Wall clock time and date at job start Mon Mar 30 2020 02:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65602 * 119.99800 * 2 1 4 4 O 1.42103 * 106.40181 * 311.46064 * 3 2 1 5 5 O 1.42091 * 106.40372 * 178.54024 * 3 2 1 6 6 N 1.65603 * 107.21663 * 64.99865 * 3 2 1 7 7 C 1.46494 * 120.00025 * 65.00386 * 6 3 2 8 8 C 1.52996 * 109.47280 * 164.99695 * 7 6 3 9 9 C 1.53349 * 109.42091 * 295.12817 * 8 7 6 10 10 C 1.53196 * 109.15353 * 178.67328 * 9 8 7 11 11 N 1.46928 * 108.89135 * 54.57497 * 10 9 8 12 12 C 1.36936 * 120.63013 * 126.29699 * 11 10 9 13 13 H 1.07999 * 120.00022 * 331.83633 * 12 11 10 14 14 C 1.38813 * 120.00005 * 151.82709 * 12 11 10 15 15 N 1.31618 * 120.00004 * 343.09585 * 14 12 11 16 16 Si 1.86806 * 119.99953 * 163.09475 * 14 12 11 17 17 H 1.48494 * 109.47083 * 60.00061 * 16 14 12 18 18 H 1.48500 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47024 * 300.00112 * 16 14 12 20 20 C 1.46924 * 118.73859 * 306.32337 * 11 10 9 21 21 C 1.53044 * 109.46279 * 174.99967 * 8 7 6 22 22 H 1.09002 * 109.46628 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47154 * 299.99809 * 1 2 3 24 24 H 1.08991 * 109.47291 * 60.00264 * 1 2 3 25 25 H 0.97003 * 120.00349 * 179.97438 * 2 1 3 26 26 H 0.97004 * 119.99617 * 244.99700 * 6 3 2 27 27 H 1.08996 * 109.47191 * 44.99663 * 7 6 3 28 28 H 1.08998 * 109.47122 * 284.99967 * 7 6 3 29 29 H 1.09003 * 109.46065 * 55.02896 * 8 7 6 30 30 H 1.08998 * 109.68701 * 58.70817 * 9 8 7 31 31 H 1.09000 * 109.47234 * 298.50885 * 9 8 7 32 32 H 1.08996 * 109.58345 * 294.72319 * 10 9 8 33 33 H 1.08994 * 109.58644 * 174.43734 * 10 9 8 34 34 H 0.96996 * 119.99787 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.58664 * 173.39523 * 20 11 10 36 36 H 1.08996 * 109.58580 * 293.67452 * 20 11 10 37 37 H 1.08992 * 109.49619 * 61.43154 * 21 8 7 38 38 H 1.08999 * 109.52313 * 301.35168 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2330 -1.0216 5 8 3.6737 1.1004 0.0347 6 7 1.9590 2.1929 1.4336 7 6 2.3997 1.5976 2.6975 8 6 2.3089 2.6416 3.8121 9 6 3.2986 3.7780 3.5282 10 6 3.1791 4.8357 4.6300 11 7 3.3620 4.1859 5.9351 12 6 4.2964 4.6513 6.8213 13 1 5.1804 5.1550 6.4592 14 6 4.1072 4.4759 8.1853 15 7 2.9133 4.1755 8.6508 16 14 5.5471 4.6662 9.3600 17 1 6.0989 6.0403 9.2482 18 1 5.0853 4.4294 10.7514 19 1 6.6017 3.6796 9.0143 20 6 2.5237 3.0269 6.2708 21 6 2.6495 1.9870 5.1530 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 1.9501 -0.8400 0.0004 26 1 1.4717 3.0317 1.4364 27 1 3.4313 1.2594 2.5996 28 1 1.7608 0.7489 2.9416 29 1 1.2966 3.0440 3.8512 30 1 3.0710 4.2308 2.5632 31 1 4.3136 3.3808 3.5139 32 1 2.1930 5.2981 4.5871 33 1 3.9462 5.5973 4.4903 34 1 2.7812 4.0526 9.6038 35 1 2.8600 2.5933 7.2126 36 1 1.4846 3.3424 6.3643 37 1 3.6704 1.6065 5.1231 38 1 1.9599 1.1644 5.3422 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352113437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:25 Heat of formation + Delta-G solvation = -67.582058 kcal Electronic energy + Delta-G solvation = -20359.136708 eV Core-core repulsion = 17170.491396 eV Total energy + Delta-G solvation = -3188.645312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.14883 -37.28427 -35.93383 -35.37280 -35.09083 -32.66021 -30.64772 -29.62821 -26.54544 -26.23059 -23.89385 -22.14559 -21.16067 -20.03498 -19.19113 -18.15713 -17.52259 -16.66635 -16.59856 -15.45698 -14.85074 -14.66838 -14.47645 -13.97612 -13.87603 -13.49890 -13.19030 -13.09706 -12.79671 -12.39030 -12.22193 -12.12616 -12.06580 -11.83824 -11.82407 -11.34423 -10.97813 -10.70304 -10.50944 -10.23279 -10.22867 -9.96172 -9.87348 -9.69532 -9.45459 -9.36505 -8.45673 -6.65449 -5.78222 -3.20285 0.52501 2.79691 3.39335 3.44718 3.46592 3.47811 4.37114 4.50896 4.72833 4.95878 5.12704 5.17347 5.24674 5.39378 5.40761 5.42523 5.57627 5.66516 5.83533 5.92459 6.07868 6.20269 6.33675 6.51935 6.59579 6.62510 6.68442 6.77753 6.84227 6.95095 7.02493 7.37023 7.65500 7.80536 8.46597 9.22900 9.86402 10.43219 11.30367 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.042042 B = 0.003785 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.839360 B = 7396.151169 C = 7582.420665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.133 6.133 3 S 2.793 3.207 4 O -0.985 6.985 5 O -0.979 6.979 6 N -1.122 6.122 7 C 0.122 3.878 8 C -0.083 4.083 9 C -0.129 4.129 10 C 0.144 3.856 11 N -0.592 5.592 12 C -0.252 4.252 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.172 3.828 21 C -0.135 4.135 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.416 0.584 26 H 0.417 0.583 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.052 0.948 34 H 0.254 0.746 35 H 0.087 0.913 36 H 0.017 0.983 37 H 0.058 0.942 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 -9.428 -14.741 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.894 5.894 3 S 2.798 3.202 4 O -0.968 6.968 5 O -0.962 6.962 6 N -0.885 5.885 7 C -0.004 4.004 8 C -0.103 4.103 9 C -0.168 4.168 10 C 0.018 3.982 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.549 5.549 16 Si 0.732 3.268 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.210 1.210 20 C 0.046 3.954 21 C -0.175 4.175 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.248 0.752 26 H 0.251 0.749 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.776 -9.121 -15.261 18.694 hybrid contribution 0.345 -0.120 1.023 1.086 sum -5.431 -9.240 -14.239 17.822 Atomic orbital electron populations 1.21410 0.78717 1.03887 1.01919 1.55724 1.16204 1.25265 1.92190 1.01651 0.73095 0.72638 0.72796 1.93616 1.79194 1.68770 1.55212 1.93635 1.31700 1.83949 1.86956 1.55765 1.73611 1.36383 1.22704 1.21481 0.99660 0.96263 0.82951 1.21303 1.00021 0.95139 0.93873 1.22126 0.98998 0.97190 0.98481 1.20903 0.98065 0.93122 0.86115 1.44039 1.42772 1.30799 1.13917 1.19162 0.97999 1.34448 0.86595 0.91790 1.25030 0.96115 1.01353 0.97108 1.70019 1.19709 1.52365 1.12794 0.86372 0.82238 0.78133 0.80044 1.20909 1.21657 1.21033 1.20752 0.93413 0.85870 0.95409 1.22212 1.00629 0.99145 0.95522 0.90273 0.92072 0.91685 0.75157 0.74860 0.90579 0.92264 0.91234 0.93093 0.92108 0.96631 0.92911 0.93634 0.89473 0.96475 0.92357 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 11.16 59.85 0.67 1.21 16 2 N -1.13 -8.90 6.24 -16.64 -0.10 -9.00 16 3 S 2.79 31.61 6.18 -107.50 -0.66 30.95 16 4 O -0.98 -13.88 17.86 -57.17 -1.02 -14.90 16 5 O -0.98 -14.53 17.61 -57.17 -1.01 -15.53 16 6 N -1.12 -12.02 5.57 -10.62 -0.06 -12.08 16 7 C 0.12 1.47 5.64 -4.05 -0.02 1.45 16 8 C -0.08 -1.26 2.18 -90.42 -0.20 -1.45 16 9 C -0.13 -2.17 5.28 -26.45 -0.14 -2.31 16 10 C 0.14 2.99 6.51 -3.71 -0.02 2.96 16 11 N -0.59 -14.66 2.99 -172.32 -0.52 -15.17 16 12 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 13 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 14 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 15 N -0.90 -25.99 11.20 55.49 0.62 -25.37 16 16 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 21 C -0.14 -2.38 5.36 -26.61 -0.14 -2.52 16 22 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 25 H 0.42 2.58 8.96 -34.47 -0.31 2.27 16 26 H 0.42 4.07 8.37 -34.47 -0.29 3.78 16 27 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.74 7.52 -51.93 -0.39 0.35 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 318.66 15.07 4.80 4.80 Total: -1.00 -34.00 318.66 -8.98 -42.97 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.89 Total: 0.56 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -0.11 Total: -3.82 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.06 Total: -61.63 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -2.03 Total: -30.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 16 Polarization: 31.61 SS G_CDS: -0.66 Total: 30.95 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.00 -8.98 -42.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352113437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.610 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds