Wall clock time and date at job start Mon Mar 30 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 103.00303 * 2 1 4 4 H 1.08997 * 110.27423 * 52.90415 * 3 2 1 5 5 C 1.54601 * 110.30468 * 290.71664 * 3 2 1 6 6 C 1.54942 * 102.91721 * 219.12429 * 5 3 2 7 7 N 1.48528 * 103.22668 * 37.41696 * 6 5 3 8 8 C 1.46902 * 110.99706 * 200.27946 * 7 6 5 9 9 C 1.50705 * 109.47093 * 307.39522 * 8 7 6 10 10 C 1.38641 * 119.74621 * 269.72591 * 9 8 7 11 11 C 1.37614 * 120.24213 * 179.76348 * 10 9 8 12 12 C 1.40715 * 119.74927 * 0.48581 * 11 10 9 13 13 C 1.41396 * 120.24343 * 179.78973 * 12 11 10 14 14 H 1.07999 * 120.00600 * 24.37863 * 13 12 11 15 15 C 1.39953 * 119.99640 * 204.37350 * 13 12 11 16 16 N 1.30820 * 120.00123 * 17.86851 * 15 13 12 17 17 Si 1.86796 * 119.99623 * 197.86314 * 15 13 12 18 18 H 1.48501 * 109.47056 * 90.00370 * 17 15 13 19 19 H 1.48508 * 109.46885 * 210.00023 * 17 15 13 20 20 H 1.48497 * 109.47819 * 330.00058 * 17 15 13 21 21 C 1.40712 * 119.50948 * 359.76776 * 12 11 10 22 22 C 1.37621 * 119.74898 * 0.02562 * 21 12 11 23 23 C 1.47899 * 105.81946 * 320.78776 * 7 6 5 24 24 H 1.09004 * 109.46949 * 60.00269 * 1 2 3 25 25 H 1.08994 * 109.47139 * 299.99942 * 1 2 3 26 26 H 1.09002 * 109.46876 * 179.97438 * 1 2 3 27 27 H 1.08997 * 110.72328 * 337.48340 * 5 3 2 28 28 H 1.09000 * 110.72103 * 100.76561 * 5 3 2 29 29 H 1.09001 * 110.66446 * 278.97854 * 6 5 3 30 30 H 1.09003 * 110.80673 * 155.91873 * 6 5 3 31 31 H 1.08999 * 109.47294 * 67.39424 * 8 7 6 32 32 H 1.09001 * 109.47161 * 187.39313 * 8 7 6 33 33 H 1.07996 * 119.87547 * 0.02562 * 10 9 8 34 34 H 1.08004 * 120.12580 * 180.23296 * 11 10 9 35 35 H 0.96997 * 119.99866 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.12529 * 179.97438 * 21 12 11 37 37 H 1.07993 * 119.87955 * 179.97438 * 22 21 12 38 38 H 1.09004 * 109.91977 * 265.97782 * 23 7 6 39 39 H 1.09002 * 110.07949 * 144.77730 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7062 2.2743 0.8155 5 6 1.8431 2.4056 -1.3562 6 6 3.0140 3.3863 -1.6169 7 7 4.1966 2.6471 -1.1058 8 6 5.3081 3.5644 -0.8214 9 6 5.5793 4.4165 -2.0344 10 6 6.4888 3.9860 -2.9882 11 6 6.7405 4.7537 -4.1022 12 6 6.0784 5.9845 -4.2662 13 6 6.3325 6.7837 -5.4046 14 1 6.6975 6.3286 -6.3134 15 6 6.1109 8.1646 -5.3536 16 7 6.0121 8.7691 -4.1976 17 14 5.9562 9.1447 -6.9363 18 1 4.5328 9.1827 -7.3579 19 1 6.4427 10.5295 -6.7104 20 1 6.7701 8.5012 -7.9987 21 6 5.1614 6.4138 -3.2891 22 6 4.9219 5.6278 -2.1851 23 6 3.7441 1.9647 0.1258 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7929 1.6481 -2.1383 28 1 0.8987 2.9444 -1.2784 29 1 2.8702 4.3133 -1.0617 30 1 3.1186 3.5899 -2.6826 31 1 5.0447 4.2044 0.0207 32 1 6.2003 2.9887 -0.5749 33 1 6.9984 3.0427 -2.8584 34 1 7.4466 4.4147 -4.8458 35 1 5.8582 9.7261 -4.1623 36 1 4.6479 7.3569 -3.4047 37 1 4.2188 5.9554 -1.4337 38 1 3.9680 2.5819 0.9960 39 1 4.2373 0.9972 0.2203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399167809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:43 Heat of formation + Delta-G solvation = 3.414734 kcal Electronic energy + Delta-G solvation = -18818.252264 eV Core-core repulsion = 16043.534867 eV Total energy + Delta-G solvation = -2774.717397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32813 -38.90951 -35.77518 -33.72967 -31.43812 -31.06931 -29.88930 -29.65105 -27.93570 -25.22506 -23.09057 -22.24163 -22.02319 -21.31743 -19.21353 -17.71706 -17.25724 -17.01949 -16.40226 -15.84532 -15.72660 -15.48844 -14.86529 -14.65014 -14.42425 -14.27505 -14.07965 -13.79091 -13.56752 -13.33602 -13.12404 -12.99787 -12.85278 -12.68506 -12.31191 -12.25318 -12.18394 -11.97796 -11.86621 -11.35799 -11.21689 -10.99594 -10.77036 -9.44385 -9.30831 -9.12725 -8.63963 -8.63585 -6.32728 0.73590 0.94659 1.17166 1.37670 1.50635 1.51094 1.65453 2.20726 2.67817 3.17938 3.44759 3.65276 3.81374 4.09406 4.23489 4.28876 4.31323 4.35804 4.38261 4.46052 4.50592 4.62359 4.68952 4.77581 4.82891 4.89335 4.92488 5.04637 5.05198 5.13657 5.17277 5.38352 5.48426 5.71886 5.89821 6.01088 6.11002 6.14852 6.28200 6.40889 6.71220 6.95400 7.05025 8.33121 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.003437 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.100785 B = 8143.893517 C = 8451.648606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.291 6.291 3 C -0.052 4.052 4 H 0.105 0.895 5 C -0.111 4.111 6 C 0.048 3.952 7 N -0.520 5.520 8 C 0.116 3.884 9 C -0.200 4.200 10 C -0.073 4.073 11 C -0.245 4.245 12 C 0.081 3.919 13 C -0.503 4.503 14 H 0.072 0.928 15 C 0.036 3.964 16 N -0.825 5.825 17 Si 0.981 3.019 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.188 4.188 22 C -0.090 4.090 23 C 0.057 3.943 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.288 0.712 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 -9.834 8.564 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.064 6.064 3 C -0.181 4.181 4 H 0.124 0.876 5 C -0.151 4.151 6 C -0.080 4.080 7 N -0.245 5.245 8 C -0.011 4.011 9 C -0.201 4.201 10 C -0.092 4.092 11 C -0.265 4.265 12 C 0.079 3.921 13 C -0.532 4.532 14 H 0.090 0.910 15 C -0.178 4.178 16 N -0.451 5.451 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.184 1.184 21 C -0.208 4.208 22 C -0.109 4.109 23 C -0.071 4.071 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.675 -10.879 8.339 16.777 hybrid contribution -0.785 2.287 -0.182 2.425 sum -10.460 -8.591 8.156 15.803 Atomic orbital electron populations 1.23428 0.91620 1.07351 1.05758 1.87078 1.10312 1.11130 1.97916 1.23953 0.99221 0.93737 1.01208 0.87633 1.22887 0.98186 0.98524 0.95522 1.23056 0.89439 0.95250 1.00301 1.64881 1.06367 1.27278 1.25954 1.20861 0.94379 0.92337 0.93508 1.19227 1.04521 0.96894 0.99452 1.20635 0.97223 0.97712 0.93631 1.21154 1.05596 0.99210 1.00531 1.17950 0.89454 0.91847 0.92862 1.19838 1.41459 0.93009 0.98932 0.90983 1.26730 0.91316 0.98947 1.00855 1.69874 1.35305 1.11972 1.27962 0.85222 0.79684 0.77174 0.77731 1.18647 1.19169 1.18367 1.21232 1.01688 1.00653 0.97225 1.20707 0.98892 0.94438 0.96880 1.22675 0.92259 0.99983 0.92198 0.89911 0.89415 0.87084 0.90327 0.89041 0.93824 0.92045 0.94429 0.90420 0.87144 0.88932 0.90175 0.88280 0.88070 0.91833 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.69 113.37 1.21 -0.31 16 2 S -0.29 -6.12 21.37 -56.49 -1.21 -7.32 16 3 C -0.05 -1.09 3.49 31.47 0.11 -0.98 16 4 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 5 C -0.11 -2.55 6.56 31.80 0.21 -2.34 16 6 C 0.05 1.45 4.97 86.65 0.43 1.88 16 7 N -0.52 -16.04 5.39 -887.56 -4.78 -20.83 16 8 C 0.12 3.87 5.18 85.56 0.44 4.32 16 9 C -0.20 -8.36 4.62 -19.67 -0.09 -8.45 16 10 C -0.07 -3.28 9.67 22.22 0.21 -3.07 16 11 C -0.25 -12.41 9.80 22.73 0.22 -12.18 16 12 C 0.08 4.47 5.57 -21.29 -0.12 4.35 16 13 C -0.50 -27.74 9.05 23.46 0.21 -27.52 16 14 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 15 C 0.04 1.85 5.14 85.26 0.44 2.29 16 16 N -0.83 -43.53 10.95 21.83 0.24 -43.30 16 17 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 19 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 C -0.19 -9.94 8.70 22.73 0.20 -9.74 16 22 C -0.09 -4.10 8.30 22.22 0.18 -3.91 16 23 C 0.06 1.41 6.39 86.44 0.55 1.96 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.95 7.82 -2.39 -0.02 1.93 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.30 7.07 -2.39 -0.02 1.28 16 30 H 0.06 2.21 7.72 -2.39 -0.02 2.19 16 31 H 0.04 1.18 7.75 -2.39 -0.02 1.16 16 32 H 0.08 2.45 8.08 -2.39 -0.02 2.43 16 33 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 36 H 0.10 5.48 6.15 -2.91 -0.02 5.47 16 37 H 0.10 4.11 7.37 -2.91 -0.02 4.08 16 38 H 0.06 1.42 7.57 -2.39 -0.02 1.40 16 39 H 0.08 2.06 7.61 -2.39 -0.02 2.04 16 Total: -1.00 -59.56 326.92 1.51 -58.04 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 1.02 Total: 26.41 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 4.22 Total: -53.71 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -4.54 Total: -64.12 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 16 Polarization: -6.12 SS G_CDS: -1.21 Total: -7.32 kcal Total: -59.56 1.51 -58.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399167809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.458 kcal (2) G-P(sol) polarization free energy of solvation -59.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds