Wall clock time and date at job start Mon Mar 30 2020 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99909 * 2 1 4 4 C 1.50698 * 109.47140 * 274.99955 * 3 2 1 5 5 H 1.07996 * 120.00007 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00108 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99880 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00246 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46921 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47698 * 119.99496 * 8 6 4 11 11 H 1.48498 * 109.47278 * 240.00089 * 8 6 4 12 12 S 1.65603 * 120.00041 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40192 * 336.46491 * 12 2 1 14 14 O 1.42104 * 106.40006 * 203.54111 * 12 2 1 15 15 N 1.65596 * 107.21642 * 90.00499 * 12 2 1 16 16 C 1.47426 * 125.65292 * 84.06899 * 15 12 2 17 17 C 1.54903 * 104.83395 * 203.86297 * 16 15 12 18 18 C 1.55150 * 101.58244 * 322.99058 * 17 16 15 19 19 C 1.47023 * 125.64730 * 263.76280 * 15 12 2 20 20 H 1.09001 * 109.88470 * 59.78880 * 19 15 12 21 21 C 1.53007 * 109.87846 * 298.62314 * 19 15 12 22 22 N 1.46905 * 109.46663 * 176.26216 * 21 19 15 23 23 H 1.09001 * 109.47422 * 269.99981 * 1 2 3 24 24 H 1.08997 * 109.47265 * 30.00322 * 1 2 3 25 25 H 1.09005 * 109.47029 * 150.00143 * 1 2 3 26 26 H 1.09006 * 109.47197 * 34.99621 * 3 2 1 27 27 H 1.09002 * 109.47194 * 154.99747 * 3 2 1 28 28 H 0.97003 * 119.99459 * 180.02562 * 7 6 4 29 29 H 1.09001 * 110.36204 * 322.70124 * 16 15 12 30 30 H 1.09002 * 110.36223 * 85.02092 * 16 15 12 31 31 H 1.09000 * 111.00405 * 81.06978 * 17 16 15 32 32 H 1.08999 * 111.00318 * 204.91353 * 17 16 15 33 33 H 1.08999 * 110.72030 * 153.86704 * 18 17 16 34 34 H 1.08997 * 110.72323 * 277.13696 * 18 17 16 35 35 H 1.09001 * 109.46796 * 296.26072 * 21 19 15 36 36 H 1.08999 * 109.47018 * 56.26322 * 21 19 15 37 37 H 1.00903 * 110.99706 * 184.72037 * 22 21 19 38 38 H 1.00901 * 111.00060 * 308.67568 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1935 -2.2332 6 6 3.0006 2.9503 -1.6664 7 7 3.5033 3.6469 -0.6706 8 14 3.1796 3.5660 -3.4209 9 1 2.5321 2.6061 -4.3508 10 1 2.5288 4.8947 -3.5482 11 1 4.6207 3.6861 -3.7587 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4063 0.5454 14 8 3.5759 -1.1565 0.5450 15 7 2.5382 -1.8593 -1.5809 16 6 3.6382 -1.3817 -2.4385 17 6 3.1087 -1.5370 -3.8859 18 6 2.2972 -2.8552 -3.7810 19 6 1.6985 -2.7804 -2.3607 20 1 0.6777 -2.4013 -2.4082 21 6 1.7119 -4.1682 -1.7165 22 7 0.8009 -5.0572 -2.4500 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6500 2.0044 0.5894 27 1 3.1857 1.1177 0.4344 28 1 3.9668 4.4806 -0.8473 29 1 3.8586 -0.3357 -2.2253 30 1 4.5272 -1.9951 -2.2918 31 1 2.4636 -0.7016 -4.1577 32 1 3.9311 -1.6398 -4.5938 33 1 1.5073 -2.8826 -4.5315 34 1 2.9529 -3.7205 -3.8781 35 1 2.7226 -4.5750 -1.7510 36 1 1.3867 -4.0904 -0.6791 37 1 0.7331 -5.9573 -1.9989 38 1 -0.1097 -4.6354 -2.5544 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440403579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:14 Heat of formation + Delta-G solvation = -74.346360 kcal Electronic energy + Delta-G solvation = -21563.343308 eV Core-core repulsion = 18374.404674 eV Total energy + Delta-G solvation = -3188.938634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.58813 -36.71194 -35.49574 -35.24734 -34.10363 -32.51510 -30.58687 -28.72030 -27.79757 -25.11679 -24.04400 -22.32248 -21.50868 -20.72956 -18.39258 -17.39931 -16.88594 -16.42829 -15.80476 -15.42218 -15.16322 -14.54577 -14.45674 -13.71763 -13.63285 -13.46619 -13.13341 -12.86109 -12.40219 -12.31513 -12.21082 -11.79690 -11.69244 -11.47329 -11.19842 -11.15539 -11.14720 -10.84975 -10.76156 -10.75268 -10.54482 -10.42698 -10.12056 -9.78397 -8.67788 -8.61256 -8.52734 -8.05654 -6.14287 -4.21125 1.22021 3.21596 3.30059 3.31770 3.46981 4.06225 4.33263 4.61484 4.69249 4.88226 5.03254 5.15257 5.20492 5.43658 5.46055 5.56623 5.67743 5.85528 6.00246 6.04177 6.07489 6.16655 6.22342 6.26682 6.29289 6.48016 6.54661 6.64273 6.81083 7.07877 7.30986 7.37843 7.41232 7.61253 7.82907 8.12125 8.84560 9.44945 10.93746 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.007902 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.998990 B = 3542.702605 C = 4317.888987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.996 5.996 3 C 0.242 3.758 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.799 3.201 13 O -0.997 6.997 14 O -0.974 6.974 15 N -1.010 6.010 16 C 0.120 3.880 17 C -0.133 4.133 18 C -0.108 4.108 19 C 0.157 3.843 20 H 0.066 0.934 21 C 0.027 3.973 22 N -0.845 5.845 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.264 0.736 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.341 0.659 38 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 -11.759 -4.957 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.838 5.838 3 C 0.120 3.880 4 C -0.578 4.578 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.809 3.191 13 O -0.982 6.982 14 O -0.959 6.959 15 N -0.848 5.848 16 C -0.005 4.005 17 C -0.172 4.172 18 C -0.147 4.147 19 C 0.050 3.950 20 H 0.084 0.916 21 C -0.105 4.105 22 N -0.374 5.374 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.153 0.847 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.693 -11.939 -4.620 13.324 hybrid contribution -0.614 0.804 -0.410 1.092 sum -4.306 -11.135 -5.030 12.955 Atomic orbital electron populations 1.21192 0.80172 1.01947 1.00519 1.57680 1.14184 1.23535 1.88412 1.19248 0.92180 0.78925 0.97656 1.21593 1.36497 1.06831 0.92929 0.91706 1.24971 0.95201 0.96512 0.97240 1.69950 1.36720 1.15136 1.30890 0.86535 0.77978 0.78855 0.84633 1.19548 1.20982 1.20796 1.01345 0.73116 0.72469 0.72161 1.93485 1.67462 1.60277 1.76953 1.93578 1.40904 1.85234 1.76146 1.59113 1.37693 1.57249 1.30769 1.22016 0.88231 1.01186 0.89045 1.22813 1.00057 0.97893 0.96416 1.22524 0.99600 0.97831 0.94736 1.21143 0.94231 0.87930 0.91691 0.91597 1.22590 0.97871 0.92803 0.97242 1.58690 1.15571 1.06602 1.56567 0.93785 0.90828 0.93148 0.94423 0.93146 0.92604 0.88578 0.92267 0.90485 0.90601 0.90744 0.90677 0.90918 0.92149 0.84716 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.88 10.31 59.85 0.62 2.50 16 2 N -1.00 -20.89 3.23 -123.05 -0.40 -21.28 16 3 C 0.24 6.03 5.41 -5.20 -0.03 6.00 16 4 C -0.54 -13.85 8.58 -34.44 -0.30 -14.14 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 8 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 S 2.80 56.88 6.24 -107.50 -0.67 56.21 16 13 O -1.00 -20.08 14.36 -57.17 -0.82 -20.90 16 14 O -0.97 -23.16 16.36 -57.17 -0.94 -24.10 16 15 N -1.01 -17.51 3.46 -104.42 -0.36 -17.87 16 16 C 0.12 2.02 7.04 -2.53 -0.02 2.00 16 17 C -0.13 -1.83 7.08 -24.59 -0.17 -2.01 16 18 C -0.11 -1.35 6.26 -24.90 -0.16 -1.50 16 19 C 0.16 2.26 3.17 -66.95 -0.21 2.05 16 20 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 21 C 0.03 0.37 6.19 -3.82 -0.02 0.34 16 22 N -0.84 -9.05 9.43 -10.36 -0.10 -9.15 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 25 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 26 H 0.04 0.98 8.11 -51.93 -0.42 0.55 16 27 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.10 1.87 7.32 -51.93 -0.38 1.49 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.90 7.79 -51.93 -0.40 0.49 16 35 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 36 H 0.06 0.94 5.67 -51.93 -0.29 0.65 16 37 H 0.34 3.09 9.08 -39.29 -0.36 2.74 16 38 H 0.34 3.27 8.93 -39.29 -0.35 2.92 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -30.71 319.40 -9.03 -39.74 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.89 Total: 4.87 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.39 Total: -3.16 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -0.12 Total: -72.72 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.76 Total: -45.00 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 56.88 SS G_CDS: -0.67 Total: 56.21 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.71 -9.03 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440403579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.604 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds