Wall clock time and date at job start Mon Mar 30 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.50704 * 109.46732 * 240.00458 * 2 1 3 5 5 O 1.21281 * 120.00205 * 271.64009 * 4 2 1 6 6 N 1.34777 * 119.99893 * 91.64153 * 4 2 1 7 7 C 1.46501 * 120.00292 * 355.95972 * 6 4 2 8 8 C 1.50701 * 109.47251 * 275.45360 * 7 6 4 9 9 H 1.07993 * 119.99716 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99977 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00013 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00130 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46775 * 60.00195 * 12 10 8 14 14 H 1.48501 * 109.47207 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47174 * 300.00641 * 12 10 8 16 16 C 1.46499 * 119.99971 * 175.96030 * 6 4 2 17 17 C 1.52994 * 109.47679 * 267.12529 * 16 6 4 18 18 C 1.47200 * 109.47844 * 184.55605 * 17 16 6 19 19 N 7.03399 * 123.30019 * 254.18975 * 2 1 3 20 20 N 1.46497 * 109.47409 * 120.00356 * 2 1 3 21 21 C 1.34426 * 126.81922 * 34.70983 * 20 2 1 22 22 N 1.30839 * 108.07661 * 179.89487 * 21 20 2 23 23 C 1.33248 * 109.82391 * 0.37631 * 22 21 20 24 24 N 1.30707 * 108.94560 * 359.76987 * 23 22 21 25 25 H 1.09003 * 109.46862 * 185.90446 * 1 2 3 26 26 H 1.09002 * 109.46991 * 305.90187 * 1 2 3 27 27 H 1.08995 * 109.47660 * 65.90558 * 1 2 3 28 28 H 1.09003 * 109.46980 * 35.45403 * 7 6 4 29 29 H 1.08997 * 109.47288 * 155.44885 * 7 6 4 30 30 H 0.97003 * 120.00175 * 179.97438 * 11 10 8 31 31 H 1.09007 * 109.46808 * 27.12382 * 16 6 4 32 32 H 1.09004 * 109.47381 * 147.11760 * 16 6 4 33 33 H 1.09003 * 109.46620 * 304.55779 * 17 16 6 34 34 H 1.08998 * 109.47179 * 64.55074 * 17 16 6 35 35 H 1.08001 * 125.96943 * 0.03650 * 21 20 2 36 36 H 1.07997 * 125.52522 * 179.79804 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.2060 -1.9105 -1.2096 6 7 2.2884 -0.0119 -2.3545 7 6 1.9951 1.4224 -2.4084 8 6 0.5471 1.6258 -2.7730 9 1 -0.0908 0.7720 -2.9475 10 6 0.0368 2.9018 -2.8838 11 7 0.8138 3.9415 -2.6718 12 14 -1.7579 3.1539 -3.3364 13 1 -2.6213 2.5097 -2.3143 14 1 -2.0551 4.6079 -3.3910 15 1 -2.0238 2.5446 -4.6642 16 6 2.8600 -0.6871 -3.5222 17 6 4.3849 -0.5704 -3.4832 18 6 4.9533 -1.1525 -4.7099 19 7 5.3919 -1.6018 -5.6566 20 7 2.0184 -0.6907 1.1961 21 6 1.4530 -1.7486 1.8028 22 7 2.1931 -2.0692 2.8330 23 6 3.2304 -1.2374 2.9206 24 7 3.1670 -0.3753 1.9402 25 1 -0.3633 -1.0223 0.1057 26 1 -0.3633 0.6026 0.8325 27 1 -0.3634 0.4195 -0.9381 28 1 2.1908 1.8702 -1.4341 29 1 2.6287 1.8948 -3.1591 30 1 0.4549 4.8393 -2.7501 31 1 2.5756 -1.7394 -3.5087 32 1 2.4830 -0.2206 -4.4324 33 1 4.6672 0.4802 -3.4149 34 1 4.7683 -1.1067 -2.6151 35 1 0.5472 -2.2484 1.4926 36 1 3.9990 -1.2705 3.6785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347728404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:33 Heat of formation + Delta-G solvation = 69.931839 kcal Electronic energy + Delta-G solvation = -21506.839583 eV Core-core repulsion = 18221.006121 eV Total energy + Delta-G solvation = -3285.833462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.04592 -41.00257 -38.04512 -36.88766 -35.97957 -34.65524 -32.68824 -32.25112 -30.68093 -29.08109 -26.63434 -25.08544 -24.83332 -22.84325 -22.46985 -20.24749 -18.84156 -18.43842 -18.35467 -18.07375 -16.94110 -16.43617 -16.18195 -16.03524 -15.74272 -15.63528 -15.08996 -14.72199 -14.59333 -14.27921 -13.77840 -13.60645 -13.49660 -13.39830 -13.29564 -13.12842 -12.93061 -12.72884 -12.61513 -12.26500 -12.07861 -11.82897 -11.63334 -11.39746 -10.98122 -10.71881 -10.57723 -10.31938 -9.61379 -8.15130 -6.26956 0.68039 1.14039 1.49320 1.52879 1.57042 1.59610 1.67995 1.73373 2.06451 2.23623 2.47521 3.08015 3.18324 3.48648 3.52245 3.58968 3.96376 4.05796 4.06115 4.08954 4.39074 4.48769 4.70592 4.74014 4.78723 4.89100 4.97740 5.23987 5.28380 5.31970 5.56375 5.63859 5.80896 5.88794 6.08821 6.41649 6.49713 6.83103 7.10222 7.17184 7.44433 8.90463 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.007548 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.900959 B = 3708.478412 C = 5766.866553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.122 0.878 4 C 0.515 3.485 5 O -0.575 6.575 6 N -0.585 5.585 7 C 0.242 3.758 8 C -0.540 4.540 9 H 0.066 0.934 10 C 0.032 3.968 11 N -0.916 5.916 12 Si 0.942 3.058 13 H -0.263 1.263 14 H -0.293 1.293 15 H -0.277 1.277 16 C 0.122 3.878 17 C -0.032 4.032 18 C 0.244 3.756 19 N -0.486 5.486 20 N -0.367 5.367 21 C 0.273 3.727 22 N -0.572 5.572 23 C 0.195 3.805 24 N -0.354 5.354 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.240 0.760 36 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.115 -4.971 6.273 8.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.140 0.860 4 C 0.301 3.699 5 O -0.456 6.456 6 N -0.314 5.314 7 C 0.122 3.878 8 C -0.579 4.579 9 H 0.084 0.916 10 C -0.170 4.170 11 N -0.555 5.555 12 Si 0.768 3.232 13 H -0.187 1.187 14 H -0.219 1.219 15 H -0.203 1.203 16 C -0.003 4.003 17 C -0.073 4.073 18 C -0.073 4.073 19 N -0.164 5.164 20 N -0.157 5.157 21 C -0.024 4.024 22 N -0.301 5.301 23 C -0.108 4.108 24 N -0.181 5.181 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.256 0.744 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.082 -5.691 4.881 7.575 hybrid contribution -1.094 0.746 -0.284 1.354 sum -0.012 -4.944 4.597 6.751 Atomic orbital electron populations 1.22225 0.88255 1.04411 1.06580 1.21279 0.98228 0.97023 0.79328 0.86003 1.20597 0.77178 0.86911 0.85188 1.90655 1.55145 1.15162 1.84616 1.48067 1.59829 1.11620 1.11891 1.19356 0.95949 0.74237 0.98228 1.21593 0.95832 0.92231 1.48199 0.91585 1.25471 1.00839 0.95792 0.94877 1.69979 1.37250 0.98932 1.49319 0.85851 0.81472 0.76734 0.79142 1.18744 1.21879 1.20281 1.21262 0.90567 0.99310 0.89153 1.19681 0.95355 1.03435 0.88802 1.29143 0.92262 0.91927 0.93955 1.81216 1.10817 1.11421 1.12937 1.50323 1.18705 1.24851 1.21793 1.26456 0.99596 0.87360 0.88955 1.70606 1.07947 1.29721 1.21795 1.26649 0.97662 0.89232 0.97234 1.78000 1.04378 1.26471 1.09282 0.89930 0.89641 0.87912 0.94824 0.94314 0.92481 0.89830 0.88900 0.85237 0.86707 0.74375 0.73625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 8.95 71.98 0.64 -3.51 16 2 C 0.15 4.56 3.16 44.25 0.14 4.70 16 3 H 0.12 4.10 5.92 -2.39 -0.01 4.08 16 4 C 0.51 17.29 6.78 87.66 0.59 17.88 16 5 O -0.58 -21.41 15.98 -3.03 -0.05 -21.45 16 6 N -0.58 -19.03 2.47 -826.14 -2.04 -21.07 16 7 C 0.24 9.15 4.98 85.63 0.43 9.58 16 8 C -0.54 -22.65 7.45 25.60 0.19 -22.46 16 9 H 0.07 2.74 7.26 -2.91 -0.02 2.72 16 10 C 0.03 1.42 5.46 84.65 0.46 1.88 16 11 N -0.92 -44.57 13.29 21.45 0.28 -44.29 16 12 Si 0.94 36.53 29.54 68.60 2.03 38.56 16 13 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 14 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 16 C 0.12 3.38 5.40 86.38 0.47 3.85 16 17 C -0.03 -0.73 6.03 28.79 0.17 -0.55 16 18 C 0.24 6.48 15.43 89.44 1.38 7.86 16 19 N -0.49 -15.42 18.54 20.01 0.37 -15.05 16 20 N -0.37 -11.32 3.31 -335.02 -1.11 -12.43 16 21 C 0.27 7.54 11.47 180.36 2.07 9.61 16 22 N -0.57 -16.65 11.19 -204.00 -2.28 -18.93 16 23 C 0.19 5.30 13.03 180.76 2.36 7.66 16 24 N -0.35 -11.35 12.70 -61.25 -0.78 -12.13 16 25 H 0.08 1.82 6.92 -2.39 -0.02 1.80 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.10 3.15 5.44 -2.39 -0.01 3.14 16 28 H 0.03 1.35 5.93 -2.39 -0.01 1.34 16 29 H 0.04 1.53 8.03 -2.39 -0.02 1.51 16 30 H 0.27 12.63 8.31 -92.71 -0.77 11.86 16 31 H 0.08 2.40 7.29 -2.38 -0.02 2.39 16 32 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 33 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.24 4.87 7.17 -2.91 -0.02 4.84 16 36 H 0.25 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -58.93 319.30 6.44 -52.50 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.11 Total: 17.80 kcal Atomic # 6 Polarization: 27.60 SS G_CDS: 8.90 Total: 36.50 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -5.56 Total: -123.90 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -58.93 6.44 -52.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347728404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.427 kcal (2) G-P(sol) polarization free energy of solvation -58.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds