Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47137 * 2 1 4 4 C 1.53002 * 109.46682 * 119.99017 * 2 1 3 5 5 C 1.50707 * 109.46980 * 183.37944 * 4 2 1 6 6 H 1.07999 * 119.99988 * 5.04836 * 5 4 2 7 7 C 1.37875 * 119.99897 * 184.76698 * 5 4 2 8 8 N 1.31510 * 119.99978 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47212 * 59.99923 * 9 7 5 11 11 H 1.48493 * 109.47306 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47077 * 300.00128 * 9 7 5 13 13 N 1.46892 * 109.47343 * 239.99058 * 2 1 3 14 14 C 1.46907 * 111.00069 * 73.00843 * 13 2 1 15 15 C 1.53232 * 109.34330 * 172.74689 * 14 13 2 16 16 N 1.47082 * 108.52162 * 53.82675 * 15 14 13 17 17 S 1.65600 * 120.88070 * 128.79471 * 16 15 14 18 18 N 1.65600 * 107.21865 * 270.02491 * 17 16 15 19 19 O 1.42098 * 106.40167 * 23.56525 * 17 16 15 20 20 O 1.42102 * 106.40413 * 156.48080 * 17 16 15 21 21 C 1.47074 * 118.23721 * 308.81546 * 16 15 14 22 22 C 1.46900 * 111.00225 * 308.70719 * 13 2 1 23 23 H 1.08997 * 109.47695 * 300.00623 * 1 2 3 24 24 H 1.09000 * 109.46884 * 60.00769 * 1 2 3 25 25 H 1.09002 * 109.47591 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47005 * 63.38546 * 4 2 1 27 27 H 1.08998 * 109.47431 * 303.38125 * 4 2 1 28 28 H 0.97003 * 119.99834 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.48693 * 292.70702 * 14 13 2 30 30 H 1.08997 * 109.49002 * 52.78346 * 14 13 2 31 31 H 1.09007 * 109.62998 * 294.12255 * 15 14 13 32 32 H 1.08998 * 109.63339 * 173.54115 * 15 14 13 33 33 H 0.96995 * 119.99719 * 359.97438 * 18 17 16 34 34 H 0.96999 * 119.99543 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.63202 * 291.47156 * 21 16 15 36 36 H 1.08999 * 109.63142 * 170.89731 * 21 16 15 37 37 H 1.09001 * 109.48947 * 307.20772 * 22 13 2 38 38 H 1.08994 * 109.49466 * 67.26524 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7211 1.2494 5 6 3.5446 -0.6490 1.2921 6 1 4.0787 -0.0713 0.5522 7 6 4.2390 -1.3157 2.2791 8 7 3.5883 -2.0150 3.1830 9 14 6.1040 -1.2258 2.3324 10 1 6.5271 0.1890 2.4893 11 1 6.6055 -2.0231 3.4803 12 1 6.6623 -1.7722 1.0694 13 7 2.0196 -0.6926 -1.1992 14 6 1.8173 0.1281 -2.4008 15 6 2.5000 -0.5451 -3.5961 16 7 2.0083 -1.9276 -3.6972 17 16 1.4210 -2.5183 -5.1285 18 7 -0.2048 -2.2051 -5.1578 19 8 2.0006 -1.7274 -6.1570 20 8 1.5564 -3.9314 -5.0652 21 6 2.0518 -2.7714 -2.4934 22 6 1.3866 -2.0106 -1.3414 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.7268 -1.7648 1.2197 27 1 1.6279 -0.2433 2.1383 28 1 4.0768 -2.4838 3.8776 29 1 0.7498 0.2256 -2.5990 30 1 2.2502 1.1159 -2.2435 31 1 3.5796 -0.5505 -3.4459 32 1 2.2573 -0.0024 -4.5097 33 1 -0.6247 -1.7507 -4.4107 34 1 -0.7373 -2.4766 -5.9217 35 1 3.0882 -2.9908 -2.2372 36 1 1.5128 -3.7007 -2.6779 37 1 1.5073 -2.5737 -0.4160 38 1 0.3252 -1.8833 -1.5540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351474311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = -97.437349 kcal Electronic energy + Delta-G solvation = -20987.408145 eV Core-core repulsion = 17797.468211 eV Total energy + Delta-G solvation = -3189.939934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26333 -38.30212 -36.96799 -36.87547 -34.66209 -34.00903 -32.24404 -31.80997 -29.12775 -26.93108 -25.08941 -24.68034 -22.21872 -20.80911 -20.02705 -18.97908 -18.45332 -18.29017 -17.24248 -17.06912 -16.51016 -16.40568 -15.72080 -15.60515 -15.51258 -14.79070 -14.58354 -13.94570 -13.73615 -13.56359 -13.40079 -13.23231 -13.22143 -13.02659 -12.88837 -12.78833 -12.59628 -12.42108 -12.31950 -11.92856 -11.87666 -11.51726 -11.32702 -11.05809 -10.95881 -10.42512 -10.19266 -8.81072 -8.05467 -6.08697 -0.43935 1.44787 1.46581 1.53474 1.87114 2.50654 2.59823 3.12781 3.32195 3.51424 3.63009 4.10771 4.23822 4.28600 4.34957 4.44988 4.47859 4.61724 4.63368 4.82231 4.87343 5.01177 5.04109 5.11010 5.17414 5.28780 5.30621 5.35796 5.52992 5.57002 5.76406 5.95130 6.34644 6.37246 6.50523 6.59051 7.05267 7.56739 9.06101 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024609 B = 0.005177 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.509503 B = 5407.664095 C = 5849.299952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.067 0.933 4 C 0.035 3.965 5 C -0.492 4.492 6 H 0.057 0.943 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.274 1.274 13 N -0.532 5.532 14 C 0.040 3.960 15 C 0.126 3.874 16 N -0.998 5.998 17 S 2.819 3.181 18 N -1.247 6.247 19 O -1.012 7.012 20 O -1.017 7.017 21 C 0.130 3.870 22 C 0.047 3.953 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.001 0.999 27 H -0.012 1.012 28 H 0.257 0.743 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.425 0.575 34 H 0.427 0.573 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.738 2.768 -15.639 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.085 0.915 4 C -0.003 4.003 5 C -0.531 4.531 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.256 5.256 14 C -0.089 4.089 15 C 0.001 3.999 16 N -0.840 5.840 17 S 2.824 3.176 18 N -0.926 5.926 19 O -0.995 6.995 20 O -1.000 7.000 21 C 0.005 3.995 22 C -0.082 4.082 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.006 0.994 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.255 0.745 34 H 0.259 0.741 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.473 2.099 -16.168 18.374 hybrid contribution -0.308 0.131 0.898 0.959 sum -8.781 2.230 -15.270 17.755 Atomic orbital electron populations 1.22390 0.96960 1.01814 1.02059 1.21606 0.92180 0.97110 0.90290 0.91506 1.19066 0.94971 0.94654 0.91576 1.21440 0.93168 1.28275 1.10214 0.92461 1.25759 1.02285 0.95905 0.95913 1.70071 1.36831 1.34454 1.16880 0.85727 0.81402 0.78033 0.77123 1.19667 1.21734 1.19986 1.61800 1.58831 1.02912 1.02058 1.22549 0.99487 0.97170 0.89674 1.21662 0.99785 0.79489 0.98984 1.57635 1.77462 1.22364 1.26520 1.00681 0.73338 0.72250 0.71289 1.53145 1.28973 1.78135 1.32373 1.93584 1.77717 1.71450 1.56731 1.93588 1.86717 1.33385 1.86310 1.21529 1.02370 0.92531 0.83091 1.22393 0.96290 0.91331 0.98232 0.92809 0.91154 0.92752 0.98079 0.99380 0.93460 0.92875 0.89294 0.91112 0.87196 0.74538 0.74117 0.91660 0.87983 0.91488 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 8.41 71.98 0.61 -4.28 16 2 C 0.10 3.45 2.26 44.92 0.10 3.55 16 3 H 0.07 2.42 7.91 -2.39 -0.02 2.40 16 4 C 0.03 1.68 4.40 29.85 0.13 1.81 16 5 C -0.49 -26.67 8.79 25.60 0.23 -26.45 16 6 H 0.06 3.06 7.75 -2.91 -0.02 3.04 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -56.37 13.29 21.45 0.28 -56.09 16 9 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.53 -17.10 4.23 -870.03 -3.68 -20.78 16 14 C 0.04 0.95 5.31 86.38 0.46 1.40 16 15 C 0.13 2.80 6.53 86.35 0.56 3.37 16 16 N -1.00 -22.98 3.39 -512.18 -1.73 -24.72 16 17 S 2.82 62.25 6.70 -56.49 -0.38 61.87 16 18 N -1.25 -16.00 9.58 37.02 0.35 -15.64 16 19 O -1.01 -27.85 16.92 -128.00 -2.17 -30.01 16 20 O -1.02 -29.70 16.92 -128.00 -2.17 -31.86 16 21 C 0.13 3.49 6.53 86.35 0.56 4.05 16 22 C 0.05 1.39 4.58 86.38 0.40 1.78 16 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.07 1.56 6.97 -2.39 -0.02 1.54 16 25 H 0.05 1.52 6.48 -2.39 -0.02 1.51 16 26 H 0.00 0.05 6.38 -2.39 -0.02 0.03 16 27 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.05 0.99 7.05 -2.38 -0.02 0.98 16 30 H 0.09 2.00 7.96 -2.39 -0.02 1.98 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.11 1.97 7.22 -2.39 -0.02 1.95 16 33 H 0.43 3.80 8.96 -96.75 -0.87 2.93 16 34 H 0.43 3.92 8.96 -96.75 -0.87 3.05 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 2.42 7.22 -2.39 -0.02 2.40 16 37 H 0.07 2.43 6.24 -2.39 -0.01 2.42 16 38 H 0.05 1.30 6.67 -2.39 -0.02 1.28 16 Total: -1.00 -72.70 310.78 -4.60 -77.30 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -0.65 Total: 7.60 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 3.51 Total: -14.46 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -4.77 Total: -117.22 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -4.33 Total: -61.88 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 62.25 SS G_CDS: -0.38 Total: 61.87 kcal Total: -72.70 -4.60 -77.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351474311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.141 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds