Wall clock time and date at job start Mon Mar 30 2020 02:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.29017 * 126.44326 * 2 1 4 4 N 1.28736 * 108.81624 * 179.97438 * 3 2 1 5 5 N 1.28842 * 109.39370 * 359.76641 * 4 3 2 6 6 C 1.31079 * 107.99030 * 0.37629 * 5 4 3 7 7 C 1.50697 * 126.65916 * 179.89670 * 6 5 4 8 8 N 1.46898 * 109.47266 * 269.68639 * 7 6 5 9 9 C 1.46902 * 110.99943 * 300.28324 * 8 7 6 10 10 C 1.50707 * 109.46834 * 158.42979 * 9 8 7 11 11 H 1.07993 * 120.00153 * 1.97573 * 10 9 8 12 12 C 1.37877 * 119.99467 * 181.97817 * 10 9 8 13 13 N 1.31513 * 120.00622 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99772 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47077 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47180 * 120.00034 * 14 12 10 17 17 H 1.48503 * 109.47422 * 239.99863 * 14 12 10 18 18 C 1.46892 * 111.00165 * 176.32813 * 8 7 6 19 19 C 1.50702 * 109.47469 * 189.99782 * 18 8 7 20 20 C 1.34515 * 125.78754 * 89.99605 * 19 18 8 21 21 C 1.41378 * 106.84176 * 179.97438 * 20 19 18 22 22 C 1.34515 * 106.84293 * 0.02562 * 21 20 19 23 23 O 1.34299 * 108.41620 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47478 * 270.02512 * 1 2 3 25 25 H 1.09001 * 109.47106 * 30.02601 * 1 2 3 26 26 H 1.09003 * 109.46958 * 150.02340 * 1 2 3 27 27 H 1.08994 * 109.47183 * 149.68898 * 7 6 5 28 28 H 1.09001 * 109.47283 * 29.68489 * 7 6 5 29 29 H 1.08989 * 109.47226 * 278.43118 * 9 8 7 30 30 H 1.09004 * 109.46706 * 38.43604 * 9 8 7 31 31 H 0.96998 * 120.00674 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.47001 * 70.00183 * 18 8 7 33 33 H 1.08999 * 109.47814 * 310.00203 * 18 8 7 34 34 H 1.07997 * 126.58025 * 0.02562 * 20 19 18 35 35 H 1.08003 * 126.58311 * 180.02562 * 21 20 19 36 36 H 1.08002 * 125.78999 * 180.26102 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2313 1.0379 0.0000 4 7 3.4582 0.6480 0.0005 5 7 3.4980 -0.6398 0.0059 6 6 2.2644 -1.0829 0.0006 7 6 1.8262 -2.5248 0.0016 8 7 1.6837 -2.9942 -1.3830 9 6 0.6889 -2.1944 -2.1103 10 6 0.9306 -2.3192 -3.5926 11 1 1.7217 -2.9565 -3.9590 12 6 0.1415 -1.6196 -4.4809 13 7 -0.8215 -0.8431 -4.0347 14 14 0.4414 -1.7737 -6.3182 15 1 1.5762 -2.7009 -6.5585 16 1 -0.7797 -2.3039 -6.9763 17 1 0.7665 -0.4382 -6.8804 18 6 1.3416 -4.4222 -1.4222 19 6 1.4440 -4.9247 -2.8392 20 6 2.5452 -5.4425 -3.4125 21 6 2.1952 -5.7815 -4.7397 22 6 0.9012 -5.4501 -4.8983 23 8 0.4514 -4.9318 -3.7439 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 0.8692 -2.6133 0.5156 28 1 2.5722 -3.1308 0.5157 29 1 -0.3115 -2.5562 -1.8735 30 1 0.7768 -1.1490 -1.8145 31 1 -1.3769 -0.3512 -4.6596 32 1 0.3230 -4.5618 -1.0600 33 1 2.0320 -4.9788 -0.7885 34 1 3.5111 -5.5748 -2.9479 35 1 2.8426 -6.2221 -5.4836 36 1 0.3211 -5.5829 -5.7995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357927626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:18 Heat of formation + Delta-G solvation = 136.358721 kcal Electronic energy + Delta-G solvation = -22290.727931 eV Core-core repulsion = 19007.774955 eV Total energy + Delta-G solvation = -3282.952976 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.16466 -43.16677 -38.82389 -36.50987 -34.75330 -33.97500 -33.46174 -31.22862 -30.13864 -28.98500 -27.61616 -25.64477 -24.53973 -23.76154 -22.34112 -21.95865 -20.98516 -18.96367 -18.42835 -18.15018 -17.99080 -16.91504 -16.54984 -16.26421 -15.82390 -15.64600 -15.11211 -14.88630 -14.60455 -14.17412 -13.91927 -13.56979 -13.40293 -13.33424 -13.18641 -13.10325 -13.01756 -12.75437 -12.57965 -12.31303 -12.16931 -11.90372 -11.74091 -11.30196 -11.07998 -10.54970 -10.48484 -9.19312 -9.03112 -8.17997 -6.15618 0.23517 1.04593 1.19515 1.25896 1.29734 1.35252 1.45269 1.96530 2.39674 2.50775 3.03337 3.19668 3.27354 3.41426 3.89861 3.99538 4.18600 4.26925 4.32995 4.39683 4.46649 4.54158 4.56820 4.58917 4.64124 4.81717 5.03575 5.10043 5.16388 5.25190 5.25637 5.48668 5.71466 5.90675 6.04480 6.16423 6.47913 6.60961 6.91845 7.48957 7.58872 8.92516 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.007619 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.399340 B = 3673.952342 C = 4619.999028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.293 5.293 3 N -0.114 5.114 4 N -0.113 5.113 5 N -0.318 5.318 6 C 0.206 3.794 7 C 0.136 3.864 8 N -0.546 5.546 9 C 0.191 3.809 10 C -0.485 4.485 11 H 0.058 0.942 12 C 0.016 3.984 13 N -0.927 5.927 14 Si 0.926 3.074 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.295 1.295 18 C 0.144 3.856 19 C 0.017 3.983 20 C -0.223 4.223 21 C -0.229 4.229 22 C -0.062 4.062 23 O -0.172 6.172 24 H 0.137 0.863 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.141 0.859 29 H -0.012 1.012 30 H 0.024 0.976 31 H 0.258 0.742 32 H 0.056 0.944 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 -8.567 8.018 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.095 5.095 3 N -0.100 5.100 4 N -0.106 5.106 5 N -0.169 5.169 6 C -0.073 4.073 7 C 0.006 3.994 8 N -0.273 5.273 9 C 0.065 3.935 10 C -0.523 4.523 11 H 0.076 0.924 12 C -0.182 4.182 13 N -0.569 5.569 14 Si 0.753 3.247 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.222 1.222 18 C 0.017 3.983 19 C -0.034 4.034 20 C -0.243 4.243 21 C -0.248 4.248 22 C -0.131 4.131 23 O -0.066 6.066 24 H 0.155 0.845 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.158 0.842 29 H 0.006 0.994 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.175 0.825 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.003 -7.265 7.804 10.662 hybrid contribution -1.371 -0.124 -1.440 1.992 sum -1.374 -7.389 6.363 9.848 Atomic orbital electron populations 1.22884 0.69452 1.07669 1.07205 1.48612 1.11798 1.03759 1.45375 1.78694 0.97984 1.14059 1.19294 1.78467 1.10627 1.04734 1.16820 1.74839 1.19347 1.03123 1.19595 1.26257 0.86012 0.95052 0.99971 1.20753 1.03390 0.83782 0.91468 1.62037 1.50619 1.03162 1.11473 1.19876 0.87690 0.92510 0.93426 1.21384 1.14478 1.24781 0.91681 0.92414 1.25391 0.95513 0.95675 1.01605 1.69946 1.21092 1.30690 1.35176 0.85958 0.78440 0.77471 0.82791 1.18979 1.20050 1.22186 1.20548 1.01823 0.87606 0.88300 1.22255 0.87237 1.00964 0.92969 1.21634 0.99485 1.07793 0.95412 1.21957 0.96234 1.08224 0.98369 1.24236 0.96779 1.02248 0.89806 1.84145 1.39536 1.62816 1.20151 0.84513 0.87755 0.87388 0.89288 0.84153 0.99421 0.95809 0.93293 0.92633 0.84754 0.82701 0.82483 0.77762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.73 10.16 127.77 1.30 3.03 16 2 N -0.29 -9.95 3.23 -359.65 -1.16 -11.11 16 3 N -0.11 -4.44 13.29 37.02 0.49 -3.95 16 4 N -0.11 -4.73 13.43 37.01 0.50 -4.23 16 5 N -0.32 -12.71 12.36 -50.45 -0.62 -13.33 16 6 C 0.21 7.05 6.63 138.13 0.92 7.97 16 7 C 0.14 3.62 5.22 85.56 0.45 4.07 16 8 N -0.55 -19.15 4.54 -909.98 -4.13 -23.28 16 9 C 0.19 8.42 3.31 85.56 0.28 8.71 16 10 C -0.48 -25.19 6.65 25.60 0.17 -25.02 16 11 H 0.06 3.13 5.61 -2.91 -0.02 3.12 16 12 C 0.02 0.86 5.46 84.65 0.46 1.32 16 13 N -0.93 -51.45 13.29 21.45 0.28 -51.17 16 14 Si 0.93 44.07 29.54 68.60 2.03 46.09 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 18 C 0.14 4.21 5.47 85.56 0.47 4.68 16 19 C 0.02 0.61 4.37 24.83 0.11 0.71 16 20 C -0.22 -7.53 10.57 22.19 0.23 -7.30 16 21 C -0.23 -7.57 10.91 22.19 0.24 -7.33 16 22 C -0.06 -2.20 11.88 66.97 0.80 -1.41 16 23 O -0.17 -6.93 8.76 -2.43 -0.02 -6.95 16 24 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.11 3.09 5.13 -2.39 -0.01 3.08 16 27 H 0.09 1.78 7.81 -2.39 -0.02 1.76 16 28 H 0.14 2.86 8.06 -2.39 -0.02 2.84 16 29 H -0.01 -0.54 7.62 -2.39 -0.02 -0.56 16 30 H 0.02 1.11 4.04 -2.38 -0.01 1.10 16 31 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.06 1.52 7.94 -2.39 -0.02 1.50 16 33 H 0.13 2.77 8.02 -2.39 -0.02 2.75 16 34 H 0.16 4.51 8.06 -2.91 -0.02 4.48 16 35 H 0.16 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.21 5.97 8.06 -2.91 -0.02 5.95 16 Total: -1.00 -71.25 303.37 3.89 -67.36 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.11 Total: 11.14 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.42 Total: -10.56 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.64 Total: -107.08 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.02 Total: -6.95 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.25 3.89 -67.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357927626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.718 kcal (2) G-P(sol) polarization free energy of solvation -71.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds