Wall clock time and date at job start Mon Mar 30 2020 02:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99974 * 2 1 4 4 N 1.46907 * 109.47260 * 124.53454 * 3 2 1 5 5 C 1.46899 * 110.99905 * 199.67420 * 4 3 2 6 6 C 1.50703 * 109.47102 * 66.04815 * 5 4 3 7 7 H 1.07999 * 119.99798 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99883 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00189 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00060 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47065 * 59.99644 * 10 8 6 12 12 H 1.48503 * 109.47251 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47196 * 299.99849 * 10 8 6 14 14 C 1.46894 * 110.99863 * 75.71737 * 4 3 2 15 15 C 1.50704 * 109.47218 * 198.64617 * 14 4 3 16 16 C 1.38104 * 120.03712 * 255.07193 * 15 14 4 17 17 C 1.38280 * 120.07960 * 179.97438 * 16 15 14 18 18 C 1.38332 * 120.16204 * 0.04142 * 17 16 15 19 19 C 1.38056 * 120.07524 * 359.97438 * 18 17 16 20 20 C 1.38950 * 120.04069 * 74.79057 * 15 14 4 21 21 S 1.76198 * 120.07980 * 0.02562 * 20 15 14 22 22 C 1.81402 * 102.99675 * 179.97438 * 21 20 15 23 23 H 1.07998 * 119.99934 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00111 * 179.97438 * 1 2 3 25 25 H 1.08008 * 119.99835 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47749 * 4.53345 * 3 2 1 27 27 H 1.09006 * 109.46932 * 244.52977 * 3 2 1 28 28 H 1.09000 * 109.46653 * 186.04316 * 5 4 3 29 29 H 1.08999 * 109.47002 * 306.04365 * 5 4 3 30 30 H 0.96993 * 120.00214 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.47510 * 78.64820 * 14 4 3 32 32 H 1.08999 * 109.47841 * 318.64521 * 14 4 3 33 33 H 1.07996 * 119.96638 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.92369 * 180.02562 * 17 16 15 35 35 H 1.07993 * 119.96225 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.04112 * 180.02562 * 19 18 17 37 37 H 1.08989 * 109.47498 * 299.99714 * 22 21 20 38 38 H 1.08999 * 109.47064 * 60.00835 * 22 21 20 39 39 H 1.09001 * 109.46713 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9883 1.3366 1.1410 5 6 3.3877 2.7145 1.4569 6 6 2.1887 3.4854 1.9460 7 1 1.2262 3.0004 2.0147 8 6 2.3204 4.8102 2.3046 9 7 3.4924 5.4009 2.2204 10 14 0.8341 5.7661 2.9100 11 1 0.2911 5.1164 4.1299 12 1 1.2376 7.1593 3.2284 13 1 -0.2083 5.7826 1.8524 14 6 4.1637 0.4923 0.8893 15 6 4.8446 0.1766 2.1962 16 6 6.0238 0.8119 2.5324 17 6 6.6491 0.5233 3.7316 18 6 6.0968 -0.4028 4.5981 19 6 4.9184 -1.0420 4.2684 20 6 4.2837 -0.7497 3.0668 21 16 2.7758 -1.5577 2.6451 22 6 2.4786 -2.6375 4.0721 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3581 2.1320 0.0812 27 1 2.6279 1.3987 -0.9278 28 1 4.1529 2.7020 2.2331 29 1 3.7861 3.1916 0.5616 30 1 3.5851 6.3328 2.4730 31 1 4.8581 1.0213 0.2364 32 1 3.8493 -0.4349 0.4102 33 1 6.4583 1.5350 1.8581 34 1 7.5709 1.0219 3.9922 35 1 6.5880 -0.6260 5.5336 36 1 4.4875 -1.7646 4.9456 37 1 3.3104 -3.3333 4.1807 38 1 2.3911 -2.0318 4.9740 39 1 1.5551 -3.1959 3.9189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428857490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:38 Heat of formation + Delta-G solvation = 50.685173 kcal Electronic energy + Delta-G solvation = -19444.714318 eV Core-core repulsion = 16672.046721 eV Total energy + Delta-G solvation = -2772.667597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98348 -36.78899 -33.15134 -32.58037 -31.00472 -30.77515 -28.63282 -27.26428 -25.81211 -23.76868 -22.49444 -21.39276 -20.22477 -19.02006 -17.15574 -16.38520 -15.77822 -15.26624 -14.89620 -14.53719 -14.26539 -14.07076 -13.82248 -13.57125 -13.53668 -13.02716 -12.41805 -12.31459 -12.12712 -12.08519 -11.74275 -11.36370 -11.21330 -10.89607 -10.75071 -10.70639 -10.62432 -10.16628 -9.84154 -9.68224 -9.36374 -9.13675 -8.75473 -8.45239 -8.36545 -7.20998 -6.88403 -5.97564 -3.97531 1.59920 1.70276 1.89953 2.78821 2.92031 3.36508 3.40171 3.43902 4.03508 4.47867 5.06350 5.15293 5.15829 5.18701 5.21230 5.37661 5.41494 5.60994 5.63185 5.71200 5.77607 5.86336 5.91002 5.97156 6.15999 6.27304 6.35646 6.39629 6.59180 6.62969 6.78992 6.92636 7.17838 7.25484 7.34775 7.37947 7.42524 7.86462 8.15086 8.26889 8.60134 9.10010 9.65840 11.13360 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.006992 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.583816 B = 4003.600037 C = 4958.918428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C 0.083 3.917 4 N -0.517 5.517 5 C 0.193 3.807 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.086 3.914 15 C -0.042 4.042 16 C -0.090 4.090 17 C -0.128 4.128 18 C -0.110 4.110 19 C -0.143 4.143 20 C -0.065 4.065 21 S -0.071 6.071 22 C -0.164 4.164 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.027 0.973 28 H 0.035 0.965 29 H -0.012 1.012 30 H 0.260 0.740 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -14.624 0.724 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.140 4.140 3 C -0.044 4.044 4 N -0.241 5.241 5 C 0.068 3.932 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.042 4.042 15 C -0.048 4.048 16 C -0.110 4.110 17 C -0.148 4.148 18 C -0.130 4.130 19 C -0.167 4.167 20 C -0.178 4.178 21 S 0.173 5.827 22 C -0.333 4.333 23 H 0.112 0.888 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.006 0.994 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.322 -14.607 0.202 14.668 hybrid contribution 0.556 0.918 1.057 1.506 sum 1.878 -13.689 1.259 13.874 Atomic orbital electron populations 1.23616 0.95943 1.00927 1.03668 1.22934 0.95807 0.98310 0.96970 1.21199 0.96085 0.95753 0.91403 1.62092 1.12247 1.13563 1.36202 1.19772 0.96861 0.81270 0.95249 1.21124 0.95459 0.94693 1.42853 0.91866 1.24955 0.95886 0.97687 0.95988 1.69945 1.22886 1.12108 1.48977 0.86613 0.82966 0.78750 0.79399 1.20225 1.21448 1.20310 1.21041 0.92971 0.98009 0.92179 1.19463 0.94290 0.94739 0.96353 1.21034 0.94887 0.98082 0.96992 1.21054 1.00416 0.98680 0.94687 1.20891 0.95811 0.97135 0.99113 1.21025 0.97207 1.02277 0.96151 1.21554 0.97992 1.00901 0.97398 1.85818 1.25647 1.45661 1.25599 1.23743 1.05326 1.02328 1.01869 0.88826 0.89497 0.88259 0.88958 0.95541 0.94721 0.99415 0.93008 0.94598 0.90856 0.85841 0.86289 0.86469 0.86516 0.90667 0.90125 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.16 14.32 29.01 0.42 -2.75 16 2 C -0.12 -2.04 8.87 -36.03 -0.32 -2.36 16 3 C 0.08 1.64 5.24 -4.97 -0.03 1.61 16 4 N -0.52 -11.14 4.14 -238.96 -0.99 -12.13 16 5 C 0.19 5.03 4.55 -4.98 -0.02 5.01 16 6 C -0.50 -14.20 8.23 -34.44 -0.28 -14.49 16 7 H 0.06 1.79 7.31 -52.49 -0.38 1.40 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 10 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.09 1.61 4.23 -4.98 -0.02 1.59 16 15 C -0.04 -0.77 4.80 -104.41 -0.50 -1.28 16 16 C -0.09 -1.55 8.95 -39.62 -0.35 -1.91 16 17 C -0.13 -1.95 10.04 -39.53 -0.40 -2.35 16 18 C -0.11 -1.58 10.04 -39.61 -0.40 -1.98 16 19 C -0.14 -2.16 9.36 -39.37 -0.37 -2.53 16 20 C -0.07 -1.12 6.11 -39.04 -0.24 -1.36 16 21 S -0.07 -1.10 19.96 -107.50 -2.15 -3.24 16 22 C -0.16 -1.86 9.15 101.05 0.92 -0.93 16 23 H 0.09 1.49 7.84 -52.49 -0.41 1.08 16 24 H 0.09 1.16 8.06 -52.48 -0.42 0.74 16 25 H 0.10 1.57 6.75 -52.48 -0.35 1.22 16 26 H 0.09 2.01 6.23 -51.93 -0.32 1.69 16 27 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 28 H 0.03 0.97 6.81 -51.93 -0.35 0.62 16 29 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.04 0.66 7.82 -51.93 -0.41 0.26 16 32 H 0.07 1.25 6.18 -51.93 -0.32 0.93 16 33 H 0.12 2.07 8.00 -52.49 -0.42 1.65 16 34 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.49 5.88 -52.48 -0.31 1.18 16 37 H 0.07 0.74 7.74 -51.93 -0.40 0.34 16 38 H 0.08 0.92 7.76 -51.92 -0.40 0.52 16 39 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -30.57 332.68 -9.84 -40.41 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.75 Total: 1.31 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.69 Total: -22.22 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.25 Total: -38.26 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.15 Total: -3.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.57 -9.84 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428857490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.096 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds