Wall clock time and date at job start Mon Mar 30 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 C 1.50696 * 109.47268 * 174.99506 * 4 2 1 6 6 H 1.08004 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00438 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99387 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00351 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47234 * 90.00117 * 9 7 5 11 11 H 1.48497 * 109.47345 * 210.00260 * 9 7 5 12 12 H 1.48502 * 109.47091 * 330.00344 * 9 7 5 13 13 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 14 14 C 1.46894 * 110.99877 * 59.30391 * 13 2 1 15 15 C 1.53247 * 109.33761 * 172.74635 * 14 13 2 16 16 N 1.47078 * 108.51983 * 53.82835 * 15 14 13 17 17 S 1.65598 * 120.87784 * 128.83725 * 16 15 14 18 18 N 1.65596 * 107.21860 * 269.97530 * 17 16 15 19 19 O 1.42103 * 106.40431 * 23.51842 * 17 16 15 20 20 O 1.42103 * 106.39896 * 156.43604 * 17 16 15 21 21 C 1.47079 * 118.23878 * 308.81806 * 16 15 14 22 22 C 1.46901 * 110.99837 * 294.99892 * 13 2 1 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.08998 * 109.46934 * 294.99762 * 4 2 1 27 27 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 28 28 H 0.97002 * 119.99896 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.49382 * 292.70001 * 14 13 2 30 30 H 1.08997 * 109.49567 * 52.78887 * 14 13 2 31 31 H 1.09001 * 109.62711 * 294.12140 * 15 14 13 32 32 H 1.08996 * 109.62884 * 173.53854 * 15 14 13 33 33 H 0.97004 * 120.00241 * 150.00203 * 18 17 16 34 34 H 0.97006 * 120.00439 * 329.99986 * 18 17 16 35 35 H 1.09001 * 109.62327 * 291.47088 * 21 16 15 36 36 H 1.09000 * 109.62919 * 170.89645 * 21 16 15 37 37 H 1.08999 * 109.49550 * 307.21347 * 22 13 2 38 38 H 1.09006 * 109.49044 * 67.26931 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0790 -0.0860 -0.5393 7 6 4.2305 -1.1932 -2.3579 8 7 3.5765 -1.8375 -3.2996 9 14 6.0922 -1.0619 -2.4363 10 1 6.7002 -2.2146 -1.7243 11 1 6.5297 -1.0700 -3.8554 12 1 6.5268 0.2033 -1.7915 13 7 2.0197 -0.6925 1.1994 14 6 1.5352 -2.0786 1.2416 15 6 2.2096 -2.8168 2.4029 16 7 1.9934 -2.0445 3.6358 17 16 1.3900 -2.7686 4.9974 18 7 -0.2597 -2.6421 4.9298 19 8 1.6915 -4.1526 4.8832 20 8 1.8090 -1.9700 6.0957 21 6 2.3278 -0.6123 3.6275 22 6 1.6488 0.0391 2.4180 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2056 27 1 1.6054 -0.2616 -2.1370 28 1 4.0608 -2.2442 -4.0351 29 1 0.4549 -2.0820 1.3869 30 1 1.7780 -2.5776 0.3035 31 1 3.2786 -2.9053 2.2090 32 1 1.7707 -3.8087 2.5105 33 1 -0.8156 -3.3221 5.3417 34 1 -0.6703 -1.8881 4.4783 35 1 3.4081 -0.4890 3.5513 36 1 1.9670 -0.1467 4.5447 37 1 1.9740 1.0760 2.3330 38 1 0.5668 0.0066 2.5466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351474310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:52 Heat of formation + Delta-G solvation = -97.604316 kcal Electronic energy + Delta-G solvation = -20986.774164 eV Core-core repulsion = 17796.826989 eV Total energy + Delta-G solvation = -3189.947174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27525 -38.32342 -36.97430 -36.87128 -34.66793 -34.01690 -32.22563 -31.80030 -29.15246 -26.91628 -25.18913 -24.55688 -22.25609 -20.79717 -19.99604 -18.94743 -18.44165 -18.28876 -17.57719 -16.78920 -16.53484 -16.46615 -15.71661 -15.57598 -15.48409 -14.80319 -14.57898 -13.96357 -13.73594 -13.57078 -13.42345 -13.26765 -13.21608 -13.05638 -12.86884 -12.82285 -12.59520 -12.42619 -12.30400 -11.89648 -11.86101 -11.56064 -11.30289 -11.04532 -10.94248 -10.43430 -10.17110 -8.83159 -8.06967 -6.10589 -0.42567 1.43987 1.45260 1.54867 1.90431 2.49817 2.60969 3.12978 3.30887 3.46408 3.65930 4.11340 4.24605 4.29831 4.34769 4.44621 4.48861 4.61630 4.62956 4.82716 4.87666 5.01343 5.05193 5.12875 5.17219 5.26830 5.30230 5.34956 5.53867 5.57113 5.76804 5.94980 6.35480 6.36812 6.48680 6.58473 7.04206 7.55459 9.04735 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024854 B = 0.005140 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.326156 B = 5445.694325 C = 5881.838702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 H 0.067 0.933 4 C 0.032 3.968 5 C -0.495 4.495 6 H 0.058 0.942 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.951 3.049 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.267 1.267 13 N -0.531 5.531 14 C 0.046 3.954 15 C 0.133 3.867 16 N -1.000 6.000 17 S 2.818 3.182 18 N -1.245 6.245 19 O -1.015 7.015 20 O -1.010 7.010 21 C 0.124 3.876 22 C 0.039 3.961 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.003 0.997 27 H -0.010 1.010 28 H 0.257 0.743 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.427 0.573 34 H 0.425 0.575 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 1.609 15.574 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 H 0.085 0.915 4 C -0.005 4.005 5 C -0.533 4.533 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.778 3.222 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.255 5.255 14 C -0.083 4.083 15 C 0.008 3.992 16 N -0.842 5.842 17 S 2.823 3.177 18 N -0.923 5.923 19 O -0.999 6.999 20 O -0.993 6.993 21 C -0.001 4.001 22 C -0.090 4.090 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.008 0.992 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.259 0.741 34 H 0.255 0.745 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.516 1.070 16.151 18.290 hybrid contribution -0.352 0.029 -1.036 1.095 sum -8.867 1.099 15.115 17.558 Atomic orbital electron populations 1.22392 0.97085 1.01661 1.02121 1.21610 0.92095 0.97314 0.90205 0.91510 1.19119 0.95015 0.94701 0.91662 1.21499 0.93363 1.32046 1.06438 0.92349 1.25776 1.02312 0.95873 0.95903 1.70079 1.36858 1.38159 1.13082 0.85657 0.81355 0.78545 0.76657 1.20625 1.21579 1.19167 1.61828 1.60345 1.01698 1.01649 1.22393 0.97133 0.90324 0.98499 1.21481 1.01701 0.93895 0.82167 1.57752 1.79202 1.19234 1.27991 1.00704 0.73323 0.71737 0.71937 1.53211 1.26899 1.38139 1.74063 1.93578 1.84492 1.35129 1.86667 1.93595 1.82177 1.71499 1.52026 1.21678 1.01485 0.78091 0.98852 1.22568 0.98621 0.98427 0.89433 0.93014 0.90985 0.92855 0.97920 0.99188 0.93412 0.93298 0.91310 0.91570 0.88235 0.74111 0.74519 0.91009 0.87126 0.89133 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.96 8.51 71.98 0.61 -4.35 16 2 C 0.10 3.47 2.29 44.92 0.10 3.57 16 3 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 4 C 0.03 1.56 4.27 29.85 0.13 1.69 16 5 C -0.49 -26.80 8.84 25.60 0.23 -26.58 16 6 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -56.20 13.29 21.45 0.28 -55.92 16 9 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.53 -17.12 4.33 -870.02 -3.77 -20.88 16 14 C 0.05 1.40 4.77 86.39 0.41 1.82 16 15 C 0.13 3.63 6.53 86.35 0.56 4.19 16 16 N -1.00 -23.03 3.39 -512.17 -1.73 -24.77 16 17 S 2.82 61.96 6.70 -56.49 -0.38 61.58 16 18 N -1.24 -15.99 9.58 37.02 0.35 -15.63 16 19 O -1.02 -29.37 16.92 -128.00 -2.17 -31.54 16 20 O -1.01 -27.65 16.92 -128.00 -2.17 -29.81 16 21 C 0.12 2.70 6.53 86.35 0.56 3.26 16 22 C 0.04 0.89 5.14 86.38 0.44 1.34 16 23 H 0.05 1.47 6.56 -2.39 -0.02 1.46 16 24 H 0.07 1.61 6.69 -2.39 -0.02 1.60 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 26 H 0.00 0.14 6.02 -2.39 -0.01 0.12 16 27 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 28 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.05 1.26 6.71 -2.39 -0.02 1.25 16 30 H 0.07 2.61 5.87 -2.39 -0.01 2.60 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.10 2.44 7.22 -2.39 -0.02 2.42 16 33 H 0.43 4.05 8.96 -96.74 -0.87 3.19 16 34 H 0.43 3.69 8.96 -96.74 -0.87 2.83 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.11 1.89 7.22 -2.39 -0.02 1.87 16 37 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16 38 H 0.05 0.99 6.81 -2.38 -0.02 0.98 16 Total: -1.00 -72.29 310.08 -4.68 -76.97 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -0.65 Total: 8.02 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 3.51 Total: -14.75 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -4.86 Total: -117.20 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: -4.33 Total: -61.35 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 61.96 SS G_CDS: -0.38 Total: 61.58 kcal Total: -72.29 -4.68 -76.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351474310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.635 kcal (2) G-P(sol) polarization free energy of solvation -72.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds