Wall clock time and date at job start Mon Mar 30 2020 02:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 119.99974 * 2 1 4 4 N 1.46907 * 109.47260 * 124.53454 * 3 2 1 5 5 C 1.46899 * 110.99905 * 199.67420 * 4 3 2 6 6 C 1.50703 * 109.47102 * 66.04815 * 5 4 3 7 7 H 1.07999 * 119.99798 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99883 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00189 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00060 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47065 * 59.99644 * 10 8 6 12 12 H 1.48503 * 109.47251 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47196 * 299.99849 * 10 8 6 14 14 C 1.46894 * 110.99863 * 75.71737 * 4 3 2 15 15 C 1.50704 * 109.47218 * 198.64617 * 14 4 3 16 16 C 1.38104 * 120.03712 * 255.07193 * 15 14 4 17 17 C 1.38280 * 120.07960 * 179.97438 * 16 15 14 18 18 C 1.38332 * 120.16204 * 0.04142 * 17 16 15 19 19 C 1.38056 * 120.07524 * 359.97438 * 18 17 16 20 20 C 1.38950 * 120.04069 * 74.79057 * 15 14 4 21 21 S 1.76198 * 120.07980 * 0.02562 * 20 15 14 22 22 C 1.81402 * 102.99675 * 179.97438 * 21 20 15 23 23 H 1.07998 * 119.99934 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.00111 * 179.97438 * 1 2 3 25 25 H 1.08008 * 119.99835 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47749 * 4.53345 * 3 2 1 27 27 H 1.09006 * 109.46932 * 244.52977 * 3 2 1 28 28 H 1.09000 * 109.46653 * 186.04316 * 5 4 3 29 29 H 1.08999 * 109.47002 * 306.04365 * 5 4 3 30 30 H 0.96993 * 120.00214 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.47510 * 78.64820 * 14 4 3 32 32 H 1.08999 * 109.47841 * 318.64521 * 14 4 3 33 33 H 1.07996 * 119.96638 * 359.97438 * 16 15 14 34 34 H 1.07998 * 119.92369 * 180.02562 * 17 16 15 35 35 H 1.07993 * 119.96225 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.04112 * 180.02562 * 19 18 17 37 37 H 1.08989 * 109.47498 * 299.99714 * 22 21 20 38 38 H 1.08999 * 109.47064 * 60.00835 * 22 21 20 39 39 H 1.09001 * 109.46713 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9883 1.3366 1.1410 5 6 3.3877 2.7145 1.4569 6 6 2.1887 3.4854 1.9460 7 1 1.2262 3.0004 2.0147 8 6 2.3204 4.8102 2.3046 9 7 3.4924 5.4009 2.2204 10 14 0.8341 5.7661 2.9100 11 1 0.2911 5.1164 4.1299 12 1 1.2376 7.1593 3.2284 13 1 -0.2083 5.7826 1.8524 14 6 4.1637 0.4923 0.8893 15 6 4.8446 0.1766 2.1962 16 6 6.0238 0.8119 2.5324 17 6 6.6491 0.5233 3.7316 18 6 6.0968 -0.4028 4.5981 19 6 4.9184 -1.0420 4.2684 20 6 4.2837 -0.7497 3.0668 21 16 2.7758 -1.5577 2.6451 22 6 2.4786 -2.6375 4.0721 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3581 2.1320 0.0812 27 1 2.6279 1.3987 -0.9278 28 1 4.1529 2.7020 2.2331 29 1 3.7861 3.1916 0.5616 30 1 3.5851 6.3328 2.4730 31 1 4.8581 1.0213 0.2364 32 1 3.8493 -0.4349 0.4102 33 1 6.4583 1.5350 1.8581 34 1 7.5709 1.0219 3.9922 35 1 6.5880 -0.6260 5.5336 36 1 4.4875 -1.7646 4.9456 37 1 3.3104 -3.3333 4.1807 38 1 2.3911 -2.0318 4.9740 39 1 1.5551 -3.1959 3.9189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428857490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:37 Heat of formation + Delta-G solvation = 34.035729 kcal Electronic energy + Delta-G solvation = -19445.436292 eV Core-core repulsion = 16672.046721 eV Total energy + Delta-G solvation = -2773.389571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28949 -38.37566 -34.93998 -34.27444 -32.34953 -32.10205 -29.58208 -29.20319 -27.25847 -25.64392 -23.74390 -22.93433 -21.78124 -20.42441 -18.52238 -18.35690 -17.08111 -16.83950 -16.38420 -16.19931 -15.77555 -15.39152 -15.21673 -14.81888 -14.56624 -14.48044 -14.04291 -13.79066 -13.52297 -13.34818 -13.25815 -13.05907 -12.78190 -12.58083 -12.51425 -12.26340 -12.00568 -11.96273 -11.56171 -11.25562 -10.84574 -10.59306 -10.52464 -10.12137 -9.70972 -8.94037 -8.18665 -8.09587 -6.26350 0.36285 0.45384 0.79205 1.39188 1.42358 1.49964 1.56459 1.75584 2.40779 2.78152 3.14600 3.53677 3.91609 3.93710 4.16126 4.19769 4.32760 4.34699 4.36354 4.46831 4.48304 4.57552 4.63268 4.70864 4.90116 4.94762 4.96328 5.09395 5.11642 5.25829 5.31671 5.39052 5.55932 5.63996 5.69398 5.85230 6.05178 6.09029 6.10224 6.40490 6.64976 6.89395 7.42130 8.92922 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.006992 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.583816 B = 4003.600037 C = 4958.918428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.132 4.132 3 C 0.084 3.916 4 N -0.517 5.517 5 C 0.214 3.786 6 C -0.517 4.517 7 H 0.060 0.940 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.093 3.907 15 C -0.072 4.072 16 C -0.113 4.113 17 C -0.134 4.134 18 C -0.105 4.105 19 C -0.146 4.146 20 C -0.078 4.078 21 S -0.111 6.111 22 C -0.151 4.151 23 H 0.086 0.914 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.066 0.934 27 H 0.028 0.972 28 H 0.008 0.992 29 H -0.044 1.044 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -16.418 2.344 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.150 4.150 3 C -0.043 4.043 4 N -0.240 5.240 5 C 0.088 3.912 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.035 4.035 15 C -0.079 4.079 16 C -0.133 4.133 17 C -0.155 4.155 18 C -0.125 4.125 19 C -0.170 4.170 20 C -0.192 4.192 21 S 0.133 5.867 22 C -0.319 4.319 23 H 0.105 0.895 24 H 0.135 0.865 25 H 0.131 0.869 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.026 0.974 29 H -0.027 1.027 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.129 -16.422 1.806 16.521 hybrid contribution 0.940 1.400 0.576 1.782 sum 1.068 -15.022 2.381 15.247 Atomic orbital electron populations 1.23820 0.95451 1.02026 1.01184 1.22736 0.96140 0.96980 0.99166 1.21169 0.95485 0.96857 0.90824 1.62030 1.13556 1.10990 1.37455 1.19341 0.95381 0.83630 0.92871 1.21395 0.95820 0.95366 1.42933 0.92224 1.25834 0.98867 0.98702 0.96015 1.70077 1.25028 1.12486 1.49792 0.85539 0.79382 0.77277 0.79064 1.19614 1.20806 1.19182 1.21014 0.91738 0.97731 0.93048 1.19520 0.95150 0.96436 0.96754 1.21156 0.95444 0.98493 0.98192 1.21372 1.01164 0.99002 0.93932 1.21341 0.95387 0.95789 0.99956 1.21428 0.97293 1.02538 0.95735 1.21760 0.98675 1.00810 0.97915 1.85798 1.25250 1.46899 1.28787 1.23811 1.07074 1.01611 0.99402 0.89520 0.86486 0.86949 0.91573 0.95441 0.97375 1.02658 0.92843 0.95601 0.89276 0.86903 0.84066 0.82865 0.83776 0.88765 0.89978 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.49 14.32 67.78 0.97 -4.52 16 2 C -0.13 -4.33 8.87 25.65 0.23 -4.10 16 3 C 0.08 3.41 5.24 85.55 0.45 3.86 16 4 N -0.52 -23.14 4.14 -909.93 -3.77 -26.90 16 5 C 0.21 11.74 4.55 85.56 0.39 12.13 16 6 C -0.52 -30.09 8.23 25.60 0.21 -29.88 16 7 H 0.06 3.44 7.31 -2.91 -0.02 3.42 16 8 C 0.00 0.21 5.46 84.65 0.46 0.68 16 9 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 10 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.09 3.61 4.23 85.56 0.36 3.97 16 15 C -0.07 -2.73 4.80 -19.72 -0.09 -2.82 16 16 C -0.11 -4.06 8.95 22.25 0.20 -3.86 16 17 C -0.13 -4.02 10.04 22.30 0.22 -3.79 16 18 C -0.11 -2.78 10.04 22.25 0.22 -2.56 16 19 C -0.15 -4.12 9.36 22.41 0.21 -3.91 16 20 C -0.08 -2.63 6.11 22.62 0.14 -2.50 16 21 S -0.11 -3.28 19.96 -56.49 -1.13 -4.40 16 22 C -0.15 -2.92 9.15 113.37 1.04 -1.88 16 23 H 0.09 2.67 7.84 -2.91 -0.02 2.65 16 24 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 25 H 0.11 3.43 6.75 -2.91 -0.02 3.41 16 26 H 0.07 3.00 6.23 -2.39 -0.01 2.98 16 27 H 0.03 1.09 8.00 -2.38 -0.02 1.07 16 28 H 0.01 0.49 6.81 -2.39 -0.02 0.47 16 29 H -0.04 -2.64 8.12 -2.39 -0.02 -2.66 16 30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 31 H 0.03 1.03 7.82 -2.38 -0.02 1.01 16 32 H 0.09 3.12 6.18 -2.39 -0.01 3.10 16 33 H 0.11 4.11 8.00 -2.91 -0.02 4.09 16 34 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 36 H 0.14 3.17 5.88 -2.91 -0.02 3.15 16 37 H 0.09 1.49 7.74 -2.40 -0.02 1.47 16 38 H 0.08 1.60 7.76 -2.39 -0.02 1.58 16 39 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -67.75 332.68 3.44 -64.31 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 1.02 Total: 15.67 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 5.01 Total: -39.19 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.48 Total: -83.85 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -1.13 Total: -4.40 kcal Total: -67.75 3.44 -64.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428857490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.344 kcal (2) G-P(sol) polarization free energy of solvation -67.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds