Wall clock time and date at job start Mon Mar 30 2020 02:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 110.99741 * 2 1 4 4 C 1.46897 * 111.00031 * 123.96085 * 2 1 3 5 5 C 1.53501 * 114.20421 * 180.02562 * 4 2 1 6 6 N 1.47067 * 87.98387 * 220.34130 * 5 4 2 7 7 S 1.65600 * 136.05698 * 207.07813 * 6 5 4 8 8 O 1.42094 * 106.40300 * 336.46700 * 7 6 5 9 9 O 1.42101 * 106.40188 * 203.54144 * 7 6 5 10 10 N 1.65602 * 107.21325 * 90.00908 * 7 6 5 11 11 C 1.46507 * 119.99575 * 269.99661 * 10 7 6 12 12 C 1.46496 * 120.00281 * 90.00109 * 10 7 6 13 13 C 1.50706 * 109.47106 * 264.99512 * 12 10 7 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 10 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00200 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00139 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47145 * 89.99836 * 17 15 13 19 19 H 1.48496 * 109.47547 * 210.00333 * 17 15 13 20 20 H 1.48499 * 109.47030 * 330.00237 * 17 15 13 21 21 C 1.47072 * 87.88286 * 27.34327 * 6 5 4 22 22 H 1.08999 * 109.46694 * 296.04039 * 1 2 3 23 23 H 1.09000 * 109.47255 * 56.04465 * 1 2 3 24 24 H 1.09002 * 109.46889 * 176.04203 * 1 2 3 25 25 H 1.09008 * 109.47170 * 183.95499 * 3 2 1 26 26 H 1.08998 * 109.47716 * 303.95851 * 3 2 1 27 27 H 1.09005 * 109.46954 * 63.96167 * 3 2 1 28 28 H 1.08996 * 113.28135 * 313.05941 * 4 2 1 29 29 H 1.09000 * 113.46707 * 105.56097 * 5 4 2 30 30 H 1.08996 * 113.46674 * 335.12516 * 5 4 2 31 31 H 1.08998 * 109.46879 * 270.00125 * 11 10 7 32 32 H 1.08989 * 109.47122 * 30.00381 * 11 10 7 33 33 H 1.09004 * 109.46750 * 150.00282 * 11 10 7 34 34 H 1.09001 * 109.47001 * 144.99803 * 12 10 7 35 35 H 1.09000 * 109.47574 * 25.00019 * 12 10 7 36 36 H 0.96999 * 120.00061 * 179.97438 * 16 15 13 37 37 H 1.08998 * 113.46922 * 87.43937 * 21 6 5 38 38 H 1.09004 * 113.46424 * 217.87631 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5281 -0.8135 1.2090 6 7 3.4142 -2.2260 1.6025 7 16 4.3223 -3.2956 2.4821 8 8 5.6573 -2.8101 2.4498 9 8 3.9564 -4.5942 2.0360 10 7 3.8220 -3.1841 4.0568 11 6 4.4641 -2.2291 4.9635 12 6 2.7374 -4.0404 4.5433 13 6 1.4303 -3.2959 4.4523 14 1 1.4095 -2.2861 4.0700 15 6 0.2610 -3.9039 4.8572 16 7 -0.8798 -3.2544 4.7774 17 14 0.2968 -5.6508 5.5179 18 1 0.4982 -5.6197 6.9888 19 1 -0.9903 -6.3236 5.2086 20 1 1.4113 -6.3979 4.8815 21 6 2.1424 -2.2722 0.8655 22 1 -0.3633 0.4512 0.9234 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 3.0828 1.3433 -0.0709 26 1 1.5897 1.9164 -0.8523 27 1 1.7044 1.8723 0.9234 28 1 1.5117 -0.5209 2.0829 29 1 3.9461 -0.1777 1.9895 30 1 4.0123 -0.6696 0.2431 31 1 5.3094 -2.7086 5.4570 32 1 4.8159 -1.3684 4.3948 33 1 3.7447 -1.8998 5.7132 34 1 2.9282 -4.3141 5.5810 35 1 2.6851 -4.9423 3.9334 36 1 -1.7025 -3.6823 5.0619 37 1 2.2613 -2.5130 -0.1909 38 1 1.3798 -2.8793 1.3534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408103345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:35 Heat of formation + Delta-G solvation = -45.446466 kcal Electronic energy + Delta-G solvation = -21165.639999 eV Core-core repulsion = 17977.954559 eV Total energy + Delta-G solvation = -3187.685440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70816 -38.36868 -37.32672 -36.97897 -36.63454 -34.50029 -30.27837 -29.09168 -28.69522 -26.82341 -26.54305 -24.48686 -23.76369 -21.15538 -19.83567 -19.17500 -18.74814 -18.30259 -17.39780 -17.05800 -16.40767 -15.91871 -15.81932 -15.44409 -14.95066 -14.62248 -14.51064 -14.37996 -14.20020 -13.69500 -13.56116 -13.43661 -13.30078 -13.15301 -13.10071 -13.04846 -12.98204 -12.46945 -12.45504 -12.33813 -12.03546 -11.96930 -11.67920 -11.44195 -10.77110 -10.11928 -9.80321 -9.35111 -8.29228 -6.32801 -0.45611 1.34251 1.39121 1.48405 1.85795 2.34000 2.48195 3.04658 3.06103 3.11048 3.42030 3.79803 4.01972 4.18305 4.35154 4.48360 4.54456 4.57289 4.63400 4.70092 4.71029 4.74396 4.80983 4.89452 4.91805 5.01162 5.06808 5.08449 5.11983 5.28677 5.45570 5.55723 5.75025 6.06432 6.10476 6.30346 6.71025 7.31116 8.85270 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014957 B = 0.008271 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.562189 B = 3384.660018 C = 4607.142961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.536 5.536 3 C 0.021 3.979 4 C 0.051 3.949 5 C 0.142 3.858 6 N -1.053 6.053 7 S 2.826 3.174 8 O -0.997 6.997 9 O -1.009 7.009 10 N -0.996 5.996 11 C 0.097 3.903 12 C 0.219 3.781 13 C -0.534 4.534 14 H 0.055 0.945 15 C 0.025 3.975 16 N -0.932 5.932 17 Si 0.921 3.079 18 H -0.260 1.260 19 H -0.282 1.282 20 H -0.256 1.256 21 C 0.142 3.858 22 H 0.018 0.982 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.023 0.977 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.266 0.734 37 H 0.102 0.898 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 8.109 -6.837 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.127 4.127 4 C -0.060 4.060 5 C 0.017 3.983 6 N -0.894 5.894 7 S 2.837 3.163 8 O -0.981 6.981 9 O -0.994 6.994 10 N -0.837 5.837 11 C -0.048 4.048 12 C 0.094 3.906 13 C -0.573 4.573 14 H 0.073 0.927 15 C -0.174 4.174 16 N -0.572 5.572 17 Si 0.745 3.255 18 H -0.185 1.185 19 H -0.208 1.208 20 H -0.180 1.180 21 C 0.016 3.984 22 H 0.036 0.964 23 H 0.109 0.891 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.035 7.123 -7.400 12.449 hybrid contribution -1.191 -0.263 1.464 1.905 sum 5.844 6.859 -5.936 10.791 Atomic orbital electron populations 1.22395 0.86703 1.02371 1.00871 1.62204 1.08607 1.15002 1.40252 1.22485 1.01642 0.87441 1.01134 1.23469 0.95708 0.93954 0.92906 1.22674 0.94905 0.79170 1.01521 1.60107 1.37697 1.25903 1.65718 1.00299 0.71906 0.71844 0.72296 1.93524 1.34984 1.82226 1.87393 1.93510 1.84849 1.39517 1.81525 1.57470 1.48305 1.50460 1.27454 1.21498 0.97349 0.91421 0.94513 1.19390 0.84727 0.89986 0.96510 1.21584 0.91122 1.01579 1.42996 0.92675 1.25575 0.95059 1.01297 0.95507 1.69997 0.99050 1.39194 1.48966 0.86102 0.78378 0.81067 0.79945 1.18471 1.20788 1.17962 1.22539 0.83078 0.96138 0.96617 0.96363 0.89111 0.92192 0.90036 0.89635 0.95809 0.91830 0.89727 0.87277 0.91484 0.90901 0.90748 0.93556 0.94802 0.92444 0.87970 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.60 127.69 1.23 1.81 16 2 N -0.54 -12.81 5.00 -922.01 -4.61 -17.42 16 3 C 0.02 0.37 9.34 127.69 1.19 1.56 16 4 C 0.05 1.48 3.56 45.47 0.16 1.64 16 5 C 0.14 3.80 7.31 83.18 0.61 4.40 16 6 N -1.05 -36.72 4.29 -549.49 -2.36 -39.07 16 7 S 2.83 113.15 6.65 -56.49 -0.38 112.78 16 8 O -1.00 -39.89 17.21 -128.00 -2.20 -42.10 16 9 O -1.01 -47.17 16.69 -128.00 -2.14 -49.31 16 10 N -1.00 -40.09 3.23 -543.22 -1.75 -41.84 16 11 C 0.10 3.14 10.31 127.77 1.32 4.45 16 12 C 0.22 10.15 4.48 85.64 0.38 10.54 16 13 C -0.53 -28.28 9.94 25.60 0.25 -28.02 16 14 H 0.06 3.14 8.06 -2.91 -0.02 3.11 16 15 C 0.03 1.38 5.47 84.65 0.46 1.84 16 16 N -0.93 -54.28 13.96 21.44 0.30 -53.98 16 17 Si 0.92 42.24 27.47 68.60 1.88 44.12 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.26 -11.45 6.54 99.48 0.65 -10.79 16 21 C 0.14 4.80 8.55 83.26 0.71 5.51 16 22 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 23 H 0.09 1.66 8.12 -2.39 -0.02 1.64 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 1.27 7.08 -2.38 -0.02 1.25 16 26 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 27 H 0.02 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.11 2.42 7.88 -2.39 -0.02 2.40 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 2.06 7.79 -2.39 -0.02 2.04 16 33 H 0.07 2.40 8.07 -2.39 -0.02 2.39 16 34 H 0.05 2.02 7.54 -2.39 -0.02 2.00 16 35 H 0.03 1.68 5.97 -2.39 -0.01 1.66 16 36 H 0.27 14.66 8.31 -92.71 -0.77 13.88 16 37 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -67.35 325.86 -3.97 -71.32 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.97 Total: 11.77 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 6.32 Total: 3.74 kcal Atomic # 7 Polarization: -143.89 SS G_CDS: -8.42 Total: -152.31 kcal Atomic # 8 Polarization: -87.06 SS G_CDS: -4.34 Total: -91.40 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.88 Total: 44.12 kcal Atomic # 16 Polarization: 113.15 SS G_CDS: -0.38 Total: 112.78 kcal Total: -67.35 -3.97 -71.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408103345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.870 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds