Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47272 * 2 1 4 4 N 1.46495 * 109.47487 * 179.97438 * 3 2 1 5 5 C 1.36735 * 119.99809 * 270.00472 * 4 3 2 6 6 H 1.07997 * 120.00013 * 137.54926 * 5 4 3 7 7 C 1.39102 * 119.99963 * 317.54132 * 5 4 3 8 8 N 1.31333 * 120.00388 * 351.68516 * 7 5 4 9 9 Si 1.86802 * 119.99788 * 171.67723 * 7 5 4 10 10 H 1.48501 * 109.47308 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46977 * 120.00524 * 9 7 5 12 12 H 1.48506 * 109.47235 * 240.00516 * 9 7 5 13 13 C 1.34773 * 120.00043 * 89.99730 * 4 3 2 14 14 O 1.21774 * 120.00081 * 354.54272 * 13 4 3 15 15 C 1.46155 * 120.00258 * 174.80673 * 13 4 3 16 16 C 1.35051 * 120.00230 * 173.79359 * 15 13 4 17 17 C 1.47052 * 119.99865 * 348.73460 * 16 15 13 18 18 C 1.39932 * 120.14314 * 313.18466 * 17 16 15 19 19 C 1.37780 * 119.84837 * 179.75054 * 18 17 16 20 20 C 1.38695 * 120.14455 * 0.55116 * 19 18 17 21 21 F 1.35103 * 119.85245 * 179.72048 * 20 19 18 22 22 C 1.38696 * 120.29933 * 359.70613 * 20 19 18 23 23 C 1.37773 * 120.14808 * 0.02562 * 22 20 19 24 24 H 1.08998 * 109.46942 * 60.00219 * 1 2 3 25 25 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47012 * 299.99973 * 1 2 3 27 27 H 1.09000 * 109.47375 * 240.00403 * 2 1 3 28 28 H 1.08998 * 109.47208 * 120.00516 * 2 1 3 29 29 H 1.09000 * 109.46591 * 59.99923 * 3 2 1 30 30 H 1.08998 * 109.47426 * 300.00383 * 3 2 1 31 31 H 0.96999 * 120.00009 * 185.00160 * 8 7 5 32 32 H 1.08004 * 119.99400 * 353.79711 * 15 13 4 33 33 H 1.07997 * 119.99493 * 168.72827 * 16 15 13 34 34 H 1.07997 * 120.08007 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.92925 * 180.25382 * 19 18 17 36 36 H 1.08008 * 119.92626 * 180.02562 * 22 20 19 37 37 H 1.07999 * 120.07614 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1882 1.4427 1.1851 6 1 5.0558 0.8114 1.3081 7 6 3.7657 2.2559 2.2315 8 7 2.8159 3.1410 2.0332 9 14 4.5493 2.0890 3.9191 10 1 5.5873 1.0278 3.8801 11 1 5.1754 3.3795 4.3039 12 1 3.5084 1.7275 4.9146 13 6 4.1794 1.4424 -1.1663 14 8 3.5751 1.3418 -2.2187 15 6 5.6364 1.5570 -1.1683 16 6 6.3221 1.4312 -2.3250 17 6 5.6430 0.9373 -3.5322 18 6 4.8274 -0.1978 -3.4651 19 6 4.1900 -0.6522 -4.5988 20 6 4.3644 0.0060 -5.8071 21 9 3.7409 -0.4480 -6.9164 22 6 5.1756 1.1285 -5.8818 23 6 5.8145 1.5967 -4.7545 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 2.5715 3.7571 2.7415 32 1 6.1647 1.7422 -0.2447 33 1 7.3690 1.6934 -2.3633 34 1 4.6944 -0.7139 -2.5258 35 1 3.5570 -1.5257 -4.5476 36 1 5.3068 1.6367 -6.8258 37 1 6.4456 2.4711 -4.8139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491479876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = -35.779277 kcal Electronic energy + Delta-G solvation = -21335.035768 eV Core-core repulsion = 17992.405616 eV Total energy + Delta-G solvation = -3342.630153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.52139 -39.18610 -37.97162 -35.25690 -33.10391 -32.61586 -31.36187 -30.68996 -28.68683 -26.03451 -24.80533 -22.98570 -22.39107 -21.16136 -20.05200 -18.85433 -17.39401 -16.78050 -16.30976 -15.73394 -15.21065 -14.87321 -14.80401 -14.21907 -14.02043 -13.70066 -13.40744 -13.16598 -13.10769 -12.77941 -12.43004 -12.33932 -11.75133 -11.60239 -11.43760 -11.30856 -11.02396 -10.99897 -10.73945 -10.62103 -10.34658 -10.32689 -9.77443 -9.28233 -9.09587 -8.69491 -8.41948 -7.47938 -7.43286 -6.44353 -4.23321 1.26628 1.78946 2.35329 3.04719 3.13319 3.15923 3.97325 4.15030 4.39878 4.68425 4.80560 4.94896 5.15569 5.25402 5.30036 5.68069 5.73885 5.79732 5.84892 5.94804 6.10959 6.26516 6.32629 6.42605 6.53290 6.54125 6.55093 6.63370 6.68815 6.81781 6.83024 6.98766 7.08504 7.20524 7.25616 7.38554 7.53274 7.91219 8.30591 8.96674 9.44970 9.89529 10.53277 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.005227 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.581320 B = 5355.461055 C = 6261.846276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.108 3.892 4 N -0.423 5.423 5 C -0.334 4.334 6 H 0.089 0.911 7 C 0.045 3.955 8 N -0.861 5.861 9 Si 0.919 3.081 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.480 3.520 14 O -0.592 6.592 15 C -0.138 4.138 16 C -0.105 4.105 17 C -0.038 4.038 18 C -0.008 4.008 19 C -0.163 4.163 20 C 0.086 3.914 21 F -0.151 7.151 22 C -0.167 4.167 23 C -0.088 4.088 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.051 0.949 31 H 0.272 0.728 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -4.002 -5.456 7.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C -0.016 4.016 4 N -0.138 5.138 5 C -0.463 4.463 6 H 0.107 0.893 7 C -0.162 4.162 8 N -0.497 5.497 9 Si 0.746 3.254 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.271 3.729 14 O -0.480 6.480 15 C -0.158 4.158 16 C -0.125 4.125 17 C -0.039 4.039 18 C -0.027 4.027 19 C -0.182 4.182 20 C 0.067 3.933 21 F -0.130 7.130 22 C -0.186 4.186 23 C -0.106 4.106 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.544 -3.952 -5.806 7.867 hybrid contribution 0.142 0.116 0.924 0.942 sum 3.686 -3.836 -4.882 7.221 Atomic orbital electron populations 1.21652 0.96666 1.00362 1.01372 1.21794 0.94632 0.99450 1.01072 1.21608 0.81468 0.94635 1.03859 1.43426 1.05003 1.60859 1.04513 1.19504 1.12847 1.24356 0.89551 0.89304 1.25586 0.95971 0.94293 1.00315 1.69668 1.28303 1.17465 1.34291 0.85981 0.79203 0.78512 0.81751 1.19056 1.20471 1.20431 1.18513 0.88000 0.82256 0.84132 1.90730 1.70228 1.56211 1.30849 1.23370 0.95214 0.99451 0.97791 1.22048 0.98609 1.00176 0.91713 1.18900 0.97146 0.94929 0.92890 1.20911 0.91360 0.94025 0.96370 1.20840 1.03472 1.02143 0.91739 1.17762 0.96800 0.96046 0.82705 1.91430 1.81144 1.88761 1.51691 1.20781 1.00772 0.97291 0.99789 1.20958 0.99421 0.99019 0.91250 0.93206 0.93715 0.92983 0.93115 0.92458 0.86931 0.92999 0.91710 0.84973 0.85770 0.86080 0.85727 0.85729 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.13 -2.65 6.26 -26.73 -0.17 -2.82 16 3 C 0.11 2.53 4.94 -4.04 -0.02 2.51 16 4 N -0.42 -10.25 2.50 -116.49 -0.29 -10.54 16 5 C -0.33 -8.03 8.15 -15.04 -0.12 -8.16 16 6 H 0.09 2.03 7.27 -52.49 -0.38 1.65 16 7 C 0.04 1.08 5.22 -17.44 -0.09 0.98 16 8 N -0.86 -21.84 11.04 55.50 0.61 -21.23 16 9 Si 0.92 18.47 29.57 -169.99 -5.03 13.44 16 10 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 13 C 0.48 11.20 6.73 -13.09 -0.09 11.11 16 14 O -0.59 -14.62 11.97 5.12 0.06 -14.56 16 15 C -0.14 -2.70 9.13 -37.54 -0.34 -3.05 16 16 C -0.10 -1.76 9.79 -37.14 -0.36 -2.13 16 17 C -0.04 -0.68 4.40 -105.06 -0.46 -1.14 16 18 C -0.01 -0.15 6.70 -39.11 -0.26 -0.41 16 19 C -0.16 -2.81 10.01 -39.58 -0.40 -3.20 16 20 C 0.09 1.45 7.31 -39.24 -0.29 1.16 16 21 F -0.15 -2.50 17.26 2.25 0.04 -2.46 16 22 C -0.17 -2.60 10.01 -39.58 -0.40 -3.00 16 23 C -0.09 -1.39 9.79 -39.12 -0.38 -1.78 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.11 2.82 5.36 -51.93 -0.28 2.54 16 30 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 31 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.13 2.47 6.86 -52.48 -0.36 2.11 16 33 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.12 2.27 7.33 -52.49 -0.38 1.88 16 35 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 317.59 15.07 4.79 4.79 Total: -1.00 -27.38 317.59 -7.57 -34.95 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.73 Total: 7.58 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.01 Total: -11.97 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.32 Total: -31.77 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.06 Total: -14.56 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.38 -7.57 -34.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491479876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.832 kcal (2) G-P(sol) polarization free energy of solvation -27.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds