Wall clock time and date at job start Mon Mar 30 2020 01:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47113 * 2 1 4 4 N 1.46902 * 109.46871 * 120.00339 * 2 1 3 5 5 C 1.46900 * 110.99439 * 274.99544 * 4 2 1 6 6 C 1.53006 * 109.46703 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47028 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00223 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99927 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00306 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47286 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46958 * 119.99883 * 11 9 7 14 14 H 1.48502 * 109.47304 * 239.99684 * 11 9 7 15 15 C 1.50699 * 109.47137 * 240.00088 * 2 1 3 16 16 C 1.34008 * 124.93068 * 99.99588 * 15 2 1 17 17 C 1.46778 * 106.19195 * 180.02562 * 16 15 2 18 18 C 1.39469 * 134.35126 * 180.02562 * 17 16 15 19 19 C 1.36714 * 119.76123 * 179.97438 * 18 17 16 20 20 C 1.38740 * 120.44102 * 0.02562 * 19 18 17 21 21 C 1.38045 * 120.65278 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.11240 * 179.97438 * 21 20 19 23 23 C 1.39136 * 119.77270 * 0.02562 * 21 20 19 24 24 O 1.34441 * 124.92886 * 280.02764 * 15 2 1 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47008 * 299.99524 * 1 2 3 27 27 H 1.09000 * 109.47215 * 60.00050 * 1 2 3 28 28 H 1.00902 * 110.99497 * 151.05280 * 4 2 1 29 29 H 1.08994 * 109.47725 * 300.00081 * 5 4 2 30 30 H 1.09002 * 109.46978 * 60.00526 * 5 4 2 31 31 H 1.08989 * 109.47429 * 300.00549 * 6 5 4 32 32 H 1.09002 * 109.47072 * 60.00464 * 6 5 4 33 33 H 0.96996 * 120.00511 * 180.02562 * 10 9 7 34 34 H 1.08000 * 126.90035 * 0.04712 * 16 15 2 35 35 H 1.07994 * 120.11774 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.77991 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.67851 * 180.27314 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5962 -0.5330 3.5741 7 6 2.6601 0.4056 4.7514 8 1 2.3643 1.4379 4.6357 9 6 3.0971 -0.0531 5.9760 10 7 3.4578 -1.3100 6.1167 11 14 3.1770 1.1105 7.4351 12 1 2.7197 2.4602 7.0175 13 1 2.2986 0.6045 8.5203 14 1 4.5756 1.1915 7.9276 15 6 2.0324 -0.7104 -1.2305 16 6 2.4680 -0.1033 -2.3429 17 6 2.8535 -1.1743 -3.2695 18 6 3.3715 -1.2039 -4.5641 19 6 3.6292 -2.4048 -5.1646 20 6 3.3783 -3.5937 -4.4950 21 6 2.8657 -3.5850 -3.2133 22 9 2.6250 -4.7493 -2.5716 23 6 2.5968 -2.3731 -2.5850 24 8 2.1080 -2.0452 -1.3717 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.9174 -1.1205 1.0287 29 1 2.7589 1.0461 2.1182 30 1 1.0871 0.6163 2.5525 31 1 1.9203 -1.3568 3.8029 32 1 3.5917 -0.9264 3.3682 33 1 3.7649 -1.6329 6.9783 34 1 2.5243 0.9604 -2.5215 35 1 3.5684 -0.2816 -5.0902 36 1 4.0307 -2.4281 -6.1670 37 1 3.5905 -4.5354 -4.9795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355727479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:32 Heat of formation + Delta-G solvation = -25.169187 kcal Electronic energy + Delta-G solvation = -20370.590912 eV Core-core repulsion = 17028.420847 eV Total energy + Delta-G solvation = -3342.170065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.03385 -42.63045 -38.15973 -36.73457 -33.54575 -32.65972 -31.29024 -30.33085 -28.94643 -28.07082 -24.69820 -23.38613 -23.12734 -21.63779 -20.69688 -20.52549 -17.98080 -17.59439 -16.63391 -16.47014 -16.24902 -15.75105 -15.32068 -15.16843 -14.79339 -14.42933 -14.05092 -13.57791 -13.35988 -13.11830 -12.85233 -12.34587 -12.31509 -12.18672 -12.10413 -11.80755 -11.55080 -11.37302 -11.07702 -10.91667 -10.54662 -10.16936 -10.03580 -9.45014 -9.15911 -8.86973 -8.37393 -8.29943 -7.99238 -6.00699 -4.03868 0.53866 0.98760 2.09933 2.41738 3.30592 3.31574 3.37955 3.41518 3.88946 4.03883 4.40099 4.46390 4.57030 4.70843 4.88890 4.90465 4.99642 5.27815 5.31254 5.35275 5.41072 5.56325 5.71253 5.76354 5.85616 5.95215 6.06424 6.17353 6.22069 6.27258 6.33600 6.40479 6.90934 6.98036 7.35456 7.66936 7.74149 7.87378 8.05041 8.40244 9.03533 9.60113 11.10713 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028713 B = 0.003209 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.917576 B = 8722.297418 C = 9163.784981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.154 3.846 3 H 0.076 0.924 4 N -0.683 5.683 5 C 0.064 3.936 6 C 0.025 3.975 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.063 3.937 16 C -0.218 4.218 17 C -0.097 4.097 18 C -0.084 4.084 19 C -0.111 4.111 20 C -0.136 4.136 21 C 0.119 3.881 22 F -0.131 7.131 23 C 0.013 3.987 24 O -0.165 6.165 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.343 0.657 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.162 0.838 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 0.329 -24.002 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 H 0.094 0.906 4 N -0.315 5.315 5 C -0.063 4.063 6 C -0.013 4.013 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.531 5.531 11 Si 0.721 3.279 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.014 3.986 16 C -0.237 4.237 17 C -0.099 4.099 18 C -0.102 4.102 19 C -0.129 4.129 20 C -0.155 4.155 21 C 0.099 3.901 22 F -0.109 7.109 23 C -0.036 4.036 24 O -0.065 6.065 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.161 0.839 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.180 0.820 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.074 -0.286 -23.456 23.550 hybrid contribution 0.901 0.937 0.689 1.471 sum -1.174 0.651 -22.768 22.807 Atomic orbital electron populations 1.21842 0.92756 1.03253 1.01897 1.20388 0.96808 0.94278 0.84071 0.90626 1.60736 1.33969 1.33812 1.03032 1.22284 0.99959 0.93447 0.90630 1.19074 0.96353 0.95891 0.89954 1.21185 1.44034 0.96355 0.94523 0.92649 1.25012 0.95381 0.95109 0.98895 1.69984 1.44326 1.14364 1.24422 0.86524 0.77637 0.81078 0.82675 1.19756 1.20959 1.21031 1.22827 0.98136 0.79973 0.97666 1.22224 1.08935 0.99513 0.93039 1.19809 1.02562 0.91783 0.95703 1.20329 0.98489 0.98818 0.92606 1.20586 1.00870 0.90970 1.00447 1.20906 1.01933 1.00593 0.92082 1.16556 1.04352 0.77720 0.91476 1.91541 1.92262 1.45734 1.81397 1.19624 1.03213 0.94678 0.86074 1.84146 1.67817 1.23929 1.30594 0.91463 0.90985 0.92514 0.83890 0.96274 0.91846 0.95477 0.96753 0.92994 0.82009 0.84888 0.84416 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.40 37.16 0.35 -1.48 16 2 C 0.15 2.21 3.05 -68.86 -0.21 2.00 16 3 H 0.08 0.98 7.78 -51.93 -0.40 0.58 16 4 N -0.68 -12.33 6.28 -107.95 -0.68 -13.01 16 5 C 0.06 1.32 5.42 -3.82 -0.02 1.30 16 6 C 0.02 0.64 5.23 -27.88 -0.15 0.50 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 11 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.06 0.89 5.73 -35.80 -0.21 0.68 16 16 C -0.22 -2.62 10.99 -37.62 -0.41 -3.03 16 17 C -0.10 -1.19 6.40 -105.17 -0.67 -1.87 16 18 C -0.08 -0.78 10.05 -39.67 -0.40 -1.18 16 19 C -0.11 -0.88 9.98 -39.95 -0.40 -1.28 16 20 C -0.14 -1.28 9.99 -39.47 -0.39 -1.67 16 21 C 0.12 1.53 7.32 -39.32 -0.29 1.24 16 22 F -0.13 -1.86 17.27 2.25 0.04 -1.82 16 23 C 0.01 0.18 7.40 -38.43 -0.28 -0.10 16 24 O -0.16 -2.67 10.56 3.81 0.04 -2.63 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.95 7.45 -51.93 -0.39 0.57 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.34 6.30 8.35 -39.29 -0.33 5.98 16 29 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 30 H 0.06 1.27 7.44 -51.93 -0.39 0.89 16 31 H 0.03 0.77 8.14 -51.94 -0.42 0.34 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -31.70 323.70 -8.35 -40.04 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.85 Total: 0.62 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -3.49 Total: -18.39 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.06 Total: -39.34 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.70 -8.35 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355727479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.874 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds