Wall clock time and date at job start Mon Mar 30 2020 01:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.63854 * 2 1 4 4 C 1.54316 * 110.72327 * 123.14539 * 2 1 3 5 5 N 1.47026 * 107.27365 * 140.55544 * 4 2 1 6 6 S 1.65595 * 125.65010 * 180.79414 * 5 4 2 7 7 O 1.42100 * 106.40296 * 203.54114 * 6 5 4 8 8 O 1.42097 * 106.40565 * 336.46109 * 6 5 4 9 9 N 1.65606 * 107.21790 * 90.00272 * 6 5 4 10 10 C 1.46501 * 119.99749 * 270.00086 * 9 6 5 11 11 C 1.46502 * 120.00154 * 89.99964 * 9 6 5 12 12 C 1.50699 * 109.46958 * 94.99706 * 11 9 6 13 13 H 1.08001 * 120.00471 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99684 * 179.97438 * 12 11 9 15 15 N 1.31517 * 120.00100 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99983 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47277 * 59.99874 * 16 14 12 18 18 H 1.48505 * 109.47423 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47350 * 300.00264 * 16 14 12 20 20 C 1.47425 * 108.70074 * 1.05989 * 5 4 2 21 21 C 1.54910 * 104.83231 * 335.87083 * 20 5 4 22 22 H 1.09002 * 111.00267 * 155.08153 * 21 20 5 23 23 N 1.46897 * 111.03800 * 278.91826 * 21 20 5 24 24 H 1.09003 * 109.47103 * 298.30482 * 1 2 3 25 25 H 1.09000 * 109.47385 * 58.30775 * 1 2 3 26 26 H 1.09004 * 109.47258 * 178.30887 * 1 2 3 27 27 H 1.09004 * 109.88447 * 21.14413 * 4 2 1 28 28 H 1.09000 * 109.88516 * 259.97202 * 4 2 1 29 29 H 1.08993 * 109.47447 * 89.99548 * 10 9 6 30 30 H 1.09001 * 109.47010 * 210.00339 * 10 9 6 31 31 H 1.08999 * 109.46746 * 329.99713 * 10 9 6 32 32 H 1.08995 * 109.46538 * 215.00051 * 11 9 6 33 33 H 1.09004 * 109.46719 * 334.99899 * 11 9 6 34 34 H 0.97003 * 120.00120 * 180.02562 * 15 14 12 35 35 H 1.09001 * 110.36478 * 94.71036 * 20 5 4 36 36 H 1.08998 * 110.36859 * 217.03414 * 20 5 4 37 37 H 1.00900 * 110.99830 * 292.21534 * 23 21 20 38 38 H 1.00901 * 110.99972 * 56.17276 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2445 -1.5495 0.7414 6 16 4.1666 -2.5672 1.6668 7 8 5.4377 -2.6421 1.0360 8 8 3.9913 -2.1533 3.0148 9 7 3.4970 -4.0773 1.5505 10 6 2.4666 -4.4971 2.5035 11 6 3.9350 -4.9935 0.4945 12 6 5.0085 -5.9039 1.0328 13 1 5.3319 -5.8098 2.0590 14 6 5.5772 -6.8577 0.2155 15 7 5.1831 -6.9726 -1.0339 16 14 6.9073 -7.9867 0.8829 17 1 6.3666 -8.7682 2.0240 18 1 7.3514 -8.9153 -0.1875 19 1 8.0618 -7.1737 1.3427 20 6 3.4632 -1.2509 -0.6856 21 6 2.0789 -0.7974 -1.2125 22 1 2.1849 -0.1552 -2.0869 23 7 1.2243 -1.9539 -1.5127 24 1 -0.3633 0.4873 0.9048 25 1 -0.3634 0.5399 -0.8744 26 1 -0.3634 -1.0272 -0.0303 27 1 1.3130 -1.4733 1.5799 28 1 2.3741 -0.0991 1.9978 29 1 1.4832 -4.2304 2.1163 30 1 2.5208 -5.5765 2.6452 31 1 2.6291 -3.9967 3.4581 32 1 3.0878 -5.5904 0.1570 33 1 4.3317 -4.4195 -0.3430 34 1 5.5829 -7.6439 -1.6088 35 1 4.1931 -0.4491 -0.7978 36 1 3.7959 -2.1445 -1.2135 37 1 1.5813 -2.4723 -2.3013 38 1 1.1240 -2.5490 -0.7041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447254713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:56 Heat of formation + Delta-G solvation = -73.221993 kcal Electronic energy + Delta-G solvation = -21258.606007 eV Core-core repulsion = 18069.716129 eV Total energy + Delta-G solvation = -3188.889878 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.15489 -36.65987 -35.52169 -35.18539 -33.13432 -32.46889 -31.78504 -27.85929 -27.60628 -25.94680 -25.06211 -22.40946 -21.89327 -19.81310 -18.62860 -17.51051 -16.91291 -16.48546 -16.21818 -15.59443 -14.93782 -14.53766 -14.14748 -13.79353 -13.69916 -13.40582 -13.31299 -12.83378 -12.66241 -12.32072 -12.20626 -12.11787 -11.66470 -11.55358 -11.41650 -11.19446 -11.14849 -11.09396 -10.81201 -10.74286 -10.66323 -10.53804 -10.06896 -9.81758 -9.15911 -8.51826 -8.46271 -8.10378 -6.10529 -4.14578 1.11660 3.31550 3.35022 3.39630 3.48231 4.06343 4.31244 4.41725 4.51342 4.65010 4.87760 5.06126 5.23412 5.27201 5.36093 5.49106 5.55531 5.61690 5.69687 5.72542 5.81861 5.96034 6.00891 6.05367 6.17063 6.31462 6.38758 6.43680 6.60797 7.12533 7.15298 7.34443 7.43893 7.55691 7.86999 8.15916 8.87450 9.50941 10.98007 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025942 B = 0.005999 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.080327 B = 4666.352736 C = 5043.606102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 H 0.084 0.916 4 C 0.122 3.878 5 N -1.023 6.023 6 S 2.792 3.208 7 O -0.959 6.959 8 O -0.994 6.994 9 N -0.996 5.996 10 C 0.096 3.904 11 C 0.260 3.740 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.896 5.896 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.086 3.914 21 C 0.085 3.915 22 H 0.098 0.902 23 N -0.833 5.833 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.345 0.655 38 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.929 12.040 0.041 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.003 4.003 5 N -0.862 5.862 6 S 2.802 3.198 7 O -0.943 6.943 8 O -0.978 6.978 9 N -0.838 5.838 10 C -0.051 4.051 11 C 0.138 3.862 12 C -0.570 4.570 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.042 4.042 21 C -0.029 4.029 22 H 0.116 0.884 23 N -0.362 5.362 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.158 0.842 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.653 12.635 0.288 15.903 hybrid contribution 1.395 -1.433 0.296 2.022 sum -8.258 11.202 0.584 13.929 Atomic orbital electron populations 1.21568 0.93286 1.02950 1.00909 1.22293 0.96999 0.98789 0.93562 0.89720 1.21761 0.87139 0.94629 0.96810 1.59426 1.44734 1.60504 1.21522 1.01667 0.73325 0.72248 0.72580 1.93627 1.37323 1.86233 1.77119 1.93515 1.86991 1.82580 1.34698 1.57710 1.53579 1.30512 1.42049 1.21342 0.89355 1.02624 0.91761 1.19018 0.95110 0.88029 0.84083 1.21448 1.20594 1.16828 0.98117 0.92256 1.24924 0.96905 0.97346 0.94757 1.69900 1.42941 1.34972 1.05706 0.86565 0.82172 0.80263 0.78516 1.20132 1.21114 1.19987 1.22840 0.98859 1.01414 0.81062 1.22637 0.89374 0.93429 0.97475 0.88437 1.58936 1.52734 1.13087 1.11429 0.93329 0.92425 0.91303 0.91832 0.91548 0.94334 0.90365 0.91657 0.94797 0.94821 0.92607 0.91357 0.90423 0.84159 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 8.81 37.16 0.33 -0.82 16 2 C -0.10 -0.96 3.45 -88.79 -0.31 -1.26 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.12 1.52 6.25 -3.07 -0.02 1.50 16 5 N -1.02 -15.73 3.76 -111.42 -0.42 -16.15 16 6 S 2.79 56.43 6.31 -107.50 -0.68 55.75 16 7 O -0.96 -23.33 16.69 -57.17 -0.95 -24.28 16 8 O -0.99 -21.13 16.32 -57.17 -0.93 -22.07 16 9 N -1.00 -20.50 3.23 -123.05 -0.40 -20.89 16 10 C 0.10 1.64 10.68 59.85 0.64 2.28 16 11 C 0.26 6.39 5.08 -5.19 -0.03 6.36 16 12 C -0.53 -14.86 9.38 -34.44 -0.32 -15.18 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.90 -25.83 13.29 55.43 0.74 -25.10 16 16 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 20 C 0.09 1.17 6.64 -2.53 -0.02 1.15 16 21 C 0.08 0.90 4.01 -65.56 -0.26 0.64 16 22 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 23 N -0.83 -9.06 8.04 -2.85 -0.02 -9.08 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.67 7.04 -51.93 -0.37 0.31 16 27 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.95 16 31 H 0.06 1.07 7.02 -51.93 -0.36 0.71 16 32 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.03 0.88 7.61 -51.93 -0.40 0.48 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.35 3.65 9.08 -39.29 -0.36 3.29 16 38 H 0.34 4.10 8.42 -39.29 -0.33 3.77 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -32.79 322.67 -8.90 -41.69 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.99 Total: 2.14 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.09 Total: -3.66 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -0.10 Total: -71.22 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -1.89 Total: -46.35 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 56.43 SS G_CDS: -0.68 Total: 55.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.79 -8.90 -41.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447254713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.537 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds