Wall clock time and date at job start Mon Mar 30 2020 02:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99972 * 2 1 4 4 C 1.50694 * 109.47115 * 84.99899 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 S 1.65601 * 119.99689 * 179.97438 * 2 1 3 13 13 O 1.42095 * 106.40327 * 23.54214 * 12 2 1 14 14 O 1.42104 * 106.39941 * 156.46006 * 12 2 1 15 15 N 1.65595 * 107.21482 * 269.99791 * 12 2 1 16 16 C 1.46504 * 120.00135 * 65.00673 * 15 12 2 17 17 C 1.52994 * 109.47216 * 164.99623 * 16 15 12 18 18 H 1.09003 * 109.87820 * 295.41967 * 17 16 15 19 19 C 1.54320 * 109.88818 * 174.22601 * 17 16 15 20 20 C 1.55145 * 103.01686 * 218.30912 * 19 17 16 21 21 C 1.54907 * 101.65477 * 35.65100 * 20 19 17 22 22 N 1.47443 * 109.89202 * 56.45228 * 17 16 15 23 23 H 1.09004 * 109.47130 * 89.99941 * 1 2 3 24 24 H 1.09000 * 109.47503 * 209.99870 * 1 2 3 25 25 H 1.09000 * 109.47371 * 330.00386 * 1 2 3 26 26 H 1.09007 * 109.47078 * 324.99538 * 3 2 1 27 27 H 1.09003 * 109.46733 * 205.00261 * 3 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00456 * 245.00056 * 15 12 2 30 30 H 1.09000 * 109.47213 * 284.99902 * 16 15 12 31 31 H 1.09000 * 109.46892 * 44.99165 * 16 15 12 32 32 H 1.08999 * 110.70602 * 336.68507 * 19 17 16 33 33 H 1.09000 * 110.70988 * 99.92840 * 19 17 16 34 34 H 1.08995 * 110.99006 * 277.55991 * 20 19 17 35 35 H 1.09005 * 111.02073 * 153.75532 * 20 19 17 36 36 H 1.08994 * 110.37626 * 204.09731 * 21 20 19 37 37 H 1.08998 * 110.46776 * 81.80350 * 21 20 19 38 38 H 1.00895 * 110.99934 * 240.68550 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4153 5 1 1.9282 1.1939 2.2331 6 6 2.9997 2.9509 1.6663 7 7 3.5025 3.6475 0.6704 8 14 3.1775 3.5672 3.4207 9 1 3.9201 4.8533 3.4207 10 1 1.8309 3.7727 4.0120 11 1 3.9233 2.5655 4.2241 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8579 1.5826 16 6 1.3946 -2.1767 2.4412 17 6 1.8874 -2.8832 3.7055 18 1 2.3321 -3.8435 3.4441 19 6 0.7109 -3.0940 4.6816 20 6 1.3565 -2.8347 6.0683 21 6 2.3632 -1.7045 5.7384 22 7 2.8819 -2.0411 4.3954 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6501 2.0043 -0.5896 27 1 3.1858 1.1176 -0.4344 28 1 3.9653 4.4815 0.8470 29 1 3.4387 -1.8951 1.9409 30 1 0.8792 -1.2566 2.7165 31 1 0.7079 -2.8307 1.9037 32 1 -0.0851 -2.3753 4.4867 33 1 0.3344 -4.1149 4.6167 34 1 1.8725 -3.7236 6.4311 35 1 0.6121 -2.4963 6.7891 36 1 3.1741 -1.6940 6.4667 37 1 1.8589 -0.7385 5.7191 38 1 3.7722 -2.5116 4.4591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440354824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:32 Heat of formation + Delta-G solvation = -77.490369 kcal Electronic energy + Delta-G solvation = -20964.670196 eV Core-core repulsion = 17775.595228 eV Total energy + Delta-G solvation = -3189.074968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.85127 -36.52548 -35.39326 -35.10998 -34.38276 -32.38610 -30.16682 -29.35987 -27.70355 -25.00469 -24.59789 -22.19642 -21.29912 -20.24756 -18.62341 -17.16604 -17.05053 -16.62406 -16.25949 -15.84730 -15.18993 -14.78205 -14.20931 -13.78138 -13.57571 -13.35278 -13.18562 -12.73112 -12.39807 -12.09415 -12.07611 -11.91521 -11.61094 -11.52056 -11.38406 -11.20532 -11.08530 -11.02996 -10.90860 -10.76853 -10.63225 -10.42059 -10.01547 -9.68385 -8.98193 -8.44752 -8.39845 -7.95176 -6.01702 -4.07032 1.44298 3.33432 3.37867 3.40796 3.62502 4.11586 4.32079 4.45741 4.52839 4.61497 4.89159 5.13849 5.18025 5.28867 5.32638 5.37037 5.53456 5.62494 5.64021 5.71478 5.79757 5.87748 6.06184 6.12798 6.19974 6.26971 6.39529 6.64351 6.88230 7.34830 7.38543 7.50191 7.62733 7.77495 7.96256 8.25284 8.98390 9.58526 11.06532 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.008785 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.427594 B = 3186.539458 C = 4774.645805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.997 5.997 3 C 0.246 3.754 4 C -0.533 4.533 5 H 0.065 0.935 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.289 1.289 10 H -0.279 1.279 11 H -0.274 1.274 12 S 2.790 3.210 13 O -1.006 7.006 14 O -0.982 6.982 15 N -1.115 6.115 16 C 0.139 3.861 17 C 0.073 3.927 18 H 0.067 0.933 19 C -0.135 4.135 20 C -0.154 4.154 21 C 0.049 3.951 22 N -0.674 5.674 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.263 0.737 29 H 0.415 0.585 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 -12.467 8.999 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.839 5.839 3 C 0.123 3.877 4 C -0.572 4.572 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.215 1.215 10 H -0.205 1.205 11 H -0.199 1.199 12 S 2.798 3.202 13 O -0.990 6.990 14 O -0.966 6.966 15 N -0.874 5.874 16 C 0.011 3.989 17 C -0.039 4.039 18 H 0.085 0.915 19 C -0.174 4.174 20 C -0.193 4.193 21 C -0.080 4.080 22 N -0.303 5.303 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.249 0.751 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.345 -12.145 7.766 15.375 hybrid contribution 0.478 -0.053 2.053 2.108 sum -4.868 -12.198 9.819 16.398 Atomic orbital electron populations 1.21221 0.80394 1.01901 1.00543 1.57575 1.14001 1.23500 1.88810 1.19197 0.92121 0.78814 0.97527 1.21551 1.36176 1.06541 0.92963 0.91712 1.24959 0.95299 0.96623 0.97171 1.69938 1.37155 1.15228 1.30953 0.86582 0.78076 0.77899 0.84954 1.21520 1.20460 1.19942 1.01540 0.72860 0.72746 0.73104 1.93524 1.67721 1.60237 1.77477 1.93581 1.40975 1.85197 1.76880 1.55698 1.14831 1.85909 1.30964 1.21193 0.87938 0.99396 0.90371 1.22343 0.92625 0.94756 0.94171 0.91507 1.22807 0.98177 1.02228 0.94206 1.23149 0.99475 0.99308 0.97328 1.22876 0.97215 0.98575 0.89310 1.61400 1.05081 1.46157 1.17631 0.93859 0.93077 0.90899 0.94610 0.93181 0.92702 0.75090 0.91570 0.91249 0.90322 0.90873 0.91676 0.90753 0.91640 0.90226 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.86 10.31 59.85 0.62 2.48 16 2 N -1.00 -21.16 3.23 -123.05 -0.40 -21.56 16 3 C 0.25 6.29 5.41 -5.20 -0.03 6.26 16 4 C -0.53 -14.35 9.38 -34.44 -0.32 -14.67 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 S 2.79 56.76 6.10 -107.50 -0.66 56.11 16 13 O -1.01 -20.92 16.68 -57.17 -0.95 -21.88 16 14 O -0.98 -23.51 16.69 -57.17 -0.95 -24.46 16 15 N -1.11 -18.83 5.98 -10.61 -0.06 -18.90 16 16 C 0.14 1.98 5.85 -4.04 -0.02 1.95 16 17 C 0.07 0.84 3.56 -66.73 -0.24 0.60 16 18 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 19 C -0.13 -1.29 6.47 -24.91 -0.16 -1.45 16 20 C -0.15 -1.35 7.08 -24.59 -0.17 -1.53 16 21 C 0.05 0.54 7.57 -2.30 -0.02 0.52 16 22 N -0.67 -8.33 6.38 -103.82 -0.66 -9.00 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 25 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 26 H 0.04 0.95 8.11 -51.92 -0.42 0.53 16 27 H 0.05 1.42 6.92 -51.93 -0.36 1.06 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.42 6.74 8.16 -34.47 -0.28 6.46 16 30 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.07 0.92 7.75 -51.93 -0.40 0.52 16 32 H 0.08 0.77 7.79 -51.93 -0.40 0.37 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.34 3.62 8.91 -39.29 -0.35 3.27 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -33.23 324.97 -9.48 -42.72 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.96 Total: 5.44 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.45 Total: -4.20 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -0.39 Total: -74.94 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -1.91 Total: -46.34 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 56.76 SS G_CDS: -0.66 Total: 56.11 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.23 -9.48 -42.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440354824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.775 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds