Wall clock time and date at job start Mon Mar 30 2020 02:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37096 * 119.99600 * 2 1 4 4 H 1.08004 * 119.99790 * 204.46265 * 3 2 1 5 5 C 1.38950 * 120.00274 * 24.46895 * 3 2 1 6 6 N 1.31404 * 120.00134 * 12.54233 * 5 3 2 7 7 Si 1.86807 * 119.99827 * 192.54205 * 5 3 2 8 8 H 1.48495 * 109.47005 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.46864 * 119.99836 * 7 5 3 10 10 H 1.48504 * 109.46897 * 239.99777 * 7 5 3 11 11 C 1.34773 * 120.00062 * 179.97438 * 2 1 3 12 12 O 1.21290 * 119.99791 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99963 * 0.02562 * 11 2 1 14 14 C 1.53778 * 113.69327 * 80.93245 * 13 11 2 15 15 C 1.53778 * 87.08525 * 89.12560 * 14 13 11 16 16 C 1.50693 * 113.61557 * 139.98079 * 15 14 13 17 17 C 1.38264 * 119.98900 * 142.50654 * 16 15 14 18 18 C 1.38223 * 120.05226 * 180.02562 * 17 16 15 19 19 C 1.38219 * 120.03121 * 359.97438 * 18 17 16 20 20 C 1.38441 * 119.96860 * 0.02562 * 19 18 17 21 21 F 1.35100 * 120.02465 * 180.02562 * 20 19 18 22 22 C 1.38176 * 119.98806 * 322.23002 * 16 15 14 23 23 C 1.53779 * 113.61346 * 178.46856 * 13 11 2 24 24 H 1.08995 * 109.47303 * 265.77243 * 1 2 3 25 25 H 1.09005 * 109.47008 * 25.77373 * 1 2 3 26 26 H 1.09003 * 109.46894 * 145.77168 * 1 2 3 27 27 H 0.96997 * 120.00679 * 179.97438 * 6 5 3 28 28 H 1.08999 * 112.84544 * 309.65844 * 13 11 2 29 29 H 1.09001 * 113.61303 * 203.67783 * 14 13 11 30 30 H 1.08999 * 113.61339 * 334.57485 * 14 13 11 31 31 H 1.09000 * 113.61546 * 270.88642 * 15 14 13 32 32 H 1.08002 * 119.97278 * 359.97262 * 17 16 15 33 33 H 1.08008 * 119.98726 * 180.02562 * 18 17 16 34 34 H 1.07992 * 120.01969 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.01464 * 0.02562 * 22 16 15 36 36 H 1.08998 * 113.61922 * 25.34130 * 23 13 11 37 37 H 1.09000 * 113.61435 * 156.25389 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1577 1.2293 -0.3873 5 6 1.5492 2.3366 0.4984 6 7 0.4348 2.2485 1.1891 7 14 2.3253 4.0070 0.1866 8 1 3.5665 3.8351 -0.6103 9 1 1.3710 4.8643 -0.5614 10 1 2.6556 4.6493 1.4841 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 0.8848 -2.8968 -1.3901 15 6 2.2330 -3.6141 -1.5701 16 6 2.1185 -4.9519 -2.2543 17 6 3.0926 -5.3565 -3.1482 18 6 2.9886 -6.5831 -3.7769 19 6 1.9107 -7.4069 -3.5123 20 6 0.9347 -7.0027 -2.6175 21 9 -0.1191 -7.8072 -2.3576 22 6 1.0430 -5.7761 -1.9838 23 6 2.2972 -3.7100 -0.0365 24 1 -0.3633 -0.0758 1.0248 25 1 -0.3633 0.9255 -0.4469 26 1 -0.3633 -0.8497 -0.5781 27 1 0.0153 3.0508 1.5374 28 1 0.6183 -2.5181 0.7736 29 1 0.0308 -3.5735 -1.3590 30 1 0.7395 -2.0618 -2.0755 31 1 3.0097 -2.9823 -2.0009 32 1 3.9350 -4.7134 -3.3559 33 1 3.7504 -6.8984 -4.4747 34 1 1.8294 -8.3649 -4.0040 35 1 0.2842 -5.4616 -1.2825 36 1 3.2924 -3.5316 0.3708 37 1 1.8295 -4.6091 0.3646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363951522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:04 Heat of formation + Delta-G solvation = -31.028233 kcal Electronic energy + Delta-G solvation = -20963.899326 eV Core-core repulsion = 17621.475194 eV Total energy + Delta-G solvation = -3342.424132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.95897 -40.27034 -38.63019 -36.61079 -34.54742 -31.69773 -31.13609 -30.57136 -26.74272 -25.76073 -25.31559 -24.33282 -22.91399 -21.97231 -20.16999 -17.88939 -17.65627 -16.83208 -16.33328 -16.14801 -15.85849 -15.65582 -15.00526 -14.81155 -14.13147 -13.99474 -13.69176 -13.61749 -13.13181 -12.86711 -12.33454 -12.16572 -11.92471 -11.74599 -11.52319 -11.46181 -11.27941 -11.21577 -10.86485 -10.65425 -10.31492 -10.29282 -10.07540 -9.91256 -9.00691 -8.97152 -8.66661 -8.35129 -7.64357 -6.31984 -3.88307 1.09679 1.13084 3.14763 3.25333 3.32025 3.49756 3.85087 4.13085 4.14996 4.61133 4.62358 4.82211 4.95238 5.00427 5.02448 5.16234 5.16892 5.28987 5.31076 5.43904 5.81924 5.87881 5.91498 5.98507 6.01046 6.09461 6.18115 6.26275 6.31215 6.39693 6.46612 6.62796 6.76015 6.83363 6.86861 7.21239 7.56912 8.16269 8.50101 9.19897 9.44342 10.01247 10.72980 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.038103 B = 0.003667 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.664379 B = 7632.939087 C = 7993.142455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.444 5.444 3 C -0.306 4.306 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.882 5.882 7 Si 0.924 3.076 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.464 3.536 12 O -0.588 6.588 13 C -0.123 4.123 14 C -0.119 4.119 15 C -0.075 4.075 16 C -0.028 4.028 17 C -0.127 4.127 18 C -0.090 4.090 19 C -0.167 4.167 20 C 0.097 3.903 21 F -0.144 7.144 22 C -0.153 4.153 23 C -0.109 4.109 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.028 0.972 27 H 0.267 0.733 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 -14.870 -7.608 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.162 5.162 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.521 5.521 7 Si 0.751 3.249 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.252 3.748 12 O -0.473 6.473 13 C -0.145 4.145 14 C -0.157 4.157 15 C -0.093 4.093 16 C -0.029 4.029 17 C -0.145 4.145 18 C -0.108 4.108 19 C -0.185 4.185 20 C 0.078 3.922 21 F -0.122 7.122 22 C -0.171 4.171 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.103 0.897 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.874 -14.724 -7.503 16.548 hybrid contribution -0.187 0.745 0.063 0.771 sum -1.061 -13.979 -7.440 15.871 Atomic orbital electron populations 1.21480 0.81282 0.99912 1.00529 1.43520 1.05456 1.04650 1.62552 1.19693 1.00627 0.84216 1.38902 0.88459 1.25341 0.96623 1.00114 0.95197 1.69998 1.19250 1.29500 1.33393 0.85891 0.79194 0.81570 0.78222 1.19230 1.20677 1.20756 1.19532 0.87647 0.84248 0.83417 1.90494 1.13902 1.86984 1.55895 1.22300 0.99045 0.94721 0.98441 1.23013 0.96014 0.99913 0.96756 1.21646 0.99564 0.92022 0.96098 1.19792 0.92776 0.95551 0.94735 1.21223 0.99418 0.96718 0.97157 1.20991 0.97070 0.93787 0.98988 1.21076 0.95322 1.01662 1.00487 1.17697 0.85937 0.89838 0.98776 1.91486 1.55116 1.72576 1.93039 1.21042 1.00519 0.93277 1.02293 1.22813 1.01516 0.96394 0.93895 0.93190 0.90865 0.95316 0.92331 0.89383 0.89722 0.90755 0.87443 0.85212 0.85203 0.85168 0.84589 0.89712 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 8.33 59.85 0.50 2.98 16 2 N -0.44 -11.28 3.01 -122.19 -0.37 -11.65 16 3 C -0.31 -8.53 9.24 -14.93 -0.14 -8.67 16 4 H 0.10 2.83 7.45 -52.48 -0.39 2.44 16 5 C 0.03 0.80 5.05 -17.47 -0.09 0.71 16 6 N -0.88 -23.56 10.83 55.50 0.60 -22.96 16 7 Si 0.92 20.72 29.57 -169.99 -5.03 15.69 16 8 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 C 0.46 11.08 6.88 -10.99 -0.08 11.00 16 12 O -0.59 -15.92 15.54 5.55 0.09 -15.84 16 13 C -0.12 -2.21 3.04 -90.96 -0.28 -2.48 16 14 C -0.12 -1.78 6.10 -25.92 -0.16 -1.94 16 15 C -0.08 -1.11 3.65 -90.96 -0.33 -1.44 16 16 C -0.03 -0.36 5.29 -104.64 -0.55 -0.92 16 17 C -0.13 -1.45 9.71 -39.58 -0.38 -1.84 16 18 C -0.09 -0.89 10.04 -39.59 -0.40 -1.29 16 19 C -0.17 -1.72 10.03 -39.51 -0.40 -2.12 16 20 C 0.10 1.15 7.30 -39.41 -0.29 0.87 16 21 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 22 C -0.15 -1.86 8.58 -39.51 -0.34 -2.20 16 23 C -0.11 -1.71 6.92 -25.92 -0.18 -1.89 16 24 H 0.05 1.14 7.83 -51.93 -0.41 0.73 16 25 H 0.07 1.72 6.80 -51.93 -0.35 1.37 16 26 H 0.03 0.52 5.97 -51.93 -0.31 0.21 16 27 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 28 H 0.09 1.48 7.93 -51.93 -0.41 1.07 16 29 H 0.08 1.06 6.32 -51.93 -0.33 0.73 16 30 H 0.07 1.19 7.80 -51.93 -0.41 0.78 16 31 H 0.11 1.79 8.09 -51.93 -0.42 1.36 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.14 1.54 6.67 -52.48 -0.35 1.19 16 36 H 0.08 1.50 7.41 -51.93 -0.38 1.12 16 37 H 0.08 1.06 7.71 -51.93 -0.40 0.66 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -30.47 310.17 -7.67 -38.14 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.56 Total: 2.91 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -3.11 Total: -9.22 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.23 Total: -34.61 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.09 Total: -15.84 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.47 -7.67 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363951522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.111 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds