Wall clock time and date at job start Mon Mar 30 2020 01:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.89043 * 2 1 4 4 C 1.54914 * 111.00212 * 123.92094 * 2 1 3 5 5 N 1.47427 * 104.83300 * 155.08767 * 4 2 1 6 6 S 1.65597 * 125.64990 * 155.83821 * 5 4 2 7 7 O 1.42104 * 106.39795 * 203.53637 * 6 5 4 8 8 O 1.42103 * 106.39972 * 336.45169 * 6 5 4 9 9 N 1.65591 * 107.22133 * 89.99667 * 6 5 4 10 10 C 1.46501 * 119.99926 * 270.00239 * 9 6 5 11 11 C 1.46502 * 120.00317 * 89.99985 * 9 6 5 12 12 C 1.50695 * 109.47094 * 95.00045 * 11 9 6 13 13 H 1.07994 * 120.00149 * 359.97438 * 12 11 9 14 14 C 1.37876 * 119.99942 * 180.02562 * 12 11 9 15 15 N 1.31515 * 119.99984 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47261 * 90.00056 * 16 14 12 18 18 H 1.48498 * 109.47128 * 210.00239 * 16 14 12 19 19 H 1.48506 * 109.46760 * 329.99970 * 16 14 12 20 20 C 1.47021 * 108.70198 * 335.86926 * 5 4 2 21 21 C 1.54327 * 107.27156 * 1.05912 * 20 5 4 22 22 H 1.08994 * 110.87537 * 263.76049 * 21 20 5 23 23 N 1.46906 * 110.71815 * 140.55710 * 21 20 5 24 24 H 1.08999 * 109.47270 * 183.88080 * 1 2 3 25 25 H 1.08997 * 109.47133 * 303.88467 * 1 2 3 26 26 H 1.09001 * 109.46719 * 63.88346 * 1 2 3 27 27 H 1.09004 * 110.36337 * 273.92110 * 4 2 1 28 28 H 1.08990 * 110.36921 * 36.24487 * 4 2 1 29 29 H 1.08996 * 109.47235 * 89.99650 * 10 9 6 30 30 H 1.09004 * 109.46749 * 209.99960 * 10 9 6 31 31 H 1.09004 * 109.46932 * 329.99631 * 10 9 6 32 32 H 1.09003 * 109.47242 * 215.00608 * 11 9 6 33 33 H 1.09004 * 109.46475 * 334.99671 * 11 9 6 34 34 H 0.97005 * 120.00068 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.88375 * 241.64442 * 20 5 4 36 36 H 1.08994 * 109.88401 * 120.47760 * 20 5 4 37 37 H 1.00896 * 111.00309 * 66.47811 * 23 21 20 38 38 H 1.00902 * 110.99923 * 190.43974 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0852 -0.8071 1.2001 5 7 3.4271 -1.2433 0.7731 6 16 4.6815 -1.6335 1.7813 7 8 5.8728 -1.4536 1.0278 8 8 4.4310 -0.9655 3.0104 9 7 4.5693 -3.2548 2.0988 10 6 3.7877 -3.7243 3.2455 11 6 5.2515 -4.2197 1.2329 12 6 6.5945 -4.5631 1.8239 13 1 6.9087 -4.1077 2.7513 14 6 7.4227 -5.4578 1.1798 15 7 7.0407 -6.0111 0.0496 16 14 9.0872 -5.8840 1.9126 17 1 8.9445 -7.0507 2.8201 18 1 10.0373 -6.2187 0.8216 19 1 9.6031 -4.7211 2.6788 20 6 3.4675 -1.2739 -0.6963 21 6 2.0862 -0.8076 -1.2024 22 1 1.4452 -1.6609 -1.4234 23 7 2.2292 0.0526 -2.3847 24 1 -0.3634 -1.0253 0.0696 25 1 -0.3633 0.5729 0.8531 26 1 -0.3633 0.4524 -0.9228 27 1 2.1559 -0.1726 2.0837 28 1 1.4519 -1.6708 1.4019 29 1 2.7574 -3.8991 2.9359 30 1 4.2167 -4.6531 3.6217 31 1 3.8077 -2.9699 4.0322 32 1 4.6485 -5.1242 1.1510 33 1 5.3903 -3.7849 0.2431 34 1 7.6231 -6.6409 -0.4033 35 1 3.6651 -2.2890 -1.0406 36 1 4.2426 -0.5994 -1.0599 37 1 2.5907 -0.4684 -3.1694 38 1 1.3531 0.4957 -2.6175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447254715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:58 Heat of formation + Delta-G solvation = -73.104950 kcal Electronic energy + Delta-G solvation = -20915.394388 eV Core-core repulsion = 17726.509586 eV Total energy + Delta-G solvation = -3188.884802 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.93987 -36.59610 -35.46073 -35.11588 -33.62081 -32.42219 -31.99379 -27.78645 -27.40242 -26.02054 -25.01273 -22.30495 -21.72838 -20.24165 -18.51198 -17.36759 -16.83819 -16.33674 -16.18204 -15.50607 -15.35011 -14.55550 -14.19815 -13.86352 -13.67322 -13.49855 -13.27810 -13.05160 -12.65822 -12.28319 -12.15129 -12.13887 -11.61372 -11.49711 -11.47512 -11.14420 -11.12419 -11.06127 -10.92952 -10.67642 -10.62378 -10.49982 -10.01742 -9.74859 -8.91520 -8.76778 -8.43303 -8.04346 -6.05957 -4.09804 1.18145 3.32308 3.38614 3.44739 3.51837 4.12322 4.25031 4.37522 4.45586 4.55479 4.92232 5.03762 5.22883 5.28887 5.29449 5.40412 5.44734 5.64091 5.68440 5.72043 5.84914 5.92495 5.99791 6.02222 6.15973 6.23689 6.39759 6.49630 6.67955 6.99660 7.22645 7.25821 7.40959 7.61926 7.91794 8.21120 8.92602 9.55431 11.02720 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.005474 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.851128 B = 5113.739767 C = 5528.055075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.093 0.907 4 C 0.123 3.877 5 N -1.021 6.021 6 S 2.794 3.206 7 O -0.957 6.957 8 O -0.994 6.994 9 N -0.996 5.996 10 C 0.096 3.904 11 C 0.258 3.742 12 C -0.528 4.528 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.897 5.897 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.128 3.872 21 C 0.083 3.917 22 H 0.053 0.947 23 N -0.840 5.840 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.345 0.655 38 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.979 8.808 -2.171 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.112 0.888 4 C -0.004 4.004 5 N -0.860 5.860 6 S 2.804 3.196 7 O -0.941 6.941 8 O -0.978 6.978 9 N -0.839 5.839 10 C -0.050 4.050 11 C 0.135 3.865 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.536 5.536 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.001 3.999 21 C -0.029 4.029 22 H 0.071 0.929 23 N -0.371 5.371 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.158 0.842 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.650 9.642 -1.477 16.777 hybrid contribution -0.046 -1.374 -0.319 1.411 sum -13.696 8.268 -1.796 16.099 Atomic orbital electron populations 1.21740 0.94184 1.02113 1.02001 1.22441 0.95405 1.00265 0.93798 0.88833 1.21996 0.83115 0.97773 0.97490 1.59325 1.27066 1.82949 1.16632 1.01605 0.72470 0.73049 0.72489 1.93625 1.42791 1.85387 1.72304 1.93510 1.86215 1.74153 1.43921 1.57714 1.62986 1.25357 1.37829 1.21333 0.93876 1.01677 0.88161 1.19045 0.91532 0.87343 0.88535 1.21494 1.01475 1.25181 1.08619 0.92168 1.24929 0.98456 0.95802 0.94810 1.69920 1.37526 1.29794 1.16344 0.86502 0.83525 0.78686 0.78794 1.20613 1.21031 1.19669 1.21619 0.97462 1.01371 0.79417 1.22429 0.95700 0.93968 0.90828 0.92929 1.58621 1.34190 1.36374 1.07923 0.92380 0.92034 0.92476 0.90100 0.91848 0.94441 0.90399 0.91630 0.94837 0.94566 0.92704 0.91558 0.90135 0.84184 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.31 37.16 0.35 -0.74 16 2 C -0.10 -1.03 3.28 -88.47 -0.29 -1.32 16 3 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.57 6.57 -2.52 -0.02 1.55 16 5 N -1.02 -16.71 3.76 -111.42 -0.42 -17.12 16 6 S 2.79 58.32 6.31 -107.50 -0.68 57.65 16 7 O -0.96 -23.85 16.69 -57.17 -0.95 -24.80 16 8 O -0.99 -21.41 16.06 -57.17 -0.92 -22.33 16 9 N -1.00 -21.33 3.23 -123.05 -0.40 -21.73 16 10 C 0.10 1.70 10.68 59.85 0.64 2.34 16 11 C 0.26 6.56 5.08 -5.20 -0.03 6.53 16 12 C -0.53 -15.06 9.38 -34.44 -0.32 -15.39 16 13 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 16 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.13 1.91 6.74 -3.06 -0.02 1.89 16 21 C 0.08 0.92 3.56 -65.87 -0.23 0.68 16 22 H 0.05 0.54 8.04 -51.93 -0.42 0.12 16 23 N -0.84 -7.87 9.28 -3.11 -0.03 -7.90 16 24 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 1.03 7.78 -51.93 -0.40 0.63 16 28 H 0.06 0.72 7.98 -51.93 -0.41 0.30 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.07 1.10 7.02 -51.93 -0.36 0.73 16 32 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 33 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.29 8.03 -51.93 -0.42 0.88 16 37 H 0.35 2.87 9.08 -39.29 -0.36 2.51 16 38 H 0.34 2.47 9.03 -39.29 -0.35 2.11 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -34.00 325.18 -8.85 -42.84 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.04 Total: -0.20 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.02 Total: -2.77 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -0.11 Total: -72.32 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.87 Total: -47.13 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 58.32 SS G_CDS: -0.68 Total: 57.65 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.00 -8.85 -42.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447254715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.262 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds