Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76202 * 103.00321 * 2 1 4 4 C 1.38969 * 120.08109 * 180.02562 * 3 2 1 5 5 C 1.38086 * 119.91818 * 180.02562 * 4 3 2 6 6 C 1.38302 * 120.08084 * 0.25903 * 5 4 3 7 7 C 1.50698 * 119.92220 * 179.72282 * 6 5 4 8 8 N 1.46899 * 109.47247 * 89.99593 * 7 6 5 9 9 C 1.46895 * 111.00173 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47401 * 174.70104 * 9 8 7 11 11 C 1.50701 * 115.54506 * 65.16671 * 10 9 8 12 12 H 1.07998 * 119.99686 * 264.96181 * 11 10 9 13 13 C 1.37880 * 119.99541 * 84.96872 * 11 10 9 14 14 N 1.31505 * 120.00398 * 353.05708 * 13 11 10 15 15 Si 1.86803 * 119.99518 * 173.05913 * 13 11 10 16 16 H 1.48500 * 109.47219 * 89.99877 * 15 13 11 17 17 H 1.48499 * 109.47140 * 209.99646 * 15 13 11 18 18 H 1.48501 * 109.47139 * 329.99907 * 15 13 11 19 19 C 1.52998 * 117.49607 * 279.50019 * 10 9 8 20 20 C 1.52997 * 117.49779 * 210.83976 * 10 9 8 21 21 C 1.38304 * 120.15936 * 359.48154 * 6 5 4 22 22 C 1.38088 * 120.08052 * 0.51669 * 21 6 5 23 23 H 1.09001 * 109.47116 * 300.00022 * 1 2 3 24 24 H 1.08997 * 109.47470 * 60.00116 * 1 2 3 25 25 H 1.08996 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.04064 * 0.02562 * 4 3 2 27 27 H 1.07995 * 119.95843 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.46825 * 209.99842 * 7 6 5 29 29 H 1.08997 * 109.47052 * 329.99743 * 7 6 5 30 30 H 1.00900 * 111.00369 * 56.04743 * 8 7 6 31 31 H 1.09004 * 109.47394 * 294.70366 * 9 8 7 32 32 H 1.09006 * 109.47163 * 54.69980 * 9 8 7 33 33 H 0.97001 * 120.00154 * 185.04800 * 14 13 11 34 34 H 1.08996 * 117.50150 * 359.97438 * 19 10 9 35 35 H 1.09004 * 117.49368 * 145.02234 * 19 10 9 36 36 H 1.09003 * 117.49586 * 214.98065 * 20 10 9 37 37 H 1.08998 * 117.49883 * 359.97402 * 20 10 9 38 38 H 1.08000 * 119.96475 * 180.25403 * 21 6 5 39 39 H 1.08002 * 120.03948 * 179.71523 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5388 2.1249 -0.0005 5 6 3.8457 3.4713 0.0000 6 6 2.8330 4.4131 0.0065 7 6 3.1720 5.8814 0.0134 8 7 3.2799 6.3656 -1.3693 9 6 3.6107 7.7964 -1.4018 10 6 3.8442 8.2332 -2.8495 11 6 2.6399 8.1609 -3.7524 12 1 2.4771 7.2876 -4.3666 13 6 1.7459 9.2098 -3.7945 14 7 1.8669 10.2112 -2.9507 15 14 0.3627 9.2082 -5.0500 16 1 -0.8304 8.5398 -4.4712 17 1 0.0199 10.6074 -5.4106 18 1 0.7989 8.4762 -6.2662 19 6 5.2101 7.9283 -3.4677 20 6 4.8430 9.3664 -3.0931 21 6 1.5098 4.0106 0.0016 22 6 1.1953 2.6660 0.0011 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 4.3302 1.3901 -0.0014 27 1 4.8778 3.7892 0.0000 28 1 2.3874 6.4330 0.5313 29 1 4.1217 6.0326 0.5264 30 1 2.4333 6.1781 -1.8853 31 1 2.7863 8.3698 -0.9778 32 1 4.5144 7.9738 -0.8186 33 1 1.1970 10.9124 -2.9309 34 1 5.9425 7.4169 -2.8431 35 1 5.2376 7.6759 -4.5278 36 1 4.6291 10.0594 -3.9068 37 1 5.3333 9.8010 -2.2221 38 1 0.7214 4.7488 0.0026 39 1 0.1618 2.3525 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430074267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = 29.110964 kcal Electronic energy + Delta-G solvation = -18513.921787 eV Core-core repulsion = 15740.318663 eV Total energy + Delta-G solvation = -2773.603124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23358 -38.67703 -36.02111 -33.96238 -32.37909 -32.02862 -29.73115 -28.02895 -27.11367 -24.66715 -23.56331 -22.82912 -22.18620 -20.94005 -18.68756 -17.95187 -16.99084 -16.71751 -16.53449 -15.79082 -15.71644 -15.56929 -15.36109 -14.76236 -14.67297 -14.46969 -14.26907 -13.67709 -13.61661 -13.25243 -13.06552 -12.99995 -12.86750 -12.76529 -12.30800 -12.25561 -12.00891 -11.91732 -11.33507 -11.17706 -10.70632 -10.59984 -10.38898 -9.91952 -9.91325 -9.11428 -8.32497 -8.07779 -6.18551 0.20633 0.43606 0.60271 1.39525 1.43410 1.48591 1.52160 2.43205 2.67708 3.20202 3.42873 3.79537 3.85905 3.99174 4.00768 4.25703 4.27437 4.33003 4.40480 4.45995 4.62732 4.66524 4.69755 4.78168 4.84951 4.88782 5.00857 5.05458 5.08742 5.10634 5.28041 5.30355 5.35296 5.68282 5.68889 5.71395 5.81499 5.94945 6.35320 6.49804 6.62078 6.90050 7.49372 8.99479 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.003848 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.992987 B = 7274.121925 C = 8098.523077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.146 6.146 3 C -0.096 4.096 4 C -0.109 4.109 5 C -0.085 4.085 6 C -0.086 4.086 7 C 0.099 3.901 8 N -0.673 5.673 9 C 0.120 3.880 10 C 0.027 3.973 11 C -0.503 4.503 12 H 0.050 0.950 13 C 0.028 3.972 14 N -0.907 5.907 15 Si 0.944 3.056 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.272 1.272 19 C -0.179 4.179 20 C -0.168 4.168 21 C -0.104 4.104 22 C -0.136 4.136 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.127 0.873 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.029 0.971 29 H 0.082 0.918 30 H 0.339 0.661 31 H 0.006 0.994 32 H 0.050 0.950 33 H 0.258 0.742 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 -17.202 8.633 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.095 5.905 3 C -0.209 4.209 4 C -0.132 4.132 5 C -0.106 4.106 6 C -0.089 4.089 7 C -0.030 4.030 8 N -0.304 5.304 9 C -0.009 4.009 10 C 0.027 3.973 11 C -0.541 4.541 12 H 0.068 0.932 13 C -0.172 4.172 14 N -0.545 5.545 15 Si 0.770 3.230 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.216 4.216 20 C -0.206 4.206 21 C -0.125 4.125 22 C -0.159 4.159 23 H 0.111 0.889 24 H 0.107 0.893 25 H 0.145 0.855 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.145 0.855 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.486 -18.249 8.577 20.170 hybrid contribution -2.415 2.106 -0.464 3.238 sum -2.901 -16.143 8.112 18.298 Atomic orbital electron populations 1.23762 0.91947 1.08467 1.06357 1.85409 1.09665 1.02581 1.92824 1.21865 0.96888 0.97042 1.05094 1.20938 0.94727 0.96192 1.01368 1.21114 0.99758 0.91926 0.97753 1.19910 0.93604 0.95160 1.00185 1.20889 1.00800 0.90740 0.90576 1.60495 1.41396 1.16572 1.11889 1.21191 0.97187 0.86643 0.95911 1.18874 0.88385 0.97457 0.92602 1.20675 1.07933 1.01958 1.23575 0.93202 1.25611 0.99755 0.94877 0.96968 1.70086 1.35169 1.12050 1.37197 0.85773 0.79955 0.76988 0.80243 1.20086 1.21289 1.19665 1.22844 1.00912 0.98059 0.99834 1.22462 1.05941 0.91080 1.01101 1.21136 0.96201 0.95970 0.99148 1.21298 0.99028 0.92612 1.03010 0.88913 0.89328 0.85499 0.84359 0.84484 0.95258 0.89930 0.84341 0.97596 0.93193 0.93252 0.89530 0.91207 0.92630 0.90960 0.85545 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.15 113.37 1.04 -0.67 16 2 S -0.15 -2.87 22.56 -56.49 -1.27 -4.14 16 3 C -0.10 -2.30 6.11 22.62 0.14 -2.16 16 4 C -0.11 -2.65 9.79 22.41 0.22 -2.43 16 5 C -0.09 -2.22 9.69 22.25 0.22 -2.01 16 6 C -0.09 -2.43 5.40 -19.83 -0.11 -2.54 16 7 C 0.10 3.08 5.80 85.56 0.50 3.58 16 8 N -0.67 -25.89 6.46 -517.94 -3.34 -29.24 16 9 C 0.12 5.27 5.54 86.31 0.48 5.75 16 10 C 0.03 1.34 1.56 -52.93 -0.08 1.26 16 11 C -0.50 -27.02 8.33 25.60 0.21 -26.80 16 12 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 13 C 0.03 1.52 5.39 84.66 0.46 1.97 16 14 N -0.91 -51.11 12.95 21.45 0.28 -50.83 16 15 Si 0.94 42.94 29.55 68.60 2.03 44.97 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 C -0.18 -7.86 9.96 30.62 0.30 -7.55 16 20 C -0.17 -7.95 9.46 30.62 0.29 -7.66 16 21 C -0.10 -2.77 9.69 22.25 0.22 -2.56 16 22 C -0.14 -3.21 9.36 22.41 0.21 -3.00 16 23 H 0.09 1.02 7.75 -2.39 -0.02 1.00 16 24 H 0.09 1.08 7.75 -2.39 -0.02 1.06 16 25 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 27 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.03 0.93 8.09 -2.39 -0.02 0.91 16 29 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 30 H 0.34 14.05 8.29 -89.69 -0.74 13.31 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 2.05 8.08 -2.38 -0.02 2.03 16 33 H 0.26 13.98 8.32 -92.71 -0.77 13.21 16 34 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 36 H 0.05 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.14 2.62 5.88 -2.91 -0.02 2.60 16 Total: -1.00 -59.17 341.15 2.05 -57.11 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.28 Total: 26.95 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 4.08 Total: -44.83 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -3.07 Total: -80.07 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -1.27 Total: -4.14 kcal Total: -59.17 2.05 -57.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430074267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.223 kcal (2) G-P(sol) polarization free energy of solvation -59.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds