Wall clock time and date at job start Mon Mar 30 2020 01:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.89043 * 2 1 4 4 C 1.54914 * 111.00212 * 123.92094 * 2 1 3 5 5 N 1.47427 * 104.83300 * 155.08767 * 4 2 1 6 6 S 1.65597 * 125.64990 * 155.83821 * 5 4 2 7 7 O 1.42104 * 106.39795 * 203.53637 * 6 5 4 8 8 O 1.42103 * 106.39972 * 336.45169 * 6 5 4 9 9 N 1.65591 * 107.22133 * 89.99667 * 6 5 4 10 10 C 1.46501 * 119.99926 * 270.00239 * 9 6 5 11 11 C 1.46502 * 120.00317 * 89.99985 * 9 6 5 12 12 C 1.50695 * 109.47094 * 95.00045 * 11 9 6 13 13 H 1.07994 * 120.00149 * 359.97438 * 12 11 9 14 14 C 1.37876 * 119.99942 * 180.02562 * 12 11 9 15 15 N 1.31515 * 119.99984 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47261 * 90.00056 * 16 14 12 18 18 H 1.48498 * 109.47128 * 210.00239 * 16 14 12 19 19 H 1.48506 * 109.46760 * 329.99970 * 16 14 12 20 20 C 1.47021 * 108.70198 * 335.86926 * 5 4 2 21 21 C 1.54327 * 107.27156 * 1.05912 * 20 5 4 22 22 H 1.08994 * 110.87537 * 263.76049 * 21 20 5 23 23 N 1.46906 * 110.71815 * 140.55710 * 21 20 5 24 24 H 1.08999 * 109.47270 * 183.88080 * 1 2 3 25 25 H 1.08997 * 109.47133 * 303.88467 * 1 2 3 26 26 H 1.09001 * 109.46719 * 63.88346 * 1 2 3 27 27 H 1.09004 * 110.36337 * 273.92110 * 4 2 1 28 28 H 1.08990 * 110.36921 * 36.24487 * 4 2 1 29 29 H 1.08996 * 109.47235 * 89.99650 * 10 9 6 30 30 H 1.09004 * 109.46749 * 209.99960 * 10 9 6 31 31 H 1.09004 * 109.46932 * 329.99631 * 10 9 6 32 32 H 1.09003 * 109.47242 * 215.00608 * 11 9 6 33 33 H 1.09004 * 109.46475 * 334.99671 * 11 9 6 34 34 H 0.97005 * 120.00068 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.88375 * 241.64442 * 20 5 4 36 36 H 1.08994 * 109.88401 * 120.47760 * 20 5 4 37 37 H 1.00896 * 111.00309 * 66.47811 * 23 21 20 38 38 H 1.00902 * 110.99923 * 190.43974 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0852 -0.8071 1.2001 5 7 3.4271 -1.2433 0.7731 6 16 4.6815 -1.6335 1.7813 7 8 5.8728 -1.4536 1.0278 8 8 4.4310 -0.9655 3.0104 9 7 4.5693 -3.2548 2.0988 10 6 3.7877 -3.7243 3.2455 11 6 5.2515 -4.2197 1.2329 12 6 6.5945 -4.5631 1.8239 13 1 6.9087 -4.1077 2.7513 14 6 7.4227 -5.4578 1.1798 15 7 7.0407 -6.0111 0.0496 16 14 9.0872 -5.8840 1.9126 17 1 8.9445 -7.0507 2.8201 18 1 10.0373 -6.2187 0.8216 19 1 9.6031 -4.7211 2.6788 20 6 3.4675 -1.2739 -0.6963 21 6 2.0862 -0.8076 -1.2024 22 1 1.4452 -1.6609 -1.4234 23 7 2.2292 0.0526 -2.3847 24 1 -0.3634 -1.0253 0.0696 25 1 -0.3633 0.5729 0.8531 26 1 -0.3633 0.4524 -0.9228 27 1 2.1559 -0.1726 2.0837 28 1 1.4519 -1.6708 1.4019 29 1 2.7574 -3.8991 2.9359 30 1 4.2167 -4.6531 3.6217 31 1 3.8077 -2.9699 4.0322 32 1 4.6485 -5.1242 1.1510 33 1 5.3903 -3.7849 0.2431 34 1 7.6231 -6.6409 -0.4033 35 1 3.6651 -2.2890 -1.0406 36 1 4.2426 -0.5994 -1.0599 37 1 2.5907 -0.4684 -3.1694 38 1 1.3531 0.4957 -2.6175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447254715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:58 Heat of formation + Delta-G solvation = -100.856851 kcal Electronic energy + Delta-G solvation = -20916.597801 eV Core-core repulsion = 17726.509586 eV Total energy + Delta-G solvation = -3190.088215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.95799 -38.35740 -37.25035 -36.90324 -34.63042 -34.52912 -32.83191 -29.70635 -28.48560 -27.02570 -26.66986 -24.24424 -22.80945 -21.14017 -20.02290 -19.04907 -18.55064 -18.20123 -17.49494 -16.95008 -16.41969 -16.29013 -15.39312 -15.17434 -15.06988 -14.82087 -14.58996 -14.13042 -14.08651 -13.91122 -13.61608 -13.38866 -13.23713 -13.07525 -12.98107 -12.95677 -12.82360 -12.50277 -12.41954 -12.06510 -11.98975 -11.87432 -11.76611 -11.46935 -10.62282 -10.07807 -9.81292 -9.64785 -8.23012 -6.35223 -0.44705 1.37388 1.40016 1.50727 1.99250 2.38089 2.54464 3.07661 3.14105 3.50381 3.57372 3.69221 4.07048 4.13606 4.25345 4.46104 4.50618 4.58015 4.68336 4.71891 4.76899 4.83290 4.93104 5.02156 5.02393 5.12771 5.14836 5.28591 5.31790 5.43321 5.50968 5.67375 5.91388 6.07470 6.24814 6.64172 6.72592 7.33815 8.84741 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.005474 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.851128 B = 5113.739767 C = 5528.055075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.086 0.914 4 C 0.110 3.890 5 N -1.018 6.018 6 S 2.808 3.192 7 O -1.007 7.007 8 O -1.003 7.003 9 N -1.004 6.004 10 C 0.089 3.911 11 C 0.274 3.726 12 C -0.552 4.552 13 H 0.050 0.950 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.958 3.042 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.119 3.881 21 C 0.095 3.905 22 H 0.069 0.931 23 N -0.846 5.846 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.013 0.987 34 H 0.268 0.732 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.351 0.649 38 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.700 9.012 -2.046 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.014 4.014 5 N -0.860 5.860 6 S 2.818 3.182 7 O -0.991 6.991 8 O -0.987 6.987 9 N -0.845 5.845 10 C -0.056 4.056 11 C 0.150 3.850 12 C -0.591 4.591 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.782 3.218 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.007 4.007 21 C -0.018 4.018 22 H 0.087 0.913 23 N -0.379 5.379 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.397 9.850 -1.329 18.326 hybrid contribution 0.422 -1.378 -0.377 1.489 sum -14.975 8.472 -1.706 17.290 Atomic orbital electron populations 1.21717 0.91391 1.02949 1.03328 1.22423 0.97468 0.99152 0.92020 0.89563 1.22398 0.81332 0.99045 0.98669 1.58906 1.27742 1.82406 1.16905 1.00863 0.72319 0.72794 0.72183 1.93554 1.46202 1.86008 1.73305 1.93484 1.86431 1.74182 1.44639 1.57611 1.63556 1.24799 1.38579 1.21570 0.95148 1.01598 0.87277 1.18598 0.90798 0.87573 0.88025 1.21819 1.03151 1.25538 1.08602 0.93128 1.25745 1.02007 0.95654 0.95215 1.70004 1.38873 1.30185 1.17247 0.85567 0.79169 0.78665 0.78394 1.18841 1.20194 1.20058 1.21787 0.99853 1.00540 0.78545 1.22311 0.93001 0.94869 0.91636 0.91332 1.58532 1.35378 1.36302 1.07718 0.91720 0.91133 0.90855 0.90135 0.89787 0.90935 0.90960 0.90725 0.95344 0.96852 0.92280 0.92732 0.91983 0.83501 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.31 71.98 0.67 -0.90 16 2 C -0.09 -1.67 3.28 -9.40 -0.03 -1.70 16 3 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 4 C 0.11 2.62 6.57 86.86 0.57 3.19 16 5 N -1.02 -33.09 3.76 -506.42 -1.90 -34.99 16 6 S 2.81 119.09 6.31 -56.49 -0.36 118.74 16 7 O -1.01 -52.20 16.69 -128.00 -2.14 -54.34 16 8 O -1.00 -43.14 16.06 -128.00 -2.06 -45.19 16 9 N -1.00 -43.34 3.23 -543.21 -1.75 -45.09 16 10 C 0.09 3.06 10.68 127.77 1.36 4.43 16 11 C 0.27 14.29 5.08 85.63 0.43 14.73 16 12 C -0.55 -32.07 9.38 25.60 0.24 -31.83 16 13 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 14 C 0.01 0.77 5.46 84.65 0.46 1.24 16 15 N -0.92 -54.70 13.29 21.45 0.28 -54.42 16 16 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 17 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 C 0.12 3.58 6.74 86.73 0.58 4.17 16 21 C 0.09 1.92 3.56 46.10 0.16 2.08 16 22 H 0.07 1.21 8.04 -2.39 -0.02 1.19 16 23 N -0.85 -14.27 9.28 -163.75 -1.52 -15.79 16 24 H 0.06 0.70 8.07 -2.39 -0.02 0.68 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.08 1.92 7.78 -2.38 -0.02 1.90 16 28 H 0.08 1.66 7.98 -2.39 -0.02 1.64 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.54 8.07 -2.38 -0.02 2.52 16 31 H 0.07 2.41 7.02 -2.38 -0.02 2.39 16 32 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 33 H 0.01 0.76 7.61 -2.39 -0.02 0.74 16 34 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 2.07 8.03 -2.39 -0.02 2.05 16 37 H 0.35 5.33 9.08 -89.70 -0.81 4.51 16 38 H 0.36 4.16 9.03 -89.69 -0.81 3.35 16 Total: -1.00 -73.96 325.18 -3.51 -77.48 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -0.56 Total: 10.89 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.46 Total: -4.60 kcal Atomic # 7 Polarization: -145.40 SS G_CDS: -4.89 Total: -150.29 kcal Atomic # 8 Polarization: -95.34 SS G_CDS: -4.19 Total: -99.53 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 119.09 SS G_CDS: -0.36 Total: 118.74 kcal Total: -73.96 -3.51 -77.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447254715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.381 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds