Wall clock time and date at job start Mon Mar 30 2020 01:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47113 * 2 1 4 4 N 1.46902 * 109.46871 * 120.00339 * 2 1 3 5 5 C 1.46900 * 110.99439 * 274.99544 * 4 2 1 6 6 C 1.53006 * 109.46703 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47028 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00223 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99927 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00306 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47286 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46958 * 119.99883 * 11 9 7 14 14 H 1.48502 * 109.47304 * 239.99684 * 11 9 7 15 15 C 1.50699 * 109.47137 * 240.00088 * 2 1 3 16 16 C 1.34008 * 124.93068 * 99.99588 * 15 2 1 17 17 C 1.46778 * 106.19195 * 180.02562 * 16 15 2 18 18 C 1.39469 * 134.35126 * 180.02562 * 17 16 15 19 19 C 1.36714 * 119.76123 * 179.97438 * 18 17 16 20 20 C 1.38740 * 120.44102 * 0.02562 * 19 18 17 21 21 C 1.38045 * 120.65278 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.11240 * 179.97438 * 21 20 19 23 23 C 1.39136 * 119.77270 * 0.02562 * 21 20 19 24 24 O 1.34441 * 124.92886 * 280.02764 * 15 2 1 25 25 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47008 * 299.99524 * 1 2 3 27 27 H 1.09000 * 109.47215 * 60.00050 * 1 2 3 28 28 H 1.00902 * 110.99497 * 151.05280 * 4 2 1 29 29 H 1.08994 * 109.47725 * 300.00081 * 5 4 2 30 30 H 1.09002 * 109.46978 * 60.00526 * 5 4 2 31 31 H 1.08989 * 109.47429 * 300.00549 * 6 5 4 32 32 H 1.09002 * 109.47072 * 60.00464 * 6 5 4 33 33 H 0.96996 * 120.00511 * 180.02562 * 10 9 7 34 34 H 1.08000 * 126.90035 * 0.04712 * 16 15 2 35 35 H 1.07994 * 120.11774 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.77991 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.67851 * 180.27314 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2226 2.3468 6 6 2.5962 -0.5330 3.5741 7 6 2.6601 0.4056 4.7514 8 1 2.3643 1.4379 4.6357 9 6 3.0971 -0.0531 5.9760 10 7 3.4578 -1.3100 6.1167 11 14 3.1770 1.1105 7.4351 12 1 2.7197 2.4602 7.0175 13 1 2.2986 0.6045 8.5203 14 1 4.5756 1.1915 7.9276 15 6 2.0324 -0.7104 -1.2305 16 6 2.4680 -0.1033 -2.3429 17 6 2.8535 -1.1743 -3.2695 18 6 3.3715 -1.2039 -4.5641 19 6 3.6292 -2.4048 -5.1646 20 6 3.3783 -3.5937 -4.4950 21 6 2.8657 -3.5850 -3.2133 22 9 2.6250 -4.7493 -2.5716 23 6 2.5968 -2.3731 -2.5850 24 8 2.1080 -2.0452 -1.3717 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.9174 -1.1205 1.0287 29 1 2.7589 1.0461 2.1182 30 1 1.0871 0.6163 2.5525 31 1 1.9203 -1.3568 3.8029 32 1 3.5917 -0.9264 3.3682 33 1 3.7649 -1.6329 6.9783 34 1 2.5243 0.9604 -2.5215 35 1 3.5684 -0.2816 -5.0902 36 1 4.0307 -2.4281 -6.1670 37 1 3.5905 -4.5354 -4.9795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355727479.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:32 Heat of formation + Delta-G solvation = -44.851377 kcal Electronic energy + Delta-G solvation = -20371.444396 eV Core-core repulsion = 17028.420847 eV Total energy + Delta-G solvation = -3343.023548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.01534 -43.58150 -39.02398 -38.05784 -35.42189 -33.88860 -32.74275 -31.15126 -30.21491 -29.45173 -26.38900 -24.62760 -24.02696 -22.74634 -22.19086 -21.73816 -18.92033 -18.68544 -18.34264 -17.62396 -17.47041 -16.74186 -16.48231 -16.34278 -16.05451 -15.98835 -15.43738 -14.63013 -14.53352 -14.26850 -14.11067 -13.99519 -13.60193 -13.09857 -13.04300 -12.93778 -12.88578 -12.80437 -12.54787 -12.44119 -12.30771 -11.89648 -11.46035 -11.27553 -11.02772 -10.59060 -9.74729 -9.43135 -9.16734 -8.21305 -6.33555 -0.29980 0.16329 1.17046 1.40297 1.41122 1.50938 1.54476 2.39686 2.53686 3.01932 3.04435 3.12399 3.31098 3.72745 3.87699 3.98679 4.07760 4.19228 4.23652 4.36633 4.49187 4.55362 4.61270 4.68823 4.80149 4.87655 5.00829 5.02861 5.10086 5.27739 5.31642 5.35554 5.42810 5.61251 5.62748 5.76055 6.00326 6.08892 6.22460 6.36025 6.84384 7.36257 8.91367 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028713 B = 0.003209 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.917576 B = 8722.297418 C = 9163.784981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.157 3.843 3 H 0.097 0.903 4 N -0.697 5.697 5 C 0.085 3.915 6 C 0.030 3.970 7 C -0.541 4.541 8 H 0.066 0.934 9 C -0.003 4.003 10 N -0.935 5.935 11 Si 0.970 3.030 12 H -0.257 1.257 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.029 3.971 16 C -0.195 4.195 17 C -0.115 4.115 18 C -0.075 4.075 19 C -0.101 4.101 20 C -0.118 4.118 21 C 0.076 3.924 22 F -0.151 7.151 23 C -0.022 4.022 24 O -0.202 6.202 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.337 0.663 29 H 0.030 0.970 30 H 0.070 0.930 31 H -0.009 1.009 32 H -0.014 1.014 33 H 0.263 0.737 34 H 0.194 0.806 35 H 0.168 0.832 36 H 0.183 0.817 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 2.698 -26.529 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.048 3.952 3 H 0.115 0.885 4 N -0.328 5.328 5 C -0.044 4.044 6 C -0.008 4.008 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.201 4.201 10 N -0.575 5.575 11 Si 0.795 3.205 12 H -0.181 1.181 13 H -0.205 1.205 14 H -0.204 1.204 15 C -0.019 4.019 16 C -0.215 4.215 17 C -0.116 4.116 18 C -0.093 4.093 19 C -0.118 4.118 20 C -0.137 4.137 21 C 0.056 3.944 22 F -0.129 7.129 23 C -0.069 4.069 24 O -0.104 6.104 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.154 0.846 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.009 0.991 32 H 0.005 0.995 33 H 0.072 0.928 34 H 0.211 0.789 35 H 0.186 0.814 36 H 0.200 0.800 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.606 2.098 -26.011 26.144 hybrid contribution 0.793 0.123 1.290 1.520 sum -0.812 2.221 -24.720 24.833 Atomic orbital electron populations 1.21824 0.92037 1.02316 1.03122 1.20450 0.97309 0.94879 0.82595 0.88518 1.60621 1.33742 1.34150 1.04322 1.21891 1.00027 0.93035 0.89413 1.18932 0.94160 0.95183 0.92503 1.21638 1.43830 0.97089 0.95416 0.91556 1.26045 0.94778 0.96872 1.02393 1.70136 1.45310 1.16625 1.25412 0.85319 0.77803 0.79118 0.78301 1.18114 1.20502 1.20435 1.22813 1.00836 0.79694 0.98509 1.22616 1.06211 1.00810 0.91818 1.20152 1.03613 0.90765 0.97064 1.20836 0.96399 1.00893 0.91176 1.21143 0.99144 0.89669 1.01886 1.21400 0.99184 1.02770 0.90330 1.17137 1.07148 0.76969 0.93118 1.91477 1.92787 1.46617 1.82068 1.20151 1.04438 0.96284 0.86074 1.84068 1.69038 1.25190 1.32099 0.93488 0.91299 0.89616 0.84573 0.95205 0.91180 0.99065 0.99515 0.92792 0.78879 0.81427 0.79968 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.40 71.98 0.68 -2.83 16 2 C 0.16 4.47 3.05 44.17 0.13 4.61 16 3 H 0.10 2.34 7.78 -2.39 -0.02 2.33 16 4 N -0.70 -26.16 6.28 -495.43 -3.11 -29.27 16 5 C 0.08 3.54 5.42 86.31 0.47 4.00 16 6 C 0.03 1.62 5.23 29.85 0.16 1.78 16 7 C -0.54 -31.11 9.11 25.60 0.23 -30.87 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 10 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 11 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 12 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 C 0.03 0.83 5.73 24.72 0.14 0.98 16 16 C -0.20 -4.37 10.99 23.54 0.26 -4.11 16 17 C -0.11 -2.64 6.40 -20.22 -0.13 -2.77 16 18 C -0.08 -1.10 10.05 22.21 0.22 -0.88 16 19 C -0.10 -1.18 9.98 22.03 0.22 -0.96 16 20 C -0.12 -1.96 9.99 22.34 0.22 -1.73 16 21 C 0.08 2.00 7.32 22.44 0.16 2.16 16 22 F -0.15 -4.59 17.27 44.97 0.78 -3.81 16 23 C -0.02 -0.64 7.40 23.01 0.17 -0.47 16 24 O -0.20 -6.96 10.56 -9.27 -0.10 -7.05 16 25 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.07 1.80 7.45 -2.39 -0.02 1.78 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 28 H 0.34 13.21 8.35 -89.69 -0.75 12.46 16 29 H 0.03 1.18 8.05 -2.39 -0.02 1.16 16 30 H 0.07 2.82 7.44 -2.39 -0.02 2.81 16 31 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 37 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.34 323.70 3.61 -69.72 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.33 Total: 12.76 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 3.40 Total: -30.81 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -2.83 Total: -87.41 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.10 Total: -7.05 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.78 Total: -3.81 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -73.34 3.61 -69.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355727479.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.872 kcal (2) G-P(sol) polarization free energy of solvation -73.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds