Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 120.00084 * 2 1 4 4 C 1.50704 * 109.46725 * 274.99348 * 3 2 1 5 5 H 1.08000 * 120.00165 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00035 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99584 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00018 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47065 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47302 * 120.00070 * 8 6 4 11 11 H 1.48504 * 109.46774 * 239.99884 * 8 6 4 12 12 S 1.65597 * 120.00018 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.40321 * 336.46148 * 12 2 1 14 14 O 1.42101 * 106.40353 * 203.54303 * 12 2 1 15 15 N 1.65599 * 107.21701 * 90.00022 * 12 2 1 16 16 C 1.46918 * 120.63499 * 269.99812 * 15 12 2 17 17 C 1.53194 * 108.78089 * 233.61256 * 16 15 12 18 18 C 1.53043 * 109.30776 * 305.36420 * 17 16 15 19 19 C 1.53037 * 109.53875 * 61.36647 * 18 17 16 20 20 H 1.08996 * 109.49996 * 58.58482 * 19 18 17 21 21 N 1.46901 * 109.52542 * 178.66561 * 19 18 17 22 22 C 1.46929 * 120.62579 * 90.00382 * 15 12 2 23 23 H 1.08997 * 109.47508 * 270.00546 * 1 2 3 24 24 H 1.09006 * 109.47255 * 30.00573 * 1 2 3 25 25 H 1.09005 * 109.47320 * 150.00618 * 1 2 3 26 26 H 1.09000 * 109.47191 * 34.98934 * 3 2 1 27 27 H 1.08994 * 109.47323 * 154.99712 * 3 2 1 28 28 H 0.97002 * 119.99110 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.58859 * 113.81687 * 16 15 12 30 30 H 1.09002 * 109.58786 * 353.39889 * 16 15 12 31 31 H 1.09003 * 109.49900 * 185.41596 * 17 16 15 32 32 H 1.08990 * 109.49871 * 65.31214 * 17 16 15 33 33 H 1.09004 * 109.46377 * 301.34200 * 18 17 16 34 34 H 1.08996 * 109.45618 * 181.38916 * 18 17 16 35 35 H 1.00898 * 110.99743 * 299.85485 * 21 19 18 36 36 H 1.00903 * 110.99641 * 63.80479 * 21 19 18 37 37 H 1.08998 * 109.59209 * 6.60035 * 22 15 12 38 38 H 1.09003 * 109.58217 * 246.17317 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7655 -1.4155 5 1 1.9283 1.1936 -2.2332 6 6 2.9998 2.9507 -1.6665 7 7 3.5016 3.6478 -0.6706 8 14 3.1777 3.5668 -3.4210 9 1 2.5305 2.6068 -4.3508 10 1 2.5261 4.8952 -3.5476 11 1 4.6186 3.6880 -3.7593 12 16 2.2929 -1.4341 0.0006 13 8 1.4112 -2.4063 0.5455 14 8 3.5759 -1.1565 0.5450 15 7 2.5380 -1.8593 -1.5810 16 6 1.5541 -2.6836 -2.2957 17 6 2.2707 -3.8969 -2.8968 18 6 3.4372 -3.4173 -3.7637 19 6 4.4359 -2.6468 -2.8972 20 1 4.7947 -3.2915 -2.0949 21 7 5.5710 -2.2141 -3.7232 22 6 3.7438 -1.4194 -2.2961 23 1 -0.3634 0.0001 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8901 -0.5138 26 1 1.6500 2.0044 0.5893 27 1 3.1857 1.1177 0.4343 28 1 3.9651 4.4814 -0.8473 29 1 1.0964 -2.0976 -3.0928 30 1 0.7856 -3.0209 -1.6000 31 1 1.5715 -4.4655 -3.5099 32 1 2.6499 -4.5297 -2.0945 33 1 3.0602 -2.7645 -4.5511 34 1 3.9337 -4.2776 -4.2124 35 1 6.0442 -3.0065 -4.1311 36 1 5.2729 -1.5648 -4.4358 37 1 4.4202 -0.9224 -1.6007 38 1 3.4648 -0.7303 -3.0932 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346091302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -104.463763 kcal Electronic energy + Delta-G solvation = -21515.346659 eV Core-core repulsion = 18325.102036 eV Total energy + Delta-G solvation = -3190.244622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.70501 -38.39981 -37.21079 -36.91581 -35.15218 -34.47382 -32.80221 -29.69103 -29.27060 -26.78555 -25.52565 -24.14995 -23.43943 -21.41422 -19.84321 -18.91418 -18.51027 -18.23061 -17.47964 -16.87531 -16.44185 -15.75455 -15.65293 -15.28487 -14.98722 -14.83064 -14.69867 -14.51790 -14.01670 -13.97279 -13.59515 -13.41820 -13.21614 -13.00955 -12.96904 -12.91968 -12.48497 -12.40272 -12.29146 -12.08373 -11.95332 -11.89442 -11.71011 -11.51540 -10.58736 -10.02358 -9.75289 -9.52007 -8.15984 -6.30022 -0.34350 1.43379 1.44701 1.55916 1.94470 2.43011 2.52992 3.15902 3.31794 3.64265 3.77319 3.86330 4.06708 4.09502 4.18876 4.31351 4.41860 4.56908 4.69045 4.79132 4.84352 4.90450 4.96685 5.02724 5.06146 5.12467 5.22278 5.27727 5.39646 5.45517 5.64368 5.76197 5.95883 6.10170 6.25744 6.66231 6.81941 7.40260 8.92695 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.008977 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.006021 B = 3118.391580 C = 4190.923259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.005 6.005 3 C 0.258 3.742 4 C -0.536 4.536 5 H 0.072 0.928 6 C 0.009 3.991 7 N -0.930 5.930 8 Si 0.962 3.038 9 H -0.256 1.256 10 H -0.282 1.282 11 H -0.282 1.282 12 S 2.796 3.204 13 O -1.002 7.002 14 O -1.015 7.015 15 N -0.997 5.997 16 C 0.108 3.892 17 C -0.124 4.124 18 C -0.141 4.141 19 C 0.084 3.916 20 H 0.070 0.930 21 N -0.850 5.850 22 C 0.135 3.865 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.356 0.644 36 H 0.347 0.653 37 H 0.064 0.936 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 -13.678 -9.271 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.846 5.846 3 C 0.134 3.866 4 C -0.575 4.575 5 H 0.090 0.910 6 C -0.191 4.191 7 N -0.570 5.570 8 Si 0.787 3.213 9 H -0.179 1.179 10 H -0.208 1.208 11 H -0.208 1.208 12 S 2.806 3.194 13 O -0.986 6.986 14 O -1.000 7.000 15 N -0.838 5.838 16 C -0.016 4.016 17 C -0.164 4.164 18 C -0.180 4.180 19 C -0.030 4.030 20 H 0.089 0.911 21 N -0.382 5.382 22 C 0.009 3.991 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.170 0.830 36 H 0.161 0.839 37 H 0.082 0.918 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.357 -13.688 -7.751 16.084 hybrid contribution -0.285 0.722 -1.364 1.569 sum -3.643 -12.966 -9.115 16.263 Atomic orbital electron populations 1.21458 0.78005 1.03405 1.01848 1.57604 1.15691 1.22150 1.89131 1.18773 0.90702 0.80148 0.96988 1.21800 1.35794 1.06636 0.93273 0.90975 1.25855 0.94945 0.96889 1.01364 1.70086 1.37978 1.15712 1.33242 0.85448 0.77808 0.78300 0.79775 1.17914 1.20844 1.20822 1.01239 0.72137 0.72354 0.73647 1.93505 1.67313 1.60140 1.77612 1.93518 1.42797 1.85720 1.77938 1.57875 1.29871 1.64985 1.31088 1.21720 0.90380 0.92077 0.97456 1.21832 0.98169 0.96621 0.99755 1.22288 0.96800 1.00681 0.98277 1.21662 0.90239 0.94872 0.96205 0.91138 1.58671 1.28230 1.21244 1.30029 1.21214 0.84723 0.96227 0.96978 0.92690 0.90702 0.90285 0.96296 0.96666 0.92616 0.90135 0.89106 0.87927 0.92057 0.91053 0.89846 0.82971 0.83916 0.91759 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.30 10.31 127.77 1.32 4.62 16 2 N -1.00 -42.51 3.23 -543.23 -1.75 -44.26 16 3 C 0.26 13.34 5.41 85.63 0.46 13.81 16 4 C -0.54 -28.04 9.38 25.60 0.24 -27.80 16 5 H 0.07 3.56 7.81 -2.91 -0.02 3.53 16 6 C 0.01 0.47 5.46 84.65 0.46 0.93 16 7 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 8 Si 0.96 41.87 29.54 68.60 2.03 43.89 16 9 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 S 2.80 114.43 6.10 -56.49 -0.34 114.08 16 13 O -1.00 -40.36 15.80 -128.00 -2.02 -42.38 16 14 O -1.02 -50.13 15.28 -128.00 -1.96 -52.09 16 15 N -1.00 -33.02 3.35 -513.06 -1.72 -34.73 16 16 C 0.11 2.64 6.47 86.36 0.56 3.20 16 17 C -0.12 -2.35 6.08 30.67 0.19 -2.16 16 18 C -0.14 -2.60 5.46 30.62 0.17 -2.43 16 19 C 0.08 2.14 3.40 44.99 0.15 2.29 16 20 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 21 N -0.85 -19.36 9.26 -168.35 -1.56 -20.92 16 22 C 0.13 4.55 6.02 86.36 0.52 5.07 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.07 2.48 8.07 -2.38 -0.02 2.46 16 25 H 0.08 2.19 7.79 -2.38 -0.02 2.17 16 26 H 0.02 1.03 8.11 -2.39 -0.02 1.01 16 27 H 0.02 0.90 6.91 -2.39 -0.02 0.88 16 28 H 0.26 14.64 8.31 -92.71 -0.77 13.86 16 29 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.09 2.18 6.92 -2.39 -0.02 2.17 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.36 6.06 9.04 -89.70 -0.81 5.25 16 36 H 0.35 7.23 8.98 -89.69 -0.81 6.42 16 37 H 0.06 2.68 6.92 -2.39 -0.02 2.67 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -69.11 319.15 -3.52 -72.64 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.55 Total: 20.44 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.07 Total: -2.47 kcal Atomic # 7 Polarization: -149.37 SS G_CDS: -4.74 Total: -154.11 kcal Atomic # 8 Polarization: -90.49 SS G_CDS: -3.98 Total: -94.47 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 114.43 SS G_CDS: -0.34 Total: 114.08 kcal Total: -69.11 -3.52 -72.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346091302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.827 kcal (2) G-P(sol) polarization free energy of solvation -69.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds