Wall clock time and date at job start Mon Mar 30 2020 02:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65602 * 119.99800 * 2 1 4 4 O 1.42103 * 106.40181 * 311.46064 * 3 2 1 5 5 O 1.42091 * 106.40372 * 178.54024 * 3 2 1 6 6 N 1.65603 * 107.21663 * 64.99865 * 3 2 1 7 7 C 1.46494 * 120.00025 * 65.00386 * 6 3 2 8 8 C 1.52996 * 109.47280 * 164.99695 * 7 6 3 9 9 C 1.53349 * 109.42091 * 295.12817 * 8 7 6 10 10 C 1.53196 * 109.15353 * 178.67328 * 9 8 7 11 11 N 1.46928 * 108.89135 * 54.57497 * 10 9 8 12 12 C 1.36936 * 120.63013 * 126.29699 * 11 10 9 13 13 H 1.07999 * 120.00022 * 331.83633 * 12 11 10 14 14 C 1.38813 * 120.00005 * 151.82709 * 12 11 10 15 15 N 1.31618 * 120.00004 * 343.09585 * 14 12 11 16 16 Si 1.86806 * 119.99953 * 163.09475 * 14 12 11 17 17 H 1.48494 * 109.47083 * 60.00061 * 16 14 12 18 18 H 1.48500 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47024 * 300.00112 * 16 14 12 20 20 C 1.46924 * 118.73859 * 306.32337 * 11 10 9 21 21 C 1.53044 * 109.46279 * 174.99967 * 8 7 6 22 22 H 1.09002 * 109.46628 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47154 * 299.99809 * 1 2 3 24 24 H 1.08991 * 109.47291 * 60.00264 * 1 2 3 25 25 H 0.97003 * 120.00349 * 179.97438 * 2 1 3 26 26 H 0.97004 * 119.99617 * 244.99700 * 6 3 2 27 27 H 1.08996 * 109.47191 * 44.99663 * 7 6 3 28 28 H 1.08998 * 109.47122 * 284.99967 * 7 6 3 29 29 H 1.09003 * 109.46065 * 55.02896 * 8 7 6 30 30 H 1.08998 * 109.68701 * 58.70817 * 9 8 7 31 31 H 1.09000 * 109.47234 * 298.50885 * 9 8 7 32 32 H 1.08996 * 109.58345 * 294.72319 * 10 9 8 33 33 H 1.08994 * 109.58644 * 174.43734 * 10 9 8 34 34 H 0.96996 * 119.99787 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.58664 * 173.39523 * 20 11 10 36 36 H 1.08996 * 109.58580 * 293.67452 * 20 11 10 37 37 H 1.08992 * 109.49619 * 61.43154 * 21 8 7 38 38 H 1.08999 * 109.52313 * 301.35168 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2330 -1.0216 5 8 3.6737 1.1004 0.0347 6 7 1.9590 2.1929 1.4336 7 6 2.3997 1.5976 2.6975 8 6 2.3089 2.6416 3.8121 9 6 3.2986 3.7780 3.5282 10 6 3.1791 4.8357 4.6300 11 7 3.3620 4.1859 5.9351 12 6 4.2964 4.6513 6.8213 13 1 5.1804 5.1550 6.4592 14 6 4.1072 4.4759 8.1853 15 7 2.9133 4.1755 8.6508 16 14 5.5471 4.6662 9.3600 17 1 6.0989 6.0403 9.2482 18 1 5.0853 4.4294 10.7514 19 1 6.6017 3.6796 9.0143 20 6 2.5237 3.0269 6.2708 21 6 2.6495 1.9870 5.1530 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 1.9501 -0.8400 0.0004 26 1 1.4717 3.0317 1.4364 27 1 3.4313 1.2594 2.5996 28 1 1.7608 0.7489 2.9416 29 1 1.2966 3.0440 3.8512 30 1 3.0710 4.2308 2.5632 31 1 4.3136 3.3808 3.5139 32 1 2.1930 5.2981 4.5871 33 1 3.9462 5.5973 4.4903 34 1 2.7812 4.0526 9.6038 35 1 2.8600 2.5933 7.2126 36 1 1.4846 3.3424 6.3643 37 1 3.6704 1.6065 5.1231 38 1 1.9599 1.1644 5.3422 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352113437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:24 Heat of formation + Delta-G solvation = -95.005232 kcal Electronic energy + Delta-G solvation = -20360.325866 eV Core-core repulsion = 17170.491396 eV Total energy + Delta-G solvation = -3189.834470 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.58462 -38.30286 -36.94708 -36.66232 -35.79357 -34.30961 -32.30767 -31.29193 -28.07466 -26.78663 -25.53836 -23.73114 -22.66143 -20.99891 -20.57526 -19.11396 -18.64200 -18.28929 -17.48558 -16.82378 -16.20240 -15.74881 -15.71166 -15.32049 -15.26293 -14.79238 -14.60820 -14.22314 -13.85216 -13.75454 -13.57550 -13.24565 -13.19368 -13.14213 -12.98722 -12.74703 -12.52904 -12.48507 -12.27654 -11.98463 -11.80620 -11.51560 -11.14206 -11.09992 -10.54271 -10.50112 -10.39336 -8.64527 -7.86193 -5.31004 -0.34974 1.47141 1.49215 1.56083 1.99205 2.52384 2.63670 3.27955 3.49566 3.74675 3.88089 4.00286 4.08736 4.26094 4.48183 4.57841 4.62267 4.71152 4.73050 4.78444 4.86870 4.98845 5.01749 5.02982 5.13126 5.28558 5.34619 5.36579 5.46322 5.57991 5.68457 5.84075 6.03562 6.21452 6.41458 7.17847 7.90166 8.40512 9.19510 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.042042 B = 0.003785 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.839360 B = 7396.151169 C = 7582.420665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.122 6.122 3 S 2.815 3.185 4 O -1.013 7.013 5 O -1.016 7.016 6 N -1.118 6.118 7 C 0.131 3.869 8 C -0.077 4.077 9 C -0.120 4.120 10 C 0.139 3.861 11 N -0.612 5.612 12 C -0.267 4.267 13 H 0.061 0.939 14 C -0.047 4.047 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.278 1.278 18 H -0.292 1.292 19 H -0.279 1.279 20 C 0.175 3.825 21 C -0.123 4.123 22 H 0.104 0.896 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.425 0.575 26 H 0.423 0.577 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.016 0.984 33 H 0.045 0.955 34 H 0.250 0.750 35 H 0.051 0.949 36 H -0.001 1.001 37 H 0.050 0.950 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 -10.667 -15.892 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.886 5.886 3 S 2.820 3.180 4 O -0.996 6.996 5 O -0.999 6.999 6 N -0.881 5.881 7 C 0.005 3.995 8 C -0.097 4.097 9 C -0.159 4.159 10 C 0.013 3.987 11 N -0.336 5.336 12 C -0.397 4.397 13 H 0.079 0.921 14 C -0.243 4.243 15 N -0.579 5.579 16 Si 0.793 3.207 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.205 1.205 20 C 0.049 3.951 21 C -0.163 4.163 22 H 0.123 0.877 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.261 0.739 26 H 0.259 0.741 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.017 0.983 37 H 0.069 0.931 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.282 -10.359 -16.445 20.426 hybrid contribution 0.445 0.291 1.355 1.456 sum -5.837 -10.068 -15.090 19.056 Atomic orbital electron populations 1.21663 0.77274 1.05733 1.02206 1.55388 1.17016 1.24413 1.91823 1.00769 0.72122 0.72749 0.72332 1.93580 1.79522 1.70108 1.56408 1.93585 1.34370 1.84576 1.87381 1.55583 1.73624 1.36920 1.21953 1.21341 1.00266 0.95921 0.82019 1.21198 0.99735 0.95188 0.93587 1.22012 0.99074 0.96779 0.98048 1.21061 0.97711 0.94208 0.85681 1.44327 1.42615 1.31848 1.14831 1.19468 0.98583 1.34133 0.87511 0.92149 1.25740 0.98329 1.01728 0.98506 1.70166 1.21402 1.53672 1.12665 0.85388 0.79361 0.78190 0.77779 1.20344 1.21794 1.20526 1.20616 0.91735 0.86644 0.96098 1.22009 1.01114 0.98278 0.94899 0.87710 0.91103 0.92213 0.73947 0.74121 0.91270 0.89165 0.90314 0.90406 0.93280 0.96600 0.93661 0.94092 0.93083 0.98337 0.93111 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 11.16 127.77 1.43 2.13 16 2 N -1.12 -14.38 6.24 -206.55 -1.29 -15.67 16 3 S 2.82 57.79 6.18 -56.49 -0.35 57.44 16 4 O -1.01 -26.91 17.86 -128.00 -2.29 -29.20 16 5 O -1.02 -28.56 17.61 -128.00 -2.25 -30.82 16 6 N -1.12 -20.68 5.57 -187.51 -1.04 -21.73 16 7 C 0.13 2.70 5.64 86.38 0.49 3.19 16 8 C -0.08 -2.13 2.18 -10.66 -0.02 -2.16 16 9 C -0.12 -3.86 5.28 30.78 0.16 -3.69 16 10 C 0.14 5.72 6.51 86.36 0.56 6.28 16 11 N -0.61 -30.71 2.99 -699.11 -2.09 -32.81 16 12 C -0.27 -14.87 9.58 84.03 0.81 -14.07 16 13 H 0.06 3.32 7.88 -2.91 -0.02 3.30 16 14 C -0.05 -2.66 4.92 84.86 0.42 -2.25 16 15 N -0.93 -54.94 11.20 21.65 0.24 -54.69 16 16 Si 0.96 45.06 29.59 68.60 2.03 47.09 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 C 0.17 8.14 5.30 86.36 0.46 8.60 16 21 C -0.12 -4.16 5.36 30.67 0.16 -3.99 16 22 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 25 H 0.43 4.02 8.96 -96.74 -0.87 3.15 16 26 H 0.42 6.98 8.37 -96.74 -0.81 6.17 16 27 H 0.07 1.59 7.75 -2.39 -0.02 1.57 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.08 2.08 7.52 -2.39 -0.02 2.06 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.04 1.88 7.93 -2.39 -0.02 1.86 16 34 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.05 2.73 6.06 -2.39 -0.01 2.71 16 36 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -74.42 318.66 -3.20 -77.62 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -0.61 Total: 8.72 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 4.46 Total: -5.96 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -4.18 Total: -124.90 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -4.54 Total: -60.01 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 57.79 SS G_CDS: -0.35 Total: 57.44 kcal Total: -74.42 -3.20 -77.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352113437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.383 kcal (2) G-P(sol) polarization free energy of solvation -74.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds