Wall clock time and date at job start Mon Mar 30 2020 02:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99909 * 2 1 4 4 C 1.50698 * 109.47140 * 274.99955 * 3 2 1 5 5 H 1.07996 * 120.00007 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00108 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99880 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00246 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46921 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47698 * 119.99496 * 8 6 4 11 11 H 1.48498 * 109.47278 * 240.00089 * 8 6 4 12 12 S 1.65603 * 120.00041 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40192 * 336.46491 * 12 2 1 14 14 O 1.42104 * 106.40006 * 203.54111 * 12 2 1 15 15 N 1.65596 * 107.21642 * 90.00499 * 12 2 1 16 16 C 1.47426 * 125.65292 * 84.06899 * 15 12 2 17 17 C 1.54903 * 104.83395 * 203.86297 * 16 15 12 18 18 C 1.55150 * 101.58244 * 322.99058 * 17 16 15 19 19 C 1.47023 * 125.64730 * 263.76280 * 15 12 2 20 20 H 1.09001 * 109.88470 * 59.78880 * 19 15 12 21 21 C 1.53007 * 109.87846 * 298.62314 * 19 15 12 22 22 N 1.46905 * 109.46663 * 176.26216 * 21 19 15 23 23 H 1.09001 * 109.47422 * 269.99981 * 1 2 3 24 24 H 1.08997 * 109.47265 * 30.00322 * 1 2 3 25 25 H 1.09005 * 109.47029 * 150.00143 * 1 2 3 26 26 H 1.09006 * 109.47197 * 34.99621 * 3 2 1 27 27 H 1.09002 * 109.47194 * 154.99747 * 3 2 1 28 28 H 0.97003 * 119.99459 * 180.02562 * 7 6 4 29 29 H 1.09001 * 110.36204 * 322.70124 * 16 15 12 30 30 H 1.09002 * 110.36223 * 85.02092 * 16 15 12 31 31 H 1.09000 * 111.00405 * 81.06978 * 17 16 15 32 32 H 1.08999 * 111.00318 * 204.91353 * 17 16 15 33 33 H 1.08999 * 110.72030 * 153.86704 * 18 17 16 34 34 H 1.08997 * 110.72323 * 277.13696 * 18 17 16 35 35 H 1.09001 * 109.46796 * 296.26072 * 21 19 15 36 36 H 1.08999 * 109.47018 * 56.26322 * 21 19 15 37 37 H 1.00903 * 110.99706 * 184.72037 * 22 21 19 38 38 H 1.00901 * 111.00060 * 308.67568 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1935 -2.2332 6 6 3.0006 2.9503 -1.6664 7 7 3.5033 3.6469 -0.6706 8 14 3.1796 3.5660 -3.4209 9 1 2.5321 2.6061 -4.3508 10 1 2.5288 4.8947 -3.5482 11 1 4.6207 3.6861 -3.7587 12 16 2.2930 -1.4342 0.0006 13 8 1.4113 -2.4063 0.5454 14 8 3.5759 -1.1565 0.5450 15 7 2.5382 -1.8593 -1.5809 16 6 3.6382 -1.3817 -2.4385 17 6 3.1087 -1.5370 -3.8859 18 6 2.2972 -2.8552 -3.7810 19 6 1.6985 -2.7804 -2.3607 20 1 0.6777 -2.4013 -2.4082 21 6 1.7119 -4.1682 -1.7165 22 7 0.8009 -5.0572 -2.4500 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6500 2.0044 0.5894 27 1 3.1857 1.1177 0.4344 28 1 3.9668 4.4806 -0.8473 29 1 3.8586 -0.3357 -2.2253 30 1 4.5272 -1.9951 -2.2918 31 1 2.4636 -0.7016 -4.1577 32 1 3.9311 -1.6398 -4.5938 33 1 1.5073 -2.8826 -4.5315 34 1 2.9529 -3.7205 -3.8781 35 1 2.7226 -4.5750 -1.7510 36 1 1.3867 -4.0904 -0.6791 37 1 0.7331 -5.9573 -1.9989 38 1 -0.1097 -4.6354 -2.5544 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440403579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:13 Heat of formation + Delta-G solvation = -98.707180 kcal Electronic energy + Delta-G solvation = -21564.399673 eV Core-core repulsion = 18374.404674 eV Total energy + Delta-G solvation = -3189.994998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.77804 -38.39293 -37.24316 -36.95925 -35.12777 -34.49364 -31.81066 -29.89752 -29.59646 -26.81427 -25.18056 -24.18795 -22.76749 -21.86120 -19.89456 -18.95374 -18.56479 -18.27820 -17.34192 -16.64359 -16.47888 -16.26803 -15.55820 -15.23974 -15.09643 -14.70690 -14.61817 -14.20762 -14.02135 -13.95044 -13.49690 -13.43453 -13.18901 -13.03000 -12.93490 -12.83735 -12.57586 -12.48317 -12.38260 -11.98456 -11.92794 -11.82000 -11.68335 -11.49778 -10.59963 -10.02991 -9.77433 -9.55654 -8.17394 -6.31507 -0.38234 1.43399 1.45058 1.56641 1.93815 2.42592 2.51076 3.14435 3.22774 3.55264 3.82919 3.89500 3.99525 4.06307 4.31209 4.36541 4.56150 4.64670 4.66703 4.75521 4.90945 4.99810 5.02890 5.06283 5.11478 5.16118 5.21122 5.30760 5.42693 5.49650 5.55152 5.74780 5.91769 6.08547 6.17954 6.61521 6.80932 7.38836 8.91316 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.007902 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.998990 B = 3542.702605 C = 4317.888987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.004 6.004 3 C 0.256 3.744 4 C -0.537 4.537 5 H 0.074 0.926 6 C 0.010 3.990 7 N -0.931 5.931 8 Si 0.960 3.040 9 H -0.252 1.252 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.810 3.190 13 O -0.996 6.996 14 O -1.016 7.016 15 N -1.009 6.009 16 C 0.112 3.888 17 C -0.125 4.125 18 C -0.095 4.095 19 C 0.148 3.852 20 H 0.073 0.927 21 C 0.033 3.967 22 N -0.836 5.836 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.020 0.980 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.352 0.648 38 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -13.163 -7.560 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.845 5.845 3 C 0.132 3.868 4 C -0.576 4.576 5 H 0.092 0.908 6 C -0.190 4.190 7 N -0.571 5.571 8 Si 0.784 3.216 9 H -0.176 1.176 10 H -0.209 1.209 11 H -0.208 1.208 12 S 2.820 3.180 13 O -0.981 6.981 14 O -1.001 7.001 15 N -0.850 5.850 16 C -0.013 4.013 17 C -0.164 4.164 18 C -0.134 4.134 19 C 0.041 3.959 20 H 0.091 0.909 21 C -0.099 4.099 22 N -0.367 5.367 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.165 0.835 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.797 -13.379 -7.217 15.940 hybrid contribution -0.317 1.154 0.439 1.275 sum -5.114 -12.224 -6.778 14.884 Atomic orbital electron populations 1.21428 0.78018 1.03227 1.01807 1.57617 1.15679 1.22211 1.88991 1.18806 0.90691 0.80148 0.97141 1.21816 1.35822 1.06694 0.93239 0.90751 1.25855 0.94893 0.96831 1.01388 1.70087 1.37933 1.15734 1.33312 0.85478 0.77893 0.78406 0.79806 1.17575 1.20901 1.20752 1.00813 0.72218 0.72171 0.72777 1.93485 1.67184 1.59797 1.77588 1.93521 1.43046 1.85780 1.77705 1.58864 1.38415 1.57666 1.30017 1.22137 0.88788 0.99380 0.91038 1.22793 1.00816 0.98302 0.94480 1.22501 1.00015 0.97303 0.93577 1.21460 0.94241 0.87613 0.92542 0.90896 1.22421 0.98462 0.92932 0.96132 1.58656 1.15707 1.06626 1.55760 0.92594 0.90694 0.90659 0.96237 0.96668 0.92577 0.91966 0.91189 0.91428 0.88098 0.88658 0.89637 0.91031 0.94501 0.83486 0.84024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.40 10.31 127.77 1.32 4.72 16 2 N -1.00 -42.47 3.23 -543.22 -1.75 -44.22 16 3 C 0.26 13.18 5.41 85.63 0.46 13.64 16 4 C -0.54 -27.79 8.58 25.60 0.22 -27.57 16 5 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 6 C 0.01 0.51 5.46 84.65 0.46 0.98 16 7 N -0.93 -53.98 13.29 21.45 0.28 -53.70 16 8 Si 0.96 41.24 29.54 68.60 2.03 43.26 16 9 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 12 S 2.81 115.01 6.24 -56.49 -0.35 114.66 16 13 O -1.00 -39.58 14.36 -128.00 -1.84 -41.42 16 14 O -1.02 -50.07 16.36 -128.00 -2.09 -52.16 16 15 N -1.01 -34.04 3.46 -484.27 -1.67 -35.72 16 16 C 0.11 3.64 7.04 86.85 0.61 4.25 16 17 C -0.12 -3.09 7.08 31.98 0.23 -2.86 16 18 C -0.10 -2.02 6.26 31.78 0.20 -1.82 16 19 C 0.15 3.88 3.17 45.34 0.14 4.03 16 20 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 21 C 0.03 0.83 6.19 86.30 0.53 1.36 16 22 N -0.84 -15.38 9.43 -186.70 -1.76 -17.14 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 25 H 0.07 2.15 7.79 -2.38 -0.02 2.13 16 26 H 0.02 1.06 8.11 -2.38 -0.02 1.04 16 27 H 0.02 0.89 6.91 -2.39 -0.02 0.87 16 28 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.06 2.45 7.32 -2.39 -0.02 2.43 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 1.69 7.79 -2.39 -0.02 1.67 16 35 H 0.07 1.79 8.05 -2.39 -0.02 1.78 16 36 H 0.04 1.10 5.67 -2.39 -0.01 1.08 16 37 H 0.35 5.39 9.08 -89.69 -0.81 4.58 16 38 H 0.35 5.58 8.93 -89.69 -0.80 4.77 16 Total: -1.00 -66.93 319.40 -3.53 -70.46 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -0.55 Total: 19.27 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 4.18 Total: -3.29 kcal Atomic # 7 Polarization: -145.88 SS G_CDS: -4.90 Total: -150.78 kcal Atomic # 8 Polarization: -89.65 SS G_CDS: -3.93 Total: -93.58 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 115.01 SS G_CDS: -0.35 Total: 114.66 kcal Total: -66.93 -3.53 -70.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440403579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.250 kcal (2) G-P(sol) polarization free energy of solvation -66.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds