 1.69825 1.01448 1.39492 1.35655 0.86285 0.77464 0.82204 0.80104 1.21247 1.20405 1.19980 1.21754 0.94249 0.92086 0.95009 1.23113 1.01809 0.98206 0.98409 1.23317 0.92344 1.02009 1.06973 1.19537 0.98042 0.95089 0.94906 1.20842 0.97966 0.92675 0.95705 1.21118 0.99385 0.99998 0.94898 1.20851 0.98171 0.93582 0.99505 1.20958 1.03415 0.96072 0.97616 1.17549 0.99169 0.79115 0.96233 1.91449 1.91090 1.34587 1.94891 0.90318 0.92869 0.92350 0.92551 0.87723 0.87482 0.89905 0.89808 0.89020 0.85289 0.85884 0.85735 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.62 37.16 0.32 -2.01 16 2 C -0.08 -1.52 2.09 -92.92 -0.19 -1.72 16 3 H 0.09 1.80 6.56 -51.93 -0.34 1.46 16 4 C 0.49 12.41 6.23 -10.99 -0.07 12.35 16 5 O -0.52 -15.20 12.83 5.55 0.07 -15.13 16 6 N -0.42 -10.55 2.85 -107.74 -0.31 -10.86 16 7 C -0.35 -9.50 7.72 -14.93 -0.12 -9.62 16 8 H 0.08 2.00 7.53 -52.49 -0.40 1.61 16 9 C 0.07 2.09 4.39 -17.47 -0.08 2.01 16 10 N -0.83 -24.97 11.72 55.50 0.65 -24.32 16 11 Si 0.91 22.08 29.59 -169.99 -5.03 17.05 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.08 1.50 4.33 -67.94 -0.29 1.20 16 16 C -0.18 -3.21 9.82 -26.74 -0.26 -3.48 16 17 C -0.21 -3.48 9.48 -26.74 -0.25 -3.73 16 18 C -0.07 -1.45 4.41 -104.55 -0.46 -1.91 16 19 C -0.05 -0.97 7.92 -39.59 -0.31 -1.28 16 20 C -0.14 -2.05 10.04 -39.57 -0.40 -2.45 16 21 C -0.10 -1.44 10.04 -39.59 -0.40 -1.84 16 22 C -0.16 -2.50 10.03 -39.52 -0.40 -2.89 16 23 C 0.10 1.82 7.25 -39.42 -0.29 1.53 16 24 F -0.14 -2.68 16.19 2.25 0.04 -2.64 16 25 H 0.08 1.22 4.44 -51.93 -0.23 0.99 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.93 7.40 -51.93 -0.38 0.55 16 28 H 0.26 7.67 8.32 -40.82 -0.34 7.33 16 29 H 0.11 1.90 6.12 -51.92 -0.32 1.58 16 30 H 0.11 2.17 6.91 -51.93 -0.36 1.81 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 34 H 0.13 2.34 7.52 -52.48 -0.39 1.95 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -32.71 308.41 -7.64 -40.35 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.52 Total: 4.73 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.20 Total: -13.82 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.34 Total: -35.18 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.07 Total: -15.13 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.71 -7.64 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343291161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.820 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds