Wall clock time and date at job start Mon Mar 30 2020 01:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 5 5 C 1.46903 * 110.99807 * 84.99961 * 4 2 1 6 6 C 1.53001 * 109.46980 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47166 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00327 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00339 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99356 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00418 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47072 * 89.99938 * 11 9 7 13 13 H 1.48493 * 109.47248 * 209.99993 * 11 9 7 14 14 H 1.48501 * 109.47034 * 330.00258 * 11 9 7 15 15 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 16 16 C 1.33997 * 124.93211 * 260.00502 * 15 2 1 17 17 C 1.46779 * 106.18991 * 179.97438 * 16 15 2 18 18 C 1.39471 * 134.35008 * 179.97438 * 17 16 15 19 19 C 1.36714 * 119.76610 * 179.97438 * 18 17 16 20 20 C 1.38747 * 120.43398 * 0.04562 * 19 18 17 21 21 C 1.38030 * 120.65704 * 359.97263 * 20 19 18 22 22 F 1.35103 * 120.11441 * 180.02562 * 21 20 19 23 23 C 1.39140 * 119.77549 * 0.02562 * 21 20 19 24 24 O 1.34441 * 124.92465 * 79.69690 * 15 2 1 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.00901 * 110.99898 * 208.95281 * 4 2 1 29 29 H 1.09000 * 109.47514 * 299.99609 * 5 4 2 30 30 H 1.08999 * 109.47620 * 60.00050 * 5 4 2 31 31 H 1.08998 * 109.47159 * 299.99923 * 6 5 4 32 32 H 1.09001 * 109.47307 * 59.99948 * 6 5 4 33 33 H 0.97002 * 119.99189 * 180.02562 * 10 9 7 34 34 H 1.07999 * 126.90783 * 359.96188 * 16 15 2 35 35 H 1.08001 * 120.11892 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.78649 * 180.02562 * 19 18 17 37 37 H 1.08002 * 119.67029 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2228 -2.3469 6 6 2.5963 -0.5326 -3.5742 7 6 2.6601 0.4061 -4.7514 8 1 2.3642 1.4383 -4.6357 9 6 3.0972 -0.0526 -5.9760 10 7 3.4590 -1.3092 -6.1165 11 14 3.1756 1.1107 -7.4354 12 1 4.5109 1.7592 -7.4804 13 1 2.9537 0.3472 -8.6895 14 1 2.1248 2.1507 -7.2965 15 6 2.0324 -0.7104 1.2304 16 6 2.4679 -0.1034 2.3428 17 6 2.8535 -1.1745 3.2693 18 6 3.3715 -1.2042 4.5639 19 6 3.6282 -2.4050 5.1649 20 6 3.3776 -3.5940 4.4950 21 6 2.8655 -3.5852 3.2133 22 9 2.6252 -4.7495 2.5714 23 6 2.5975 -2.3732 2.5845 24 8 2.1031 -2.0453 1.3735 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.9174 -1.1204 -1.0288 29 1 1.0871 0.6165 -2.5525 30 1 2.7589 1.0464 -2.1182 31 1 3.5918 -0.9259 -3.3683 32 1 1.9203 -1.3565 -3.8031 33 1 3.7668 -1.6318 -6.9780 34 1 2.5242 0.9602 2.5216 35 1 3.5684 -0.2818 5.0902 36 1 4.0289 -2.4284 6.1676 37 1 3.5846 -4.5356 4.9817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355727475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:30 Heat of formation + Delta-G solvation = -25.133898 kcal Electronic energy + Delta-G solvation = -20370.300436 eV Core-core repulsion = 17028.131902 eV Total energy + Delta-G solvation = -3342.168534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.03236 -42.63060 -38.15969 -36.73419 -33.54458 -32.65926 -31.29000 -30.33057 -28.94656 -28.07010 -24.69663 -23.38556 -23.12731 -21.63737 -20.69694 -20.52433 -17.98080 -17.59434 -16.63240 -16.47023 -16.24638 -15.75015 -15.31956 -15.16810 -14.79391 -14.43239 -14.04940 -13.57735 -13.36092 -13.11909 -12.85112 -12.34557 -12.31291 -12.18379 -12.10440 -11.80647 -11.54990 -11.37508 -11.06881 -10.91607 -10.55810 -10.16991 -10.02996 -9.44655 -9.17389 -8.86966 -8.36925 -8.30007 -7.99180 -6.00537 -4.03721 0.53905 0.98744 2.09955 2.41732 3.31409 3.31574 3.37748 3.40717 3.88939 4.03881 4.40138 4.46399 4.57057 4.70859 4.88907 4.90452 4.99623 5.27805 5.31306 5.35356 5.41052 5.56328 5.71259 5.76386 5.85623 5.95236 6.06420 6.17350 6.22112 6.27270 6.33610 6.40493 6.90995 6.98067 7.35463 7.66920 7.74070 7.87446 8.05149 8.40307 9.03430 9.60137 11.10839 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028715 B = 0.003209 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.864375 B = 8722.927531 C = 9164.398766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.154 3.846 3 H 0.076 0.924 4 N -0.683 5.683 5 C 0.064 3.936 6 C 0.025 3.975 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.063 3.937 16 C -0.217 4.217 17 C -0.097 4.097 18 C -0.084 4.084 19 C -0.111 4.111 20 C -0.136 4.136 21 C 0.119 3.881 22 F -0.131 7.131 23 C 0.013 3.987 24 O -0.165 6.165 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.343 0.657 29 H 0.063 0.937 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.162 0.838 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 0.317 23.988 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 H 0.094 0.906 4 N -0.316 5.316 5 C -0.063 4.063 6 C -0.012 4.012 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.531 5.531 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.014 3.986 16 C -0.237 4.237 17 C -0.099 4.099 18 C -0.102 4.102 19 C -0.129 4.129 20 C -0.155 4.155 21 C 0.099 3.901 22 F -0.109 7.109 23 C -0.036 4.036 24 O -0.065 6.065 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.180 0.820 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.084 -0.303 23.441 23.535 hybrid contribution 0.907 0.952 -0.681 1.481 sum -1.176 0.648 22.760 22.799 Atomic orbital electron populations 1.21841 0.92759 1.03253 1.01897 1.20388 0.96806 0.94277 0.84071 0.90627 1.60731 1.33973 1.33816 1.03033 1.22284 0.99959 0.93445 0.90630 1.19068 0.96346 0.95883 0.89937 1.21149 1.44160 0.96324 0.94545 0.92703 1.25013 0.95381 0.95105 0.98881 1.69982 1.44193 1.14368 1.24553 0.86575 0.78339 0.80837 0.82124 1.20704 1.21176 1.19863 1.22823 0.98156 0.79971 0.97649 1.22221 1.08982 0.99514 0.92990 1.19810 1.02579 0.91786 0.95687 1.20331 0.98484 0.98819 0.92609 1.20587 1.00880 0.90970 1.00437 1.20904 1.01941 1.00595 0.92073 1.16554 1.04354 0.77718 0.91475 1.91543 1.92274 1.45736 1.81384 1.19626 1.03145 0.94678 0.86138 1.84146 1.67572 1.23923 1.30848 0.91462 0.92516 0.90986 0.83889 0.91845 0.96278 0.96760 0.95479 0.92942 0.82009 0.84889 0.84416 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.40 37.16 0.35 -1.48 16 2 C 0.15 2.21 3.05 -68.86 -0.21 2.00 16 3 H 0.08 0.98 7.78 -51.93 -0.40 0.58 16 4 N -0.68 -12.33 6.29 -107.95 -0.68 -13.01 16 5 C 0.06 1.32 5.42 -3.82 -0.02 1.30 16 6 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 11 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.06 0.89 5.73 -35.80 -0.21 0.68 16 16 C -0.22 -2.61 10.99 -37.62 -0.41 -3.03 16 17 C -0.10 -1.20 6.40 -105.17 -0.67 -1.87 16 18 C -0.08 -0.78 10.05 -39.67 -0.40 -1.18 16 19 C -0.11 -0.88 9.98 -39.94 -0.40 -1.28 16 20 C -0.14 -1.28 9.99 -39.47 -0.39 -1.67 16 21 C 0.12 1.53 7.32 -39.32 -0.29 1.24 16 22 F -0.13 -1.86 17.27 2.25 0.04 -1.82 16 23 C 0.01 0.18 7.40 -38.43 -0.28 -0.10 16 24 O -0.16 -2.67 10.56 3.81 0.04 -2.63 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.95 7.45 -51.93 -0.39 0.57 16 28 H 0.34 6.30 8.35 -39.29 -0.33 5.98 16 29 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 30 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -31.68 323.71 -8.35 -40.03 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.85 Total: 0.66 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -3.49 Total: -18.40 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.06 Total: -39.35 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.68 -8.35 -40.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355727475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.894 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds