Wall clock time and date at job start Mon Mar 30 2020 02:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99972 * 2 1 4 4 C 1.50694 * 109.47115 * 84.99899 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 S 1.65601 * 119.99689 * 179.97438 * 2 1 3 13 13 O 1.42095 * 106.40327 * 23.54214 * 12 2 1 14 14 O 1.42104 * 106.39941 * 156.46006 * 12 2 1 15 15 N 1.65595 * 107.21482 * 269.99791 * 12 2 1 16 16 C 1.46504 * 120.00135 * 65.00673 * 15 12 2 17 17 C 1.52994 * 109.47216 * 164.99623 * 16 15 12 18 18 H 1.09003 * 109.87820 * 295.41967 * 17 16 15 19 19 C 1.54320 * 109.88818 * 174.22601 * 17 16 15 20 20 C 1.55145 * 103.01686 * 218.30912 * 19 17 16 21 21 C 1.54907 * 101.65477 * 35.65100 * 20 19 17 22 22 N 1.47443 * 109.89202 * 56.45228 * 17 16 15 23 23 H 1.09004 * 109.47130 * 89.99941 * 1 2 3 24 24 H 1.09000 * 109.47503 * 209.99870 * 1 2 3 25 25 H 1.09000 * 109.47371 * 330.00386 * 1 2 3 26 26 H 1.09007 * 109.47078 * 324.99538 * 3 2 1 27 27 H 1.09003 * 109.46733 * 205.00261 * 3 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00456 * 245.00056 * 15 12 2 30 30 H 1.09000 * 109.47213 * 284.99902 * 16 15 12 31 31 H 1.09000 * 109.46892 * 44.99165 * 16 15 12 32 32 H 1.08999 * 110.70602 * 336.68507 * 19 17 16 33 33 H 1.09000 * 110.70988 * 99.92840 * 19 17 16 34 34 H 1.08995 * 110.99006 * 277.55991 * 20 19 17 35 35 H 1.09005 * 111.02073 * 153.75532 * 20 19 17 36 36 H 1.08994 * 110.37626 * 204.09731 * 21 20 19 37 37 H 1.08998 * 110.46776 * 81.80350 * 21 20 19 38 38 H 1.00895 * 110.99934 * 240.68550 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4153 5 1 1.9282 1.1939 2.2331 6 6 2.9997 2.9509 1.6663 7 7 3.5025 3.6475 0.6704 8 14 3.1775 3.5672 3.4207 9 1 3.9201 4.8533 3.4207 10 1 1.8309 3.7727 4.0120 11 1 3.9233 2.5655 4.2241 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4067 -0.5434 14 8 3.5759 -1.1571 -0.5439 15 7 2.5380 -1.8579 1.5826 16 6 1.3946 -2.1767 2.4412 17 6 1.8874 -2.8832 3.7055 18 1 2.3321 -3.8435 3.4441 19 6 0.7109 -3.0940 4.6816 20 6 1.3565 -2.8347 6.0683 21 6 2.3632 -1.7045 5.7384 22 7 2.8819 -2.0411 4.3954 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6501 2.0043 -0.5896 27 1 3.1858 1.1176 -0.4344 28 1 3.9653 4.4815 0.8470 29 1 3.4387 -1.8951 1.9409 30 1 0.8792 -1.2566 2.7165 31 1 0.7079 -2.8307 1.9037 32 1 -0.0851 -2.3753 4.4867 33 1 0.3344 -4.1149 4.6167 34 1 1.8725 -3.7236 6.4311 35 1 0.6121 -2.4963 6.7891 36 1 3.1741 -1.6940 6.4667 37 1 1.8589 -0.7385 5.7191 38 1 3.7722 -2.5116 4.4591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440354824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:31 Heat of formation + Delta-G solvation = -104.589616 kcal Electronic energy + Delta-G solvation = -20965.845307 eV Core-core repulsion = 17775.595228 eV Total energy + Delta-G solvation = -3190.250080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.72226 -38.24754 -37.17472 -36.85116 -35.62141 -34.44614 -30.98089 -30.34271 -29.62706 -26.74364 -25.66202 -24.15427 -22.07373 -21.20065 -20.19169 -18.75418 -18.50656 -18.08526 -17.94474 -17.37329 -16.63164 -16.09540 -15.76094 -15.08572 -14.96946 -14.75166 -14.36014 -13.99746 -13.94892 -13.70671 -13.38488 -13.31093 -13.18874 -12.99646 -12.95443 -12.87872 -12.47107 -12.38945 -12.34045 -11.96643 -11.95378 -11.74816 -11.69138 -11.57312 -10.55551 -10.31247 -9.73662 -9.34439 -8.13779 -6.26742 -0.18980 1.43845 1.47535 1.54623 2.06506 2.46132 2.69443 3.17811 3.28274 3.49043 3.75124 3.85380 4.09772 4.16457 4.27365 4.35319 4.57209 4.63276 4.72461 4.80302 4.86229 4.88753 5.00829 5.06405 5.08141 5.12164 5.18046 5.29396 5.41274 5.52471 5.77289 5.91418 6.01011 6.13790 6.31866 6.57265 6.85824 7.43139 8.94322 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.008785 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.427594 B = 3186.539458 C = 4774.645805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.003 6.003 3 C 0.260 3.740 4 C -0.535 4.535 5 H 0.072 0.928 6 C 0.007 3.993 7 N -0.932 5.932 8 Si 0.964 3.036 9 H -0.289 1.289 10 H -0.267 1.267 11 H -0.269 1.269 12 S 2.804 3.196 13 O -1.008 7.008 14 O -1.023 7.023 15 N -1.106 6.106 16 C 0.130 3.870 17 C 0.074 3.926 18 H 0.081 0.919 19 C -0.133 4.133 20 C -0.143 4.143 21 C 0.045 3.955 22 N -0.698 5.698 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.017 0.983 28 H 0.264 0.736 29 H 0.419 0.581 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 -13.778 11.172 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.845 5.845 3 C 0.136 3.864 4 C -0.575 4.575 5 H 0.090 0.910 6 C -0.192 4.192 7 N -0.572 5.572 8 Si 0.789 3.211 9 H -0.215 1.215 10 H -0.192 1.192 11 H -0.194 1.194 12 S 2.812 3.188 13 O -0.992 6.992 14 O -1.007 7.007 15 N -0.868 5.868 16 C 0.003 3.997 17 C -0.037 4.037 18 H 0.099 0.901 19 C -0.172 4.172 20 C -0.182 4.182 21 C -0.084 4.084 22 N -0.328 5.328 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.254 0.746 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.391 -13.478 9.940 17.925 hybrid contribution 0.763 0.306 1.349 1.580 sum -5.628 -13.172 11.289 18.238 Atomic orbital electron populations 1.21472 0.78194 1.03275 1.01866 1.57483 1.15544 1.22095 1.89342 1.18734 0.90782 0.80215 0.96681 1.21813 1.35620 1.06503 0.93515 0.91029 1.25840 0.95049 0.96979 1.01295 1.70073 1.38196 1.15745 1.33231 0.85517 0.78502 0.77195 0.79870 1.21482 1.19151 1.19361 1.00966 0.71781 0.72361 0.73696 1.93514 1.67601 1.59917 1.78137 1.93522 1.43055 1.85698 1.78427 1.55434 1.15971 1.85311 1.30084 1.21483 0.87167 0.99573 0.91439 1.22341 0.93468 0.94663 0.93239 0.90098 1.22821 0.97202 1.03295 0.93861 1.23091 0.99054 0.98909 0.97123 1.22872 0.98066 0.98396 0.89035 1.61313 1.05899 1.46937 1.18688 0.92626 0.90355 0.90876 0.96243 0.96544 0.92677 0.74617 0.92632 0.89977 0.90810 0.88901 0.90300 0.89775 0.90532 0.92384 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.30 10.31 127.77 1.32 4.62 16 2 N -1.00 -42.56 3.23 -543.21 -1.75 -44.31 16 3 C 0.26 13.62 5.41 85.63 0.46 14.08 16 4 C -0.54 -28.91 9.38 25.60 0.24 -28.67 16 5 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 6 C 0.01 0.40 5.46 84.66 0.46 0.86 16 7 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 8 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 9 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 S 2.80 113.37 6.10 -56.49 -0.34 113.02 16 13 O -1.01 -40.67 16.68 -128.00 -2.14 -42.80 16 14 O -1.02 -49.94 16.69 -128.00 -2.14 -52.08 16 15 N -1.11 -36.27 5.98 -187.49 -1.12 -37.39 16 16 C 0.13 3.47 5.85 86.38 0.51 3.97 16 17 C 0.07 1.54 3.56 45.26 0.16 1.70 16 18 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 19 C -0.13 -2.12 6.47 31.78 0.21 -1.92 16 20 C -0.14 -2.08 7.08 31.98 0.23 -1.86 16 21 C 0.05 0.90 7.57 86.77 0.66 1.55 16 22 N -0.70 -15.98 6.38 -482.37 -3.08 -19.06 16 23 H 0.06 1.73 8.14 -2.38 -0.02 1.72 16 24 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 25 H 0.07 2.46 8.07 -2.39 -0.02 2.45 16 26 H 0.02 1.07 8.11 -2.38 -0.02 1.05 16 27 H 0.02 0.97 6.92 -2.39 -0.02 0.96 16 28 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.42 13.30 8.16 -96.75 -0.79 12.51 16 30 H 0.06 1.60 8.06 -2.39 -0.02 1.58 16 31 H 0.08 1.97 7.75 -2.39 -0.02 1.95 16 32 H 0.07 1.26 7.79 -2.39 -0.02 1.24 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.35 6.77 8.91 -89.70 -0.80 5.97 16 Total: -1.00 -70.89 324.97 -4.54 -75.44 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.53 Total: 22.55 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 4.24 Total: -5.66 kcal Atomic # 7 Polarization: -150.39 SS G_CDS: -5.66 Total: -156.05 kcal Atomic # 8 Polarization: -90.61 SS G_CDS: -4.27 Total: -94.88 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 113.37 SS G_CDS: -0.34 Total: 113.02 kcal Total: -70.89 -4.54 -75.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440354824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.152 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds