Wall clock time and date at job start Mon Mar 30 2020 01:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.50696 * 109.47268 * 174.99506 * 4 2 1 6 6 H 1.08004 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00438 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99387 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00351 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47234 * 90.00117 * 9 7 5 11 11 H 1.48497 * 109.47345 * 210.00260 * 9 7 5 12 12 H 1.48502 * 109.47091 * 330.00344 * 9 7 5 13 13 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 14 14 C 1.46894 * 110.99877 * 59.30391 * 13 2 1 15 15 C 1.53247 * 109.33761 * 172.74635 * 14 13 2 16 16 N 1.47078 * 108.51983 * 53.82835 * 15 14 13 17 17 S 1.65598 * 120.87784 * 128.83725 * 16 15 14 18 18 N 1.65596 * 107.21860 * 269.97530 * 17 16 15 19 19 O 1.42103 * 106.40431 * 23.51842 * 17 16 15 20 20 O 1.42103 * 106.39896 * 156.43604 * 17 16 15 21 21 C 1.47079 * 118.23878 * 308.81806 * 16 15 14 22 22 C 1.46901 * 110.99837 * 294.99892 * 13 2 1 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 27 27 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 28 28 H 0.97002 * 119.99896 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.49382 * 292.70001 * 14 13 2 30 30 H 1.08997 * 109.49567 * 52.78887 * 14 13 2 31 31 H 1.09001 * 109.62711 * 294.12140 * 15 14 13 32 32 H 1.08996 * 109.62884 * 173.53854 * 15 14 13 33 33 H 0.97004 * 120.00241 * 150.00203 * 18 17 16 34 34 H 0.97006 * 120.00439 * 329.99986 * 18 17 16 35 35 H 1.09001 * 109.62327 * 291.47088 * 21 16 15 36 36 H 1.09000 * 109.62919 * 170.89645 * 21 16 15 37 37 H 1.08999 * 109.49550 * 307.21347 * 22 13 2 38 38 H 1.09006 * 109.49044 * 67.26931 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0860 -0.5393 7 6 4.2305 -1.1932 -2.3579 8 7 3.5765 -1.8375 -3.2996 9 14 6.0922 -1.0619 -2.4363 10 1 6.7002 -2.2146 -1.7243 11 1 6.5297 -1.0700 -3.8554 12 1 6.5268 0.2033 -1.7915 13 7 2.0197 -0.6925 1.1994 14 6 1.5352 -2.0786 1.2416 15 6 2.2096 -2.8168 2.4029 16 7 1.9934 -2.0445 3.6358 17 16 1.3900 -2.7686 4.9974 18 7 -0.2597 -2.6421 4.9298 19 8 1.6915 -4.1526 4.8832 20 8 1.8090 -1.9700 6.0957 21 6 2.3278 -0.6123 3.6275 22 6 1.6488 0.0391 2.4180 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2056 27 1 1.6054 -0.2616 -2.1370 28 1 4.0608 -2.2442 -4.0351 29 1 0.4549 -2.0820 1.3869 30 1 1.7780 -2.5776 0.3035 31 1 3.2786 -2.9053 2.2090 32 1 1.7707 -3.8087 2.5105 33 1 -0.8156 -3.3221 5.3417 34 1 -0.6703 -1.8881 4.4783 35 1 3.4081 -0.4890 3.5513 36 1 1.9670 -0.1467 4.5447 37 1 1.9740 1.0760 2.3330 38 1 0.5668 0.0066 2.5466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351474310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:53 Heat of formation + Delta-G solvation = -69.505385 kcal Electronic energy + Delta-G solvation = -20985.555703 eV Core-core repulsion = 17796.826989 eV Total energy + Delta-G solvation = -3188.728713 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.05169 -37.24195 -35.87589 -35.58542 -33.27633 -32.71043 -31.03919 -30.42322 -27.40207 -25.73754 -23.72722 -23.01905 -21.02734 -19.59402 -18.93548 -17.87978 -17.54873 -16.61604 -16.22183 -15.72618 -15.26845 -14.69843 -14.55152 -14.44650 -14.15228 -13.56625 -13.16281 -12.62545 -12.33679 -12.24472 -12.19215 -12.12304 -11.87253 -11.73827 -11.61463 -11.35573 -11.14055 -10.85168 -10.68446 -10.64959 -10.42234 -10.33174 -9.99142 -9.32771 -9.06584 -9.00247 -8.29981 -7.58906 -5.93479 -3.91745 0.54900 2.85373 3.37466 3.43941 3.47536 3.51015 4.37320 4.45869 4.53323 4.69268 5.20236 5.33339 5.40138 5.44035 5.47916 5.61649 5.68167 5.76035 5.84410 5.85916 5.96709 6.03277 6.13423 6.26460 6.30948 6.43760 6.54211 6.68903 6.87751 6.91643 7.44570 7.58688 7.80665 7.91929 8.07337 8.51737 9.14559 9.70806 11.18291 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024854 B = 0.005140 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.326156 B = 5445.694325 C = 5881.838702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.072 0.928 4 C 0.028 3.972 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.507 5.507 14 C 0.041 3.959 15 C 0.127 3.873 16 N -1.002 6.002 17 S 2.794 3.206 18 N -1.263 6.263 19 O -0.983 6.983 20 O -0.986 6.986 21 C 0.125 3.875 22 C 0.038 3.962 23 H 0.051 0.949 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.258 0.742 29 H 0.027 0.973 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.416 0.584 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 0.799 13.773 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.090 0.910 4 C -0.009 4.009 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.231 5.231 14 C -0.089 4.089 15 C 0.002 3.998 16 N -0.844 5.844 17 S 2.799 3.201 18 N -0.935 5.935 19 O -0.967 6.967 20 O -0.968 6.968 21 C 0.000 4.000 22 C -0.092 4.092 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.245 0.755 34 H 0.240 0.760 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.673 0.243 14.329 16.256 hybrid contribution -0.570 0.271 -0.503 0.807 sum -8.243 0.514 13.826 16.105 Atomic orbital electron populations 1.22529 0.99788 1.01237 1.00745 1.21948 0.89995 0.98541 0.91636 0.90996 1.19245 0.96503 0.95303 0.89854 1.21158 0.91672 1.33190 1.07081 0.92070 1.25002 0.98044 0.95819 0.95938 1.69956 1.35279 1.36819 1.12341 0.86625 0.86343 0.78375 0.76764 1.20881 1.21668 1.20048 1.61969 1.59219 1.01076 1.00853 1.22522 0.95778 0.90910 0.99662 1.21653 1.02884 0.93258 0.81995 1.57864 1.78737 1.19101 1.28728 1.01603 0.72780 0.72987 0.72728 1.53673 1.28489 1.37290 1.74086 1.93618 1.83496 1.33186 1.86372 1.93620 1.81135 1.71097 1.50991 1.21594 1.01940 0.78384 0.98112 1.22481 0.97046 0.98495 0.91207 0.92998 0.94137 0.92484 0.96172 0.96290 0.93270 0.95459 0.87670 0.89674 0.89499 0.75499 0.76022 0.89907 0.89640 0.89957 0.95312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 8.51 37.16 0.32 -2.50 16 2 C 0.09 1.59 2.29 -67.71 -0.16 1.44 16 3 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 4 C 0.03 0.66 4.27 -27.89 -0.12 0.54 16 5 C -0.49 -13.11 8.84 -34.44 -0.30 -13.41 16 6 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.51 -8.49 4.33 -226.34 -0.98 -9.47 16 14 C 0.04 0.64 4.77 -3.70 -0.02 0.62 16 15 C 0.13 1.79 6.53 -3.60 -0.02 1.76 16 16 N -1.00 -12.55 3.39 -113.24 -0.38 -12.94 16 17 S 2.79 33.80 6.70 -107.50 -0.72 33.08 16 18 N -1.26 -10.16 9.58 60.35 0.58 -9.58 16 19 O -0.98 -14.96 16.92 -57.17 -0.97 -15.92 16 20 O -0.99 -14.61 16.92 -57.17 -0.97 -15.57 16 21 C 0.13 1.52 6.53 -3.61 -0.02 1.50 16 22 C 0.04 0.49 5.14 -3.70 -0.02 0.47 16 23 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 24 H 0.04 0.53 6.69 -51.93 -0.35 0.19 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.02 0.50 6.02 -51.93 -0.31 0.19 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.38 6.71 -51.93 -0.35 0.04 16 30 H 0.11 1.94 5.87 -51.93 -0.31 1.63 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.11 7.22 -51.93 -0.37 0.73 16 33 H 0.42 2.63 8.96 -34.47 -0.31 2.32 16 34 H 0.41 2.63 8.96 -34.47 -0.31 2.32 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 0.88 7.22 -51.93 -0.37 0.50 16 37 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 38 H 0.03 0.34 6.81 -51.93 -0.35 -0.02 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -33.31 310.08 -8.94 -42.25 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.44 Total: 0.82 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.44 Total: -8.25 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.05 Total: -57.60 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.93 Total: -31.49 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 33.80 SS G_CDS: -0.72 Total: 33.08 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.31 -8.94 -42.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351474310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.258 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds