Wall clock time and date at job start Mon Mar 30 2020 02:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00101 * 2 1 4 4 C 1.50701 * 109.47005 * 293.95552 * 3 2 1 5 5 C 1.38634 * 119.74376 * 269.72133 * 4 3 2 6 6 C 1.37629 * 120.24623 * 179.76399 * 5 4 3 7 7 C 1.40713 * 119.74400 * 0.49082 * 6 5 4 8 8 C 1.41386 * 120.24563 * 179.78794 * 7 6 5 9 9 H 1.08002 * 120.00611 * 204.36647 * 8 7 6 10 10 C 1.39945 * 119.99984 * 24.36462 * 8 7 6 11 11 N 1.30830 * 120.00134 * 17.86308 * 10 8 7 12 12 Si 1.86807 * 120.00109 * 197.86170 * 10 8 7 13 13 H 1.48501 * 109.47091 * 90.00017 * 12 10 8 14 14 H 1.48503 * 109.47028 * 209.99833 * 12 10 8 15 15 H 1.48494 * 109.47107 * 329.99818 * 12 10 8 16 16 C 1.40718 * 119.51199 * 359.76739 * 7 6 5 17 17 C 1.37618 * 119.74361 * 359.97438 * 16 7 6 18 18 C 1.46899 * 110.99839 * 123.95285 * 2 1 3 19 19 H 1.09002 * 109.59890 * 186.36941 * 18 2 1 20 20 C 1.52939 * 109.60268 * 66.04658 * 18 2 1 21 21 C 1.53708 * 112.48890 * 209.96855 * 20 18 2 22 22 S 1.83391 * 104.97118 * 2.82723 * 21 20 18 23 23 C 1.55157 * 109.60498 * 306.51040 * 18 2 1 24 24 H 1.09000 * 109.46774 * 60.00286 * 1 2 3 25 25 H 1.08994 * 109.47538 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47121 * 300.00604 * 1 2 3 27 27 H 1.09001 * 109.47248 * 53.95026 * 3 2 1 28 28 H 1.08999 * 109.47156 * 173.95080 * 3 2 1 29 29 H 1.07999 * 119.88242 * 0.02562 * 5 4 3 30 30 H 1.07995 * 120.12620 * 180.23385 * 6 5 4 31 31 H 0.96993 * 119.99795 * 179.97438 * 11 10 8 32 32 H 1.08001 * 120.12806 * 180.02562 * 16 7 6 33 33 H 1.07997 * 119.87550 * 180.02562 * 17 16 7 34 34 H 1.09002 * 108.89124 * 330.75938 * 20 18 2 35 35 H 1.08993 * 108.89130 * 89.17730 * 20 18 2 36 36 H 1.09003 * 110.34157 * 121.69656 * 21 20 18 37 37 H 1.09000 * 110.34229 * 243.94908 * 21 20 18 38 38 H 1.09002 * 111.12689 * 279.27984 * 23 18 2 39 39 H 1.09000 * 111.12943 * 43.45716 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 2.5029 1.9661 -2.3780 6 6 2.1836 2.5752 -3.5701 7 6 0.9776 3.2907 -3.6875 8 6 0.6411 3.9243 -4.9058 9 1 -0.0354 4.7662 -4.9079 10 6 1.1846 3.4605 -6.1091 11 7 1.7076 2.2629 -6.1721 12 14 1.1632 4.5513 -7.6255 13 1 2.4042 5.3658 -7.6668 14 1 1.0860 3.7047 -8.8432 15 1 -0.0174 5.4503 -7.5720 16 6 0.1088 3.3707 -2.5834 17 6 0.4462 2.7494 -1.4027 18 6 1.9954 -0.7660 1.1376 19 1 3.0792 -0.6579 1.1810 20 6 1.6332 -2.2427 0.9735 21 6 1.4604 -2.9592 2.3223 22 16 1.6936 -1.6514 3.5867 23 6 1.3701 -0.2370 2.4554 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.5611 1.9274 0.8309 28 1 3.0797 1.3444 0.1083 29 1 3.4297 1.4195 -2.2845 30 1 2.8578 2.5077 -4.4110 31 1 2.0839 1.9414 -7.0063 32 1 -0.8195 3.9170 -2.6625 33 1 -0.2192 2.8091 -0.5542 34 1 0.7016 -2.3174 0.4125 35 1 2.4225 -2.7390 0.4089 36 1 0.4606 -3.3864 2.3991 37 1 2.2155 -3.7368 2.4378 38 1 1.8788 0.6643 2.7976 39 1 0.3003 -0.0625 2.3403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343722597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:28 Heat of formation + Delta-G solvation = 8.438196 kcal Electronic energy + Delta-G solvation = -19010.340341 eV Core-core repulsion = 16235.840778 eV Total energy + Delta-G solvation = -2774.499563 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21209 -38.88127 -35.84483 -34.45237 -31.97834 -31.11826 -29.90219 -28.84405 -27.16330 -25.81851 -23.71140 -22.81646 -21.49738 -20.49102 -19.19411 -17.90232 -17.31417 -17.13585 -16.31900 -16.01133 -15.65044 -15.51448 -15.19859 -14.99624 -14.43700 -14.06269 -13.85245 -13.76662 -13.51574 -13.15308 -13.01522 -12.90925 -12.70603 -12.59153 -12.48087 -12.34526 -12.16663 -12.01038 -11.58957 -11.38427 -11.20853 -11.00894 -10.95483 -9.36732 -9.30811 -9.10735 -8.67793 -8.61436 -6.31183 0.83100 0.98608 1.18437 1.34568 1.38110 1.51016 1.51985 2.21309 2.66967 3.08645 3.57417 3.81372 3.85380 4.02392 4.04006 4.12197 4.27440 4.32514 4.45008 4.48852 4.55680 4.62820 4.67165 4.80287 4.83491 4.84599 4.98459 5.09197 5.13599 5.17819 5.26080 5.41618 5.49701 5.73944 5.95858 6.08028 6.14008 6.22748 6.32471 6.42513 6.74426 6.97149 7.07540 8.34892 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.046605 B = 0.003363 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.655896 B = 8322.670656 C = 8537.607314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.534 5.534 3 C 0.126 3.874 4 C -0.193 4.193 5 C -0.086 4.086 6 C -0.192 4.192 7 C 0.080 3.920 8 C -0.504 4.504 9 H 0.072 0.928 10 C 0.035 3.965 11 N -0.825 5.825 12 Si 0.980 3.020 13 H -0.263 1.263 14 H -0.268 1.268 15 H -0.259 1.259 16 C -0.244 4.244 17 C -0.079 4.079 18 C 0.087 3.913 19 H 0.094 0.906 20 C -0.124 4.124 21 C -0.052 4.052 22 S -0.337 6.337 23 C -0.094 4.094 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.287 0.713 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -7.676 12.105 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.257 5.257 3 C -0.001 4.001 4 C -0.195 4.195 5 C -0.105 4.105 6 C -0.211 4.211 7 C 0.078 3.922 8 C -0.534 4.534 9 H 0.090 0.910 10 C -0.179 4.179 11 N -0.451 5.451 12 Si 0.801 3.199 13 H -0.187 1.187 14 H -0.192 1.192 15 H -0.183 1.183 16 C -0.264 4.264 17 C -0.098 4.098 18 C -0.024 4.024 19 H 0.112 0.888 20 C -0.162 4.162 21 C -0.200 4.200 22 S -0.112 6.112 23 C -0.243 4.243 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.766 -8.152 12.693 15.104 hybrid contribution -0.615 0.954 -1.394 1.797 sum 0.151 -7.198 11.299 13.397 Atomic orbital electron populations 1.22472 0.87413 1.02157 1.00743 1.62153 1.08484 1.14252 1.40770 1.20690 0.99339 0.86756 0.93315 1.19244 0.97423 1.06615 0.96190 1.20731 0.98573 0.98207 0.92964 1.21257 0.97909 1.04922 0.97032 1.17940 0.90848 0.90504 0.92938 1.19836 1.26488 1.15003 0.92041 0.90959 1.26730 0.92153 0.95534 1.03512 1.69890 1.29479 1.16298 1.29417 0.85232 0.79874 0.78668 0.76093 1.18736 1.19248 1.18309 1.21141 1.00150 1.09369 0.95739 1.20629 0.95940 0.97058 0.96177 1.22731 1.00238 0.93324 0.86099 0.88829 1.21948 1.04507 0.93217 0.96569 1.23958 1.06487 0.97471 0.92104 1.87911 1.93782 1.06629 1.22910 1.25128 1.05159 0.98185 0.95868 0.92630 0.90429 0.94380 0.94041 0.90627 0.87998 0.88538 0.90253 0.88918 0.87026 0.90115 0.89301 0.88108 0.86892 0.87668 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.32 127.69 1.06 1.59 16 2 N -0.53 -14.77 4.71 -897.39 -4.22 -18.99 16 3 C 0.13 3.84 4.80 85.56 0.41 4.25 16 4 C -0.19 -7.76 4.91 -19.68 -0.10 -7.86 16 5 C -0.09 -3.92 9.67 22.22 0.21 -3.71 16 6 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 7 C 0.08 4.36 5.58 -21.29 -0.12 4.24 16 8 C -0.50 -27.63 9.05 23.46 0.21 -27.42 16 9 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 10 C 0.04 1.81 5.14 85.26 0.44 2.25 16 11 N -0.82 -43.78 10.95 21.83 0.24 -43.55 16 12 Si 0.98 38.69 29.60 68.60 2.03 40.72 16 13 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 14 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 16 C -0.24 -11.94 9.80 22.73 0.22 -11.71 16 17 C -0.08 -3.32 7.92 22.22 0.18 -3.15 16 18 C 0.09 1.89 2.55 45.63 0.12 2.01 16 19 H 0.09 2.09 7.93 -2.39 -0.02 2.07 16 20 C -0.12 -2.29 5.90 30.81 0.18 -2.10 16 21 C -0.05 -0.83 7.38 72.22 0.53 -0.30 16 22 S -0.34 -7.17 23.23 -56.49 -1.31 -8.49 16 23 C -0.09 -1.93 5.99 72.72 0.44 -1.49 16 24 H 0.05 1.82 6.16 -2.39 -0.01 1.81 16 25 H 0.08 1.79 6.06 -2.39 -0.01 1.78 16 26 H 0.04 0.90 6.12 -2.39 -0.01 0.88 16 27 H 0.04 1.16 7.60 -2.39 -0.02 1.14 16 28 H 0.08 2.19 7.87 -2.39 -0.02 2.17 16 29 H 0.10 4.24 8.06 -2.91 -0.02 4.21 16 30 H 0.10 5.40 6.16 -2.91 -0.02 5.39 16 31 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 32 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.11 3.97 8.02 -2.91 -0.02 3.95 16 34 H 0.08 1.55 5.81 -2.39 -0.01 1.54 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 2.13 8.06 -2.39 -0.02 2.11 16 39 H 0.10 2.00 5.76 -2.39 -0.01 1.98 16 Total: -1.00 -58.77 317.78 1.76 -57.02 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 1.04 Total: 26.65 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 3.99 Total: -53.37 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -3.98 Total: -62.54 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -1.31 Total: -8.49 kcal Total: -58.77 1.76 -57.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343722597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.455 kcal (2) G-P(sol) polarization free energy of solvation -58.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds