Wall clock time and date at job start Mon Mar 30 2020 02:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 103.00303 * 2 1 4 4 H 1.08997 * 110.27423 * 52.90415 * 3 2 1 5 5 C 1.54601 * 110.30468 * 290.71664 * 3 2 1 6 6 C 1.54942 * 102.91721 * 219.12429 * 5 3 2 7 7 N 1.48528 * 103.22668 * 37.41696 * 6 5 3 8 8 C 1.46902 * 110.99706 * 200.27946 * 7 6 5 9 9 C 1.50705 * 109.47093 * 307.39522 * 8 7 6 10 10 C 1.38641 * 119.74621 * 269.72591 * 9 8 7 11 11 C 1.37614 * 120.24213 * 179.76348 * 10 9 8 12 12 C 1.40715 * 119.74927 * 0.48581 * 11 10 9 13 13 C 1.41396 * 120.24343 * 179.78973 * 12 11 10 14 14 H 1.07999 * 120.00600 * 24.37863 * 13 12 11 15 15 C 1.39953 * 119.99640 * 204.37350 * 13 12 11 16 16 N 1.30820 * 120.00123 * 17.86851 * 15 13 12 17 17 Si 1.86796 * 119.99623 * 197.86314 * 15 13 12 18 18 H 1.48501 * 109.47056 * 90.00370 * 17 15 13 19 19 H 1.48508 * 109.46885 * 210.00023 * 17 15 13 20 20 H 1.48497 * 109.47819 * 330.00058 * 17 15 13 21 21 C 1.40712 * 119.50948 * 359.76776 * 12 11 10 22 22 C 1.37621 * 119.74898 * 0.02562 * 21 12 11 23 23 C 1.47899 * 105.81946 * 320.78776 * 7 6 5 24 24 H 1.09004 * 109.46949 * 60.00269 * 1 2 3 25 25 H 1.08994 * 109.47139 * 299.99942 * 1 2 3 26 26 H 1.09002 * 109.46876 * 179.97438 * 1 2 3 27 27 H 1.08997 * 110.72328 * 337.48340 * 5 3 2 28 28 H 1.09000 * 110.72103 * 100.76561 * 5 3 2 29 29 H 1.09001 * 110.66446 * 278.97854 * 6 5 3 30 30 H 1.09003 * 110.80673 * 155.91873 * 6 5 3 31 31 H 1.08999 * 109.47294 * 67.39424 * 8 7 6 32 32 H 1.09001 * 109.47161 * 187.39313 * 8 7 6 33 33 H 1.07996 * 119.87547 * 0.02562 * 10 9 8 34 34 H 1.08004 * 120.12580 * 180.23296 * 11 10 9 35 35 H 0.96997 * 119.99866 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.12529 * 179.97438 * 21 12 11 37 37 H 1.07993 * 119.87955 * 179.97438 * 22 21 12 38 38 H 1.09004 * 109.91977 * 265.97782 * 23 7 6 39 39 H 1.09002 * 110.07949 * 144.77730 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7062 2.2743 0.8155 5 6 1.8431 2.4056 -1.3562 6 6 3.0140 3.3863 -1.6169 7 7 4.1966 2.6471 -1.1058 8 6 5.3081 3.5644 -0.8214 9 6 5.5793 4.4165 -2.0344 10 6 6.4888 3.9860 -2.9882 11 6 6.7405 4.7537 -4.1022 12 6 6.0784 5.9845 -4.2662 13 6 6.3325 6.7837 -5.4046 14 1 6.6975 6.3286 -6.3134 15 6 6.1109 8.1646 -5.3536 16 7 6.0121 8.7691 -4.1976 17 14 5.9562 9.1447 -6.9363 18 1 4.5328 9.1827 -7.3579 19 1 6.4427 10.5295 -6.7104 20 1 6.7701 8.5012 -7.9987 21 6 5.1614 6.4138 -3.2891 22 6 4.9219 5.6278 -2.1851 23 6 3.7441 1.9647 0.1258 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7929 1.6481 -2.1383 28 1 0.8987 2.9444 -1.2784 29 1 2.8702 4.3133 -1.0617 30 1 3.1186 3.5899 -2.6826 31 1 5.0447 4.2044 0.0207 32 1 6.2003 2.9887 -0.5749 33 1 6.9984 3.0427 -2.8584 34 1 7.4466 4.4147 -4.8458 35 1 5.8582 9.7261 -4.1623 36 1 4.6479 7.3569 -3.4047 37 1 4.2188 5.9554 -1.4337 38 1 3.9680 2.5819 0.9960 39 1 4.2373 0.9972 0.2203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399167809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:44 Heat of formation + Delta-G solvation = 17.058519 kcal Electronic energy + Delta-G solvation = -18817.660625 eV Core-core repulsion = 16043.534867 eV Total energy + Delta-G solvation = -2774.125758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.95997 -37.24028 -33.99491 -32.26556 -29.83544 -29.28605 -28.91940 -28.68222 -26.28699 -23.61211 -21.43469 -20.96462 -20.61750 -19.68879 -17.29683 -16.71935 -15.94740 -15.32428 -15.24969 -14.28898 -14.20174 -14.03854 -13.73218 -13.52379 -13.40042 -13.00661 -12.58497 -12.26466 -12.06517 -11.96976 -11.87874 -11.51519 -11.32505 -11.11880 -10.97472 -10.88292 -10.78889 -10.46812 -10.36412 -9.90627 -9.55858 -9.36945 -9.13689 -8.10407 -7.75214 -7.44258 -7.29271 -6.77528 -4.35628 1.57180 2.44520 2.72626 3.05628 3.08866 3.09814 3.17315 3.92051 4.28951 4.46682 4.62018 4.79235 4.93912 4.96212 5.07398 5.38759 5.45435 5.49632 5.63310 5.68035 5.75991 5.81244 5.86057 5.99591 6.17961 6.27172 6.37110 6.37556 6.45281 6.93965 7.06963 7.17193 7.29835 7.36960 7.41382 7.61703 7.88279 8.05393 8.13250 8.30223 8.63589 8.89304 8.97473 10.16927 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.003437 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.100785 B = 8143.893517 C = 8451.648606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.250 6.250 3 C -0.062 4.062 4 H 0.087 0.913 5 C -0.121 4.121 6 C 0.049 3.951 7 N -0.506 5.506 8 C 0.111 3.889 9 C -0.214 4.214 10 C -0.068 4.068 11 C -0.228 4.228 12 C 0.113 3.887 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.793 5.793 17 Si 0.907 3.093 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.166 4.166 22 C -0.093 4.093 23 C 0.057 3.943 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.280 0.720 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.147 -9.136 7.431 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.024 6.024 3 C -0.192 4.192 4 H 0.105 0.895 5 C -0.161 4.161 6 C -0.079 4.079 7 N -0.230 5.230 8 C -0.016 4.016 9 C -0.216 4.216 10 C -0.087 4.087 11 C -0.248 4.248 12 C 0.111 3.889 13 C -0.492 4.492 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.186 4.186 22 C -0.112 4.112 23 C -0.072 4.072 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.290 -10.163 7.191 14.957 hybrid contribution -1.177 2.220 0.051 2.513 sum -9.467 -7.943 7.242 14.323 Atomic orbital electron populations 1.23363 0.95017 1.06154 1.04798 1.86910 1.06516 1.11095 1.97833 1.24057 1.00322 0.93558 1.01237 0.89496 1.22964 0.98519 0.99379 0.95272 1.23134 0.88213 0.94347 1.02245 1.64988 1.06331 1.27671 1.24061 1.20928 0.93103 0.92269 0.95270 1.18825 1.06596 0.97302 0.98873 1.20341 0.96992 0.97146 0.94199 1.20971 1.05246 0.99137 0.99430 1.17623 0.88478 0.90775 0.92070 1.19621 1.39141 0.91686 0.98780 0.90448 1.25911 0.92316 0.98522 0.97403 1.69829 1.34777 1.11277 1.25979 0.86327 0.79591 0.78593 0.82300 1.19286 1.20355 1.18596 1.21267 1.00973 1.00485 0.95856 1.20508 0.98831 0.94375 0.97468 1.22662 0.91033 1.00334 0.93218 0.90454 0.90832 0.88359 0.89498 0.91250 0.93787 0.88992 0.95604 0.91434 0.89381 0.89091 0.90924 0.86592 0.90056 0.93100 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.69 101.05 1.08 0.05 16 2 S -0.25 -2.92 21.37 -107.50 -2.30 -5.22 16 3 C -0.06 -0.74 3.49 -25.37 -0.09 -0.83 16 4 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.12 -1.53 6.56 -24.86 -0.16 -1.69 16 6 C 0.05 0.77 4.97 -1.90 -0.01 0.76 16 7 N -0.51 -8.27 5.39 -231.89 -1.25 -9.52 16 8 C 0.11 1.96 5.18 -4.97 -0.03 1.94 16 9 C -0.21 -4.57 4.62 -104.32 -0.48 -5.05 16 10 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 11 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 12 C 0.11 3.00 5.57 -106.83 -0.60 2.40 16 13 C -0.46 -12.25 9.05 -37.74 -0.34 -12.59 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 15 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 16 N -0.79 -20.38 10.95 55.55 0.61 -19.77 16 17 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 21 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 22 C -0.09 -2.10 8.30 -39.66 -0.33 -2.43 16 23 C 0.06 0.77 6.39 -2.76 -0.02 0.75 16 24 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.09 1.15 7.82 -51.93 -0.41 0.74 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.69 7.07 -51.93 -0.37 0.33 16 30 H 0.09 1.65 7.72 -51.93 -0.40 1.25 16 31 H 0.03 0.44 7.75 -51.93 -0.40 0.04 16 32 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 35 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 36 H 0.12 3.07 6.15 -52.48 -0.32 2.75 16 37 H 0.08 1.68 7.37 -52.49 -0.39 1.29 16 38 H 0.05 0.65 7.57 -51.93 -0.39 0.26 16 39 H 0.08 1.15 7.61 -51.93 -0.40 0.76 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -26.89 326.92 -11.21 -38.10 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.00 Total: 5.31 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -2.16 Total: -27.38 kcal Atomic # 7 Polarization: -28.65 SS G_CDS: -0.64 Total: -29.29 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.30 Total: -5.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.89 -11.21 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399167809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.160 kcal (2) G-P(sol) polarization free energy of solvation -26.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds