Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00084 * 2 1 4 4 C 1.50704 * 109.46725 * 274.99348 * 3 2 1 5 5 H 1.08000 * 120.00165 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00035 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99584 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00018 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47065 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47302 * 120.00070 * 8 6 4 11 11 H 1.48504 * 109.46774 * 239.99884 * 8 6 4 12 12 S 1.65597 * 120.00018 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40321 * 336.46148 * 12 2 1 14 14 O 1.42101 * 106.40353 * 203.54303 * 12 2 1 15 15 N 1.65599 * 107.21701 * 90.00022 * 12 2 1 16 16 C 1.46918 * 120.63499 * 269.99812 * 15 12 2 17 17 C 1.53194 * 108.78089 * 233.61256 * 16 15 12 18 18 C 1.53043 * 109.30776 * 305.36420 * 17 16 15 19 19 C 1.53037 * 109.53875 * 61.36647 * 18 17 16 20 20 H 1.08996 * 109.49996 * 58.58482 * 19 18 17 21 21 N 1.46901 * 109.52542 * 178.66561 * 19 18 17 22 22 C 1.46929 * 120.62579 * 90.00382 * 15 12 2 23 23 H 1.08997 * 109.47508 * 270.00546 * 1 2 3 24 24 H 1.09006 * 109.47255 * 30.00573 * 1 2 3 25 25 H 1.09005 * 109.47320 * 150.00618 * 1 2 3 26 26 H 1.09000 * 109.47191 * 34.98934 * 3 2 1 27 27 H 1.08994 * 109.47323 * 154.99712 * 3 2 1 28 28 H 0.97002 * 119.99110 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.58859 * 113.81687 * 16 15 12 30 30 H 1.09002 * 109.58786 * 353.39889 * 16 15 12 31 31 H 1.09003 * 109.49900 * 185.41596 * 17 16 15 32 32 H 1.08990 * 109.49871 * 65.31214 * 17 16 15 33 33 H 1.09004 * 109.46377 * 301.34200 * 18 17 16 34 34 H 1.08996 * 109.45618 * 181.38916 * 18 17 16 35 35 H 1.00898 * 110.99743 * 299.85485 * 21 19 18 36 36 H 1.00903 * 110.99641 * 63.80479 * 21 19 18 37 37 H 1.08998 * 109.59209 * 6.60035 * 22 15 12 38 38 H 1.09003 * 109.58217 * 246.17317 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4155 5 1 1.9283 1.1936 -2.2332 6 6 2.9998 2.9507 -1.6665 7 7 3.5016 3.6478 -0.6706 8 14 3.1777 3.5668 -3.4210 9 1 2.5305 2.6068 -4.3508 10 1 2.5261 4.8952 -3.5476 11 1 4.6186 3.6880 -3.7593 12 16 2.2929 -1.4341 0.0006 13 8 1.4112 -2.4063 0.5455 14 8 3.5759 -1.1565 0.5450 15 7 2.5380 -1.8593 -1.5810 16 6 1.5541 -2.6836 -2.2957 17 6 2.2707 -3.8969 -2.8968 18 6 3.4372 -3.4173 -3.7637 19 6 4.4359 -2.6468 -2.8972 20 1 4.7947 -3.2915 -2.0949 21 7 5.5710 -2.2141 -3.7232 22 6 3.7438 -1.4194 -2.2961 23 1 -0.3634 0.0001 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8901 -0.5138 26 1 1.6500 2.0044 0.5893 27 1 3.1857 1.1177 0.4343 28 1 3.9651 4.4814 -0.8473 29 1 1.0964 -2.0976 -3.0928 30 1 0.7856 -3.0209 -1.6000 31 1 1.5715 -4.4655 -3.5099 32 1 2.6499 -4.5297 -2.0945 33 1 3.0602 -2.7645 -4.5511 34 1 3.9337 -4.2776 -4.2124 35 1 6.0442 -3.0065 -4.1311 36 1 5.2729 -1.5648 -4.4358 37 1 4.4202 -0.9224 -1.6007 38 1 3.4648 -0.7303 -3.0932 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346091302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -79.365122 kcal Electronic energy + Delta-G solvation = -21514.258300 eV Core-core repulsion = 18325.102036 eV Total energy + Delta-G solvation = -3189.156264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.58769 -36.70330 -35.45750 -35.19448 -34.03330 -32.47445 -31.72861 -28.22777 -27.75164 -25.08589 -24.32443 -22.40113 -22.22620 -20.30078 -18.34594 -17.33233 -16.76752 -16.40670 -16.13262 -15.40308 -14.77065 -14.71463 -14.28639 -13.82067 -13.73851 -13.55784 -13.28741 -13.18498 -12.44186 -12.35021 -12.17897 -11.74521 -11.69154 -11.51323 -11.24364 -11.15372 -11.11888 -10.98472 -10.83262 -10.77460 -10.53689 -10.43484 -10.06298 -9.75864 -8.76591 -8.55282 -8.48210 -8.01635 -6.10383 -4.16920 1.25945 3.24249 3.31845 3.33751 3.46349 4.11138 4.36633 4.55217 4.79220 4.84684 4.98098 5.09810 5.23872 5.26987 5.37457 5.53935 5.54704 5.60961 5.82732 5.86859 5.92846 6.07600 6.12975 6.17654 6.25949 6.40793 6.48327 6.58868 6.90227 7.20139 7.34965 7.45171 7.48474 7.65013 7.86567 8.15942 8.87978 9.49073 10.97772 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.008977 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.006021 B = 3118.391580 C = 4190.923259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.997 5.997 3 C 0.243 3.757 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.787 3.213 13 O -1.000 7.000 14 O -0.974 6.974 15 N -1.002 6.002 16 C 0.119 3.881 17 C -0.126 4.126 18 C -0.150 4.150 19 C 0.078 3.922 20 H 0.082 0.918 21 N -0.840 5.840 22 C 0.135 3.865 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.264 0.736 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.339 0.661 36 H 0.341 0.659 37 H 0.104 0.896 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -12.131 -6.530 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.839 5.839 3 C 0.121 3.879 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.208 1.208 12 S 2.796 3.204 13 O -0.984 6.984 14 O -0.958 6.958 15 N -0.840 5.840 16 C -0.007 4.007 17 C -0.166 4.166 18 C -0.190 4.190 19 C -0.035 4.035 20 H 0.100 0.900 21 N -0.369 5.369 22 C 0.009 3.991 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.123 0.877 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.256 -12.107 -5.007 13.294 hybrid contribution -0.596 0.294 -2.257 2.353 sum -2.852 -11.812 -7.265 14.158 Atomic orbital electron populations 1.21204 0.80219 1.01970 1.00568 1.57675 1.14155 1.23536 1.88532 1.19232 0.92193 0.78875 0.97586 1.21560 1.36454 1.06759 0.92884 0.91961 1.24958 0.95230 0.96538 0.97175 1.69947 1.36813 1.15130 1.30820 0.86520 0.77960 0.78688 0.84673 1.19822 1.21064 1.20755 1.01730 0.73113 0.72652 0.72889 1.93519 1.67491 1.60458 1.76910 1.93574 1.40680 1.85219 1.76352 1.58136 1.29036 1.64801 1.32055 1.21349 0.90815 0.91343 0.97201 1.21801 0.97619 0.97695 0.99499 1.22361 0.97626 1.00128 0.98844 1.21824 0.89348 0.96619 0.95758 0.89975 1.58757 1.28387 1.20137 1.29593 1.21253 0.85135 0.94535 0.98177 0.93781 0.90845 0.93064 0.94483 0.93087 0.92643 0.91726 0.89351 0.91155 0.91487 0.91841 0.92293 0.84815 0.84579 0.87746 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.86 10.31 59.84 0.62 2.47 16 2 N -1.00 -20.91 3.23 -123.05 -0.40 -21.31 16 3 C 0.24 6.09 5.41 -5.19 -0.03 6.06 16 4 C -0.54 -13.95 9.38 -34.44 -0.32 -14.27 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 8 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 S 2.79 56.49 6.10 -107.50 -0.66 55.83 16 13 O -1.00 -20.51 15.80 -57.17 -0.90 -21.41 16 14 O -0.97 -22.99 15.28 -57.17 -0.87 -23.87 16 15 N -1.00 -17.00 3.35 -113.52 -0.38 -17.38 16 16 C 0.12 1.61 6.47 -3.71 -0.02 1.59 16 17 C -0.13 -1.42 6.08 -26.61 -0.16 -1.59 16 18 C -0.15 -1.65 5.46 -26.69 -0.15 -1.80 16 19 C 0.08 1.05 3.40 -67.59 -0.23 0.82 16 20 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 21 N -0.84 -10.26 9.26 -4.56 -0.04 -10.31 16 22 C 0.14 2.30 6.02 -3.71 -0.02 2.27 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.25 8.07 -51.93 -0.42 0.84 16 25 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 26 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 27 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.09 1.18 6.92 -51.93 -0.36 0.83 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.34 3.29 9.04 -39.29 -0.36 2.94 16 36 H 0.34 3.90 8.98 -39.29 -0.35 3.54 16 37 H 0.10 2.09 6.92 -51.93 -0.36 1.73 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -31.43 319.15 -9.10 -40.53 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.96 Total: 5.03 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.42 Total: -2.81 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -0.08 Total: -73.64 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.78 Total: -45.28 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 56.49 SS G_CDS: -0.66 Total: 55.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.43 -9.10 -40.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346091302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.831 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds