Wall clock time and date at job start Mon Mar 30 2020 01:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 5 5 C 1.46903 * 110.99807 * 84.99961 * 4 2 1 6 6 C 1.53001 * 109.46980 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47166 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00327 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00339 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99356 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00418 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47072 * 89.99938 * 11 9 7 13 13 H 1.48493 * 109.47248 * 209.99993 * 11 9 7 14 14 H 1.48501 * 109.47034 * 330.00258 * 11 9 7 15 15 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 16 16 C 1.33997 * 124.93211 * 260.00502 * 15 2 1 17 17 C 1.46779 * 106.18991 * 179.97438 * 16 15 2 18 18 C 1.39471 * 134.35008 * 179.97438 * 17 16 15 19 19 C 1.36714 * 119.76610 * 179.97438 * 18 17 16 20 20 C 1.38747 * 120.43398 * 0.04562 * 19 18 17 21 21 C 1.38030 * 120.65704 * 359.97263 * 20 19 18 22 22 F 1.35103 * 120.11441 * 180.02562 * 21 20 19 23 23 C 1.39140 * 119.77549 * 0.02562 * 21 20 19 24 24 O 1.34441 * 124.92465 * 79.69690 * 15 2 1 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.00901 * 110.99898 * 208.95281 * 4 2 1 29 29 H 1.09000 * 109.47514 * 299.99609 * 5 4 2 30 30 H 1.08999 * 109.47620 * 60.00050 * 5 4 2 31 31 H 1.08998 * 109.47159 * 299.99923 * 6 5 4 32 32 H 1.09001 * 109.47307 * 59.99948 * 6 5 4 33 33 H 0.97002 * 119.99189 * 180.02562 * 10 9 7 34 34 H 1.07999 * 126.90783 * 359.96188 * 16 15 2 35 35 H 1.08001 * 120.11892 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.78649 * 180.02562 * 19 18 17 37 37 H 1.08002 * 119.67029 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2228 -2.3469 6 6 2.5963 -0.5326 -3.5742 7 6 2.6601 0.4061 -4.7514 8 1 2.3642 1.4383 -4.6357 9 6 3.0972 -0.0526 -5.9760 10 7 3.4590 -1.3092 -6.1165 11 14 3.1756 1.1107 -7.4354 12 1 4.5109 1.7592 -7.4804 13 1 2.9537 0.3472 -8.6895 14 1 2.1248 2.1507 -7.2965 15 6 2.0324 -0.7104 1.2304 16 6 2.4679 -0.1034 2.3428 17 6 2.8535 -1.1745 3.2693 18 6 3.3715 -1.2042 4.5639 19 6 3.6282 -2.4050 5.1649 20 6 3.3776 -3.5940 4.4950 21 6 2.8655 -3.5852 3.2133 22 9 2.6252 -4.7495 2.5714 23 6 2.5975 -2.3732 2.5845 24 8 2.1031 -2.0453 1.3735 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.9174 -1.1204 -1.0288 29 1 1.0871 0.6165 -2.5525 30 1 2.7589 1.0464 -2.1182 31 1 3.5918 -0.9259 -3.3683 32 1 1.9203 -1.3565 -3.8031 33 1 3.7668 -1.6318 -6.9780 34 1 2.5242 0.9602 2.5216 35 1 3.5684 -0.2818 5.0902 36 1 4.0289 -2.4284 6.1676 37 1 3.5846 -4.5356 4.9817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355727475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:30 Heat of formation + Delta-G solvation = -44.807129 kcal Electronic energy + Delta-G solvation = -20371.153531 eV Core-core repulsion = 17028.131902 eV Total energy + Delta-G solvation = -3343.021630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.01400 -43.58177 -39.02402 -38.05776 -35.42049 -33.88857 -32.74309 -31.15111 -30.21513 -29.45156 -26.38738 -24.62690 -24.02756 -22.74583 -22.19061 -21.73852 -18.92041 -18.68384 -18.34059 -17.62311 -17.47025 -16.74100 -16.48509 -16.34315 -16.05397 -15.98836 -15.43609 -14.63059 -14.53130 -14.26860 -14.10624 -13.99565 -13.60217 -13.09786 -13.05443 -12.91826 -12.88531 -12.80245 -12.54267 -12.44120 -12.32658 -11.88869 -11.45946 -11.29437 -11.02850 -10.58164 -9.74721 -9.43098 -9.16813 -8.21190 -6.33482 -0.29956 0.16301 1.17048 1.40236 1.42301 1.50920 1.53494 2.39791 2.53671 3.01914 3.04417 3.12446 3.31071 3.72729 3.87724 3.98661 4.07702 4.19234 4.23635 4.36597 4.49185 4.55327 4.61254 4.68816 4.80131 4.87619 5.00815 5.02864 5.10067 5.27716 5.31617 5.35537 5.42644 5.61233 5.62757 5.76013 6.00342 6.08901 6.22448 6.36015 6.84256 7.36250 8.91282 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028715 B = 0.003209 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.864375 B = 8722.927531 C = 9164.398766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.157 3.843 3 H 0.097 0.903 4 N -0.697 5.697 5 C 0.085 3.915 6 C 0.030 3.970 7 C -0.543 4.543 8 H 0.066 0.934 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.970 3.030 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.259 1.259 15 C 0.029 3.971 16 C -0.195 4.195 17 C -0.115 4.115 18 C -0.075 4.075 19 C -0.101 4.101 20 C -0.118 4.118 21 C 0.076 3.924 22 F -0.151 7.151 23 C -0.021 4.021 24 O -0.202 6.202 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.337 0.663 29 H 0.070 0.930 30 H 0.030 0.970 31 H -0.014 1.014 32 H -0.009 1.009 33 H 0.263 0.737 34 H 0.194 0.806 35 H 0.168 0.832 36 H 0.183 0.817 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 2.697 26.516 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.048 3.952 3 H 0.115 0.885 4 N -0.328 5.328 5 C -0.044 4.044 6 C -0.007 4.007 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.201 4.201 10 N -0.575 5.575 11 Si 0.794 3.206 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.183 1.183 15 C -0.019 4.019 16 C -0.214 4.214 17 C -0.116 4.116 18 C -0.093 4.093 19 C -0.118 4.118 20 C -0.137 4.137 21 C 0.056 3.944 22 F -0.130 7.130 23 C -0.069 4.069 24 O -0.104 6.104 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.005 0.995 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.211 0.789 35 H 0.186 0.814 36 H 0.200 0.800 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.615 2.092 25.996 26.130 hybrid contribution 0.800 0.135 -1.281 1.517 sum -0.815 2.226 24.714 24.828 Atomic orbital electron populations 1.21823 0.92043 1.02315 1.03120 1.20449 0.97305 0.94882 0.82595 0.88515 1.60616 1.33746 1.34155 1.04323 1.21891 1.00025 0.93037 0.89411 1.18927 0.94150 0.95176 0.92492 1.21614 1.43955 0.97094 0.95437 0.91547 1.26050 0.94768 0.96866 1.02389 1.70138 1.45195 1.16639 1.25496 0.85367 0.78974 0.78553 0.77659 1.19673 1.20945 1.18347 1.22809 1.00857 0.79694 0.98493 1.22613 1.06256 1.00811 0.91768 1.20153 1.03631 0.90767 0.97047 1.20838 0.96396 1.00894 0.91178 1.21145 0.99151 0.89668 1.01878 1.21397 0.99188 1.02773 0.90327 1.17135 1.07151 0.76967 0.93116 1.91479 1.92798 1.46619 1.82055 1.20152 1.04367 0.96285 0.86142 1.84068 1.68794 1.25183 1.32350 0.93488 0.89619 0.91303 0.84571 0.91187 0.95196 0.99528 0.99073 0.92792 0.78877 0.81427 0.79967 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.40 71.98 0.68 -2.83 16 2 C 0.16 4.47 3.05 44.17 0.13 4.61 16 3 H 0.10 2.35 7.78 -2.39 -0.02 2.33 16 4 N -0.70 -26.17 6.29 -495.43 -3.11 -29.28 16 5 C 0.08 3.54 5.42 86.30 0.47 4.01 16 6 C 0.03 1.64 5.23 29.85 0.16 1.80 16 7 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 10 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 11 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 15 C 0.03 0.83 5.73 24.72 0.14 0.98 16 16 C -0.20 -4.37 10.99 23.54 0.26 -4.11 16 17 C -0.11 -2.64 6.40 -20.22 -0.13 -2.77 16 18 C -0.08 -1.10 10.05 22.21 0.22 -0.88 16 19 C -0.10 -1.18 9.98 22.03 0.22 -0.96 16 20 C -0.12 -1.96 9.99 22.34 0.22 -1.73 16 21 C 0.08 2.00 7.32 22.44 0.16 2.16 16 22 F -0.15 -4.59 17.27 44.97 0.78 -3.82 16 23 C -0.02 -0.64 7.40 23.02 0.17 -0.47 16 24 O -0.20 -6.96 10.56 -9.29 -0.10 -7.05 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.80 7.45 -2.39 -0.02 1.78 16 28 H 0.34 13.21 8.35 -89.69 -0.75 12.46 16 29 H 0.07 2.82 7.44 -2.39 -0.02 2.81 16 30 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 31 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 37 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.33 323.71 3.61 -69.72 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.33 Total: 12.88 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 3.40 Total: -30.87 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.83 Total: -87.45 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.10 Total: -7.05 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.78 Total: -3.82 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.33 3.61 -69.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355727475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.912 kcal (2) G-P(sol) polarization free energy of solvation -73.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds