Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47137 * 2 1 4 4 C 1.53002 * 109.46682 * 119.99017 * 2 1 3 5 5 C 1.50707 * 109.46980 * 183.37944 * 4 2 1 6 6 H 1.07999 * 119.99988 * 5.04836 * 5 4 2 7 7 C 1.37875 * 119.99897 * 184.76698 * 5 4 2 8 8 N 1.31510 * 119.99978 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47212 * 59.99923 * 9 7 5 11 11 H 1.48493 * 109.47306 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47077 * 300.00128 * 9 7 5 13 13 N 1.46892 * 109.47343 * 239.99058 * 2 1 3 14 14 C 1.46907 * 111.00069 * 73.00843 * 13 2 1 15 15 C 1.53232 * 109.34330 * 172.74689 * 14 13 2 16 16 N 1.47082 * 108.52162 * 53.82675 * 15 14 13 17 17 S 1.65600 * 120.88070 * 128.79471 * 16 15 14 18 18 N 1.65600 * 107.21865 * 270.02491 * 17 16 15 19 19 O 1.42098 * 106.40167 * 23.56525 * 17 16 15 20 20 O 1.42102 * 106.40413 * 156.48080 * 17 16 15 21 21 C 1.47074 * 118.23721 * 308.81546 * 16 15 14 22 22 C 1.46900 * 111.00225 * 308.70719 * 13 2 1 23 23 H 1.08997 * 109.47695 * 300.00623 * 1 2 3 24 24 H 1.09000 * 109.46884 * 60.00769 * 1 2 3 25 25 H 1.09002 * 109.47591 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47005 * 63.38546 * 4 2 1 27 27 H 1.08998 * 109.47431 * 303.38125 * 4 2 1 28 28 H 0.97003 * 119.99834 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.48693 * 292.70702 * 14 13 2 30 30 H 1.08997 * 109.49002 * 52.78346 * 14 13 2 31 31 H 1.09007 * 109.62998 * 294.12255 * 15 14 13 32 32 H 1.08998 * 109.63339 * 173.54115 * 15 14 13 33 33 H 0.96995 * 119.99719 * 359.97438 * 18 17 16 34 34 H 0.96999 * 119.99543 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.63202 * 291.47156 * 21 16 15 36 36 H 1.08999 * 109.63142 * 170.89731 * 21 16 15 37 37 H 1.09001 * 109.48947 * 307.20772 * 22 13 2 38 38 H 1.08994 * 109.49466 * 67.26524 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7211 1.2494 5 6 3.5446 -0.6490 1.2921 6 1 4.0787 -0.0713 0.5522 7 6 4.2390 -1.3157 2.2791 8 7 3.5883 -2.0150 3.1830 9 14 6.1040 -1.2258 2.3324 10 1 6.5271 0.1890 2.4893 11 1 6.6055 -2.0231 3.4803 12 1 6.6623 -1.7722 1.0694 13 7 2.0196 -0.6926 -1.1992 14 6 1.8173 0.1281 -2.4008 15 6 2.5000 -0.5451 -3.5961 16 7 2.0083 -1.9276 -3.6972 17 16 1.4210 -2.5183 -5.1285 18 7 -0.2048 -2.2051 -5.1578 19 8 2.0006 -1.7274 -6.1570 20 8 1.5564 -3.9314 -5.0652 21 6 2.0518 -2.7714 -2.4934 22 6 1.3866 -2.0106 -1.3414 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.7268 -1.7648 1.2197 27 1 1.6279 -0.2433 2.1383 28 1 4.0768 -2.4838 3.8776 29 1 0.7498 0.2256 -2.5990 30 1 2.2502 1.1159 -2.2435 31 1 3.5796 -0.5505 -3.4459 32 1 2.2573 -0.0024 -4.5097 33 1 -0.6247 -1.7507 -4.4107 34 1 -0.7373 -2.4766 -5.9217 35 1 3.0882 -2.9908 -2.2372 36 1 1.5128 -3.7007 -2.6779 37 1 1.5073 -2.5737 -0.4160 38 1 0.3252 -1.8833 -1.5540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351474311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = -69.260784 kcal Electronic energy + Delta-G solvation = -20986.186317 eV Core-core repulsion = 17797.468211 eV Total energy + Delta-G solvation = -3188.718107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.05193 -37.21744 -35.86369 -35.59347 -33.26727 -32.70098 -31.06440 -30.43898 -27.37596 -25.75691 -23.69929 -23.08635 -20.99684 -19.59184 -18.98129 -17.91647 -17.55963 -16.28024 -16.24188 -15.99695 -15.19259 -14.69676 -14.57704 -14.47970 -14.16734 -13.58527 -13.14635 -12.61913 -12.33309 -12.22162 -12.16273 -12.10830 -11.86537 -11.69879 -11.62036 -11.37446 -11.14362 -10.86497 -10.62343 -10.59573 -10.50668 -10.36442 -10.03315 -9.36720 -9.07234 -8.99710 -8.28455 -7.57800 -5.91539 -3.89432 0.53906 2.82386 3.39647 3.43993 3.47329 3.49606 4.36015 4.53023 4.54580 4.65267 5.20137 5.33684 5.38922 5.44525 5.46418 5.58176 5.66681 5.75874 5.83489 5.86456 5.95553 6.03252 6.12080 6.22540 6.29667 6.41750 6.52621 6.66003 6.89243 6.90141 7.44635 7.57445 7.81041 7.93058 8.08444 8.53382 9.15473 9.72472 11.20285 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.005177 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.509503 B = 5407.664095 C = 5849.299952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.031 3.969 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.506 5.506 14 C 0.039 3.961 15 C 0.127 3.873 16 N -1.000 6.000 17 S 2.795 3.205 18 N -1.266 6.266 19 O -0.987 6.987 20 O -0.984 6.984 21 C 0.125 3.875 22 C 0.043 3.957 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.022 0.978 27 H 0.015 0.985 28 H 0.258 0.742 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.414 0.586 34 H 0.415 0.585 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 1.802 -13.859 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.088 0.912 4 C -0.007 4.007 5 C -0.528 4.528 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.229 5.229 14 C -0.091 4.091 15 C 0.001 3.999 16 N -0.843 5.843 17 S 2.800 3.200 18 N -0.939 5.939 19 O -0.970 6.970 20 O -0.967 6.967 21 C 0.000 4.000 22 C -0.087 4.087 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.240 0.760 34 H 0.244 0.756 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.636 1.114 -14.368 16.309 hybrid contribution -0.530 0.417 0.369 0.768 sum -8.166 1.531 -13.999 16.278 Atomic orbital electron populations 1.22527 0.99692 1.01350 1.00668 1.21948 0.90047 0.98293 0.91819 0.91187 1.19189 0.96427 0.95454 0.89583 1.21077 0.91456 1.29344 1.10951 0.92312 1.24982 0.97989 0.95848 0.95943 1.69943 1.35288 1.33189 1.16047 0.86698 0.86400 0.77795 0.77254 1.20573 1.21708 1.20366 1.61967 1.57730 1.02002 1.01242 1.22483 0.97755 0.97581 0.91313 1.21600 1.00470 0.79570 0.98245 1.57768 1.76995 1.22381 1.27135 1.01592 0.72820 0.73373 0.72196 1.53617 1.30555 1.78321 1.31378 1.93612 1.76505 1.71107 1.55759 1.93624 1.85867 1.31208 1.86005 1.21682 1.03511 0.91897 0.82939 1.22487 0.94696 0.92177 0.99308 0.92490 0.94294 0.92775 0.95969 0.96670 0.93243 0.95444 0.89860 0.89820 0.89541 0.75976 0.75579 0.89526 0.89437 0.88146 0.95411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.41 37.15 0.31 -2.47 16 2 C 0.09 1.59 2.26 -67.72 -0.15 1.44 16 3 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 4 C 0.03 0.72 4.40 -27.88 -0.12 0.60 16 5 C -0.49 -13.06 8.79 -34.44 -0.30 -13.36 16 6 H 0.06 1.56 7.75 -52.49 -0.41 1.16 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.51 -8.45 4.23 -226.35 -0.96 -9.41 16 14 C 0.04 0.51 5.31 -3.70 -0.02 0.49 16 15 C 0.13 1.56 6.53 -3.60 -0.02 1.54 16 16 N -1.00 -12.52 3.39 -113.24 -0.38 -12.90 16 17 S 2.79 33.93 6.70 -107.50 -0.72 33.21 16 18 N -1.27 -10.22 9.58 60.35 0.58 -9.64 16 19 O -0.99 -14.66 16.92 -57.17 -0.97 -15.62 16 20 O -0.98 -15.10 16.92 -57.17 -0.97 -16.07 16 21 C 0.12 1.73 6.53 -3.60 -0.02 1.70 16 22 C 0.04 0.65 4.58 -3.70 -0.02 0.64 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.51 6.97 -51.93 -0.36 0.15 16 25 H 0.05 0.81 6.48 -51.93 -0.34 0.47 16 26 H 0.02 0.56 6.38 -51.93 -0.33 0.23 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.32 7.05 -51.93 -0.37 -0.04 16 30 H 0.08 1.06 7.96 -51.93 -0.41 0.64 16 31 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.09 0.92 7.22 -51.93 -0.37 0.54 16 33 H 0.41 2.69 8.96 -34.47 -0.31 2.39 16 34 H 0.42 2.59 8.96 -34.47 -0.31 2.28 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.09 7.22 -51.93 -0.37 0.71 16 37 H 0.10 1.78 6.24 -51.93 -0.32 1.45 16 38 H 0.03 0.37 6.67 -51.93 -0.35 0.02 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -33.48 310.78 -8.95 -42.44 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.49 Total: 0.52 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -0.45 Total: -8.09 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.03 Total: -57.63 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.93 Total: -31.69 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 33.93 SS G_CDS: -0.72 Total: 33.21 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.48 -8.95 -42.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351474311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.822 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds