Wall clock time and date at job start Mon Mar 30 2020 02:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37093 * 120.00388 * 2 1 4 4 H 1.08003 * 119.99943 * 187.35295 * 3 2 1 5 5 C 1.38951 * 119.99845 * 7.35635 * 3 2 1 6 6 N 1.31411 * 120.00360 * 10.04172 * 5 3 2 7 7 Si 1.86807 * 119.99645 * 190.04664 * 5 3 2 8 8 H 1.48500 * 109.47122 * 59.99870 * 7 5 3 9 9 H 1.48504 * 109.46723 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47301 * 299.99542 * 7 5 3 11 11 C 1.34779 * 119.99534 * 179.97438 * 2 1 3 12 12 O 1.21298 * 119.99894 * 174.40167 * 11 2 1 13 13 C 1.50699 * 120.00035 * 354.40594 * 11 2 1 14 14 C 1.52998 * 115.55294 * 69.91764 * 13 11 2 15 15 C 1.50707 * 109.47060 * 65.13913 * 14 13 11 16 16 C 1.38213 * 120.01115 * 92.75446 * 15 14 13 17 17 C 1.38228 * 120.02515 * 180.02562 * 16 15 14 18 18 C 1.38269 * 120.04934 * 359.97438 * 17 16 15 19 19 C 1.38175 * 120.02372 * 359.97438 * 18 17 16 20 20 C 1.38437 * 120.01136 * 272.77769 * 15 14 13 21 21 F 1.35102 * 120.02836 * 359.97438 * 20 15 14 22 22 C 1.53005 * 117.49620 * 215.58464 * 13 11 2 23 23 C 1.52998 * 117.49889 * 284.24280 * 13 11 2 24 24 H 1.08992 * 109.47267 * 176.83618 * 1 2 3 25 25 H 1.08999 * 109.46936 * 296.84039 * 1 2 3 26 26 H 1.09000 * 109.46356 * 56.83232 * 1 2 3 27 27 H 0.96994 * 120.00268 * 180.02562 * 6 5 3 28 28 H 1.09002 * 109.47091 * 305.14086 * 14 13 11 29 29 H 1.08998 * 109.47119 * 185.13754 * 14 13 11 30 30 H 1.08001 * 119.98954 * 0.04134 * 16 15 14 31 31 H 1.07997 * 119.97704 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.98345 * 179.72613 * 18 17 16 33 33 H 1.08004 * 120.01186 * 179.97438 * 19 18 17 34 34 H 1.09001 * 117.50020 * 215.00193 * 22 13 11 35 35 H 1.08995 * 117.49681 * 0.02751 * 22 13 11 36 36 H 1.09004 * 117.49841 * 359.97438 * 23 13 11 37 37 H 1.08996 * 117.49853 * 144.97427 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.2240 1.1910 -0.1197 5 6 1.4645 2.3856 0.1541 6 7 0.1955 2.3771 0.4955 7 14 2.3460 4.0090 -0.1243 8 1 2.8546 4.0634 -1.5184 9 1 1.3996 5.1310 0.1011 10 1 3.4841 4.1229 0.8227 11 6 2.1388 -1.1673 0.0005 12 8 3.3475 -1.1699 -0.1020 13 6 1.3906 -2.4691 0.1283 14 6 0.5441 -2.8654 -1.0829 15 6 1.4455 -3.1263 -2.2622 16 6 1.8963 -4.4076 -2.5176 17 6 2.7236 -4.6470 -3.5988 18 6 3.1006 -3.6054 -4.4263 19 6 2.6502 -2.3238 -4.1734 20 6 1.8227 -2.0824 -3.0896 21 9 1.3825 -0.8296 -2.8409 22 6 2.0602 -3.5939 0.9207 23 6 0.8625 -2.8474 1.5135 24 1 -0.3633 -1.0260 -0.0567 25 1 -0.3633 0.4640 0.9169 26 1 -0.3632 0.5623 -0.8603 27 1 -0.2835 3.2137 0.6027 28 1 -0.1455 -2.0565 -1.3246 29 1 -0.0215 -3.7680 -0.8513 30 1 1.6020 -5.2221 -1.8724 31 1 3.0757 -5.6485 -3.7975 32 1 3.7505 -3.7929 -5.2682 33 1 2.9451 -1.5102 -4.8196 34 1 1.8975 -4.6161 0.5790 35 1 3.0415 -3.3919 1.3498 36 1 1.0566 -2.1547 2.3326 37 1 -0.0883 -3.3781 1.5620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442657421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:00 Heat of formation + Delta-G solvation = -11.785183 kcal Electronic energy + Delta-G solvation = -22392.372677 eV Core-core repulsion = 19050.782987 eV Total energy + Delta-G solvation = -3341.589691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.26908 -39.50618 -38.34412 -36.04069 -34.50220 -32.12337 -31.37379 -30.24646 -27.31427 -26.05983 -24.68425 -22.51063 -22.25040 -21.96176 -21.01401 -18.10702 -17.16438 -16.81472 -16.08788 -15.98017 -15.31307 -15.11589 -14.74953 -14.30460 -14.10068 -13.90420 -13.36880 -13.17989 -13.09177 -12.71483 -12.23745 -12.04226 -11.71961 -11.63443 -11.43521 -11.14457 -11.09545 -10.90794 -10.81492 -10.56199 -10.35885 -10.04707 -9.98327 -9.49520 -8.96547 -8.70308 -8.30645 -8.19541 -7.68410 -6.13273 -3.70507 1.44244 1.47987 3.22955 3.28204 3.33171 3.81212 3.88301 4.14154 4.29625 4.67520 4.86331 4.93528 5.02973 5.10962 5.19019 5.21351 5.34081 5.48912 5.55415 5.65740 5.73917 5.97556 5.98800 6.00140 6.16814 6.27894 6.32694 6.41527 6.45615 6.56746 6.57158 6.62442 6.65809 7.15216 7.19781 7.51962 7.67360 8.18689 8.61197 9.29829 9.58087 10.12959 10.79513 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.007024 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.253081 B = 3985.275112 C = 4724.172769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.433 5.433 3 C -0.295 4.295 4 H 0.100 0.900 5 C 0.027 3.973 6 N -0.887 5.887 7 Si 0.927 3.073 8 H -0.275 1.275 9 H -0.284 1.284 10 H -0.274 1.274 11 C 0.476 3.524 12 O -0.593 6.593 13 C -0.128 4.128 14 C -0.046 4.046 15 C -0.106 4.106 16 C -0.087 4.087 17 C -0.139 4.139 18 C -0.099 4.099 19 C -0.157 4.157 20 C 0.120 3.880 21 F -0.120 7.120 22 C -0.150 4.150 23 C -0.163 4.163 24 H 0.031 0.969 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.264 0.736 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -12.394 -5.424 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.150 5.150 3 C -0.423 4.423 4 H 0.118 0.882 5 C -0.174 4.174 6 N -0.528 5.528 7 Si 0.754 3.246 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.200 1.200 11 C 0.263 3.737 12 O -0.479 6.479 13 C -0.132 4.132 14 C -0.083 4.083 15 C -0.107 4.107 16 C -0.105 4.105 17 C -0.157 4.157 18 C -0.117 4.117 19 C -0.176 4.176 20 C 0.100 3.900 21 F -0.098 7.098 22 C -0.188 4.188 23 C -0.201 4.201 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.646 -12.133 -5.428 13.393 hybrid contribution 0.187 1.188 -0.116 1.209 sum -1.459 -10.945 -5.543 12.355 Atomic orbital electron populations 1.21905 0.80668 0.96816 1.04225 1.43466 1.05795 1.04376 1.61357 1.19694 0.93690 0.82280 1.46653 0.88206 1.25242 0.95891 0.99508 0.96791 1.70081 1.08956 1.27117 1.46659 0.85989 0.78786 0.80771 0.79088 1.20032 1.20961 1.19954 1.18738 0.86996 0.83252 0.84710 1.90494 1.14244 1.86682 1.56451 1.21268 1.02631 0.96810 0.92477 1.20265 0.95416 1.02288 0.90314 1.19846 1.00981 0.93003 0.96844 1.20827 0.97138 0.95438 0.97096 1.21055 0.99560 0.99122 0.95989 1.20891 0.99288 0.91950 0.99580 1.21131 0.99730 0.98493 0.98269 1.17659 0.96780 0.80023 0.95501 1.91630 1.87152 1.37393 1.93629 1.22864 0.97734 0.95328 1.02832 1.23046 0.97976 1.03279 0.95778 0.95089 0.89813 0.93156 0.92488 0.89230 0.90429 0.85609 0.85891 0.85639 0.85149 0.89045 0.88389 0.88531 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.53 8.25 59.85 0.49 3.03 16 2 N -0.43 -11.47 2.80 -122.19 -0.34 -11.81 16 3 C -0.30 -8.53 9.55 -14.93 -0.14 -8.67 16 4 H 0.10 3.05 7.20 -52.48 -0.38 2.67 16 5 C 0.03 0.74 5.37 -17.47 -0.09 0.64 16 6 N -0.89 -23.94 9.73 55.50 0.54 -23.40 16 7 Si 0.93 21.58 29.56 -169.99 -5.03 16.55 16 8 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.48 12.01 5.25 -10.98 -0.06 11.95 16 12 O -0.59 -17.22 16.41 5.54 0.09 -17.13 16 13 C -0.13 -2.47 0.74 -155.66 -0.12 -2.58 16 14 C -0.05 -0.76 4.58 -27.88 -0.13 -0.88 16 15 C -0.11 -1.80 4.97 -104.55 -0.52 -2.32 16 16 C -0.09 -1.21 9.69 -39.59 -0.38 -1.59 16 17 C -0.14 -1.75 10.04 -39.57 -0.40 -2.15 16 18 C -0.10 -1.31 10.04 -39.59 -0.40 -1.71 16 19 C -0.16 -2.54 10.03 -39.52 -0.40 -2.93 16 20 C 0.12 2.28 6.80 -39.42 -0.27 2.01 16 21 F -0.12 -2.67 15.38 2.25 0.03 -2.64 16 22 C -0.15 -2.49 9.79 -26.69 -0.26 -2.76 16 23 C -0.16 -2.67 9.61 -26.69 -0.26 -2.92 16 24 H 0.03 0.62 4.05 -51.93 -0.21 0.41 16 25 H 0.08 2.10 6.52 -51.93 -0.34 1.76 16 26 H 0.05 1.25 7.64 -51.93 -0.40 0.86 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.09 1.58 5.42 -51.93 -0.28 1.30 16 29 H 0.08 1.01 8.02 -51.93 -0.42 0.60 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.10 1.80 8.07 -51.93 -0.42 1.38 16 36 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -32.74 311.81 -7.46 -40.20 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.54 Total: 4.42 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -2.92 Total: -10.89 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.20 Total: -35.22 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.09 Total: -17.13 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.03 Total: -2.64 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.74 -7.46 -40.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442657421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.420 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds