Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47272 * 2 1 4 4 N 1.46495 * 109.47487 * 179.97438 * 3 2 1 5 5 C 1.36735 * 119.99809 * 270.00472 * 4 3 2 6 6 H 1.07997 * 120.00013 * 137.54926 * 5 4 3 7 7 C 1.39102 * 119.99963 * 317.54132 * 5 4 3 8 8 N 1.31333 * 120.00388 * 351.68516 * 7 5 4 9 9 Si 1.86802 * 119.99788 * 171.67723 * 7 5 4 10 10 H 1.48501 * 109.47308 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46977 * 120.00524 * 9 7 5 12 12 H 1.48506 * 109.47235 * 240.00516 * 9 7 5 13 13 C 1.34773 * 120.00043 * 89.99730 * 4 3 2 14 14 O 1.21774 * 120.00081 * 354.54272 * 13 4 3 15 15 C 1.46155 * 120.00258 * 174.80673 * 13 4 3 16 16 C 1.35051 * 120.00230 * 173.79359 * 15 13 4 17 17 C 1.47052 * 119.99865 * 348.73460 * 16 15 13 18 18 C 1.39932 * 120.14314 * 313.18466 * 17 16 15 19 19 C 1.37780 * 119.84837 * 179.75054 * 18 17 16 20 20 C 1.38695 * 120.14455 * 0.55116 * 19 18 17 21 21 F 1.35103 * 119.85245 * 179.72048 * 20 19 18 22 22 C 1.38696 * 120.29933 * 359.70613 * 20 19 18 23 23 C 1.37773 * 120.14808 * 0.02562 * 22 20 19 24 24 H 1.08998 * 109.46942 * 60.00219 * 1 2 3 25 25 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47012 * 299.99973 * 1 2 3 27 27 H 1.09000 * 109.47375 * 240.00403 * 2 1 3 28 28 H 1.08998 * 109.47208 * 120.00516 * 2 1 3 29 29 H 1.09000 * 109.46591 * 59.99923 * 3 2 1 30 30 H 1.08998 * 109.47426 * 300.00383 * 3 2 1 31 31 H 0.96999 * 120.00009 * 185.00160 * 8 7 5 32 32 H 1.08004 * 119.99400 * 353.79711 * 15 13 4 33 33 H 1.07997 * 119.99493 * 168.72827 * 16 15 13 34 34 H 1.07997 * 120.08007 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.92925 * 180.25382 * 19 18 17 36 36 H 1.08008 * 119.92626 * 180.02562 * 22 20 19 37 37 H 1.07999 * 120.07614 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1882 1.4427 1.1851 6 1 5.0558 0.8114 1.3081 7 6 3.7657 2.2559 2.2315 8 7 2.8159 3.1410 2.0332 9 14 4.5493 2.0890 3.9191 10 1 5.5873 1.0278 3.8801 11 1 5.1754 3.3795 4.3039 12 1 3.5084 1.7275 4.9146 13 6 4.1794 1.4424 -1.1663 14 8 3.5751 1.3418 -2.2187 15 6 5.6364 1.5570 -1.1683 16 6 6.3221 1.4312 -2.3250 17 6 5.6430 0.9373 -3.5322 18 6 4.8274 -0.1978 -3.4651 19 6 4.1900 -0.6522 -4.5988 20 6 4.3644 0.0060 -5.8071 21 9 3.7409 -0.4480 -6.9164 22 6 5.1756 1.1285 -5.8818 23 6 5.8145 1.5967 -4.7545 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 2.5715 3.7571 2.7415 32 1 6.1647 1.7422 -0.2447 33 1 7.3690 1.6934 -2.3633 34 1 4.6944 -0.7139 -2.5258 35 1 3.5570 -1.5257 -4.5476 36 1 5.3068 1.6367 -6.8258 37 1 6.4456 2.4711 -4.8139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491479876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = -48.139071 kcal Electronic energy + Delta-G solvation = -21335.571729 eV Core-core repulsion = 17992.405616 eV Total energy + Delta-G solvation = -3343.166113 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.83490 -40.79248 -39.46141 -37.00001 -34.72534 -34.15440 -33.13576 -31.99296 -30.08991 -27.72455 -26.55000 -24.42763 -23.71214 -22.69194 -21.70817 -20.54412 -18.77692 -18.29016 -18.04116 -17.14600 -16.56987 -16.53940 -16.35512 -15.80211 -15.57860 -15.35323 -14.88005 -14.59500 -14.41941 -14.21858 -13.90546 -13.88890 -13.24623 -13.20900 -13.07257 -12.93681 -12.60376 -12.47260 -12.32357 -11.97841 -11.94908 -11.91340 -11.51759 -11.01219 -10.59713 -10.29802 -9.85710 -9.30593 -8.87387 -8.24373 -6.10671 -0.12745 0.48701 0.93493 1.46896 1.49681 1.61374 2.30109 2.64653 2.83396 3.13155 3.16896 3.38371 3.89249 3.94333 4.02322 4.17907 4.30879 4.37004 4.44262 4.53748 4.60872 4.77935 4.86094 4.98441 5.05735 5.09160 5.10339 5.21551 5.25316 5.25951 5.36054 5.41553 5.46731 5.58317 5.64776 5.83027 6.07528 6.11053 6.47734 7.14373 7.65976 8.10148 8.74460 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.005227 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.581320 B = 5355.461055 C = 6261.846276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.111 3.889 4 N -0.442 5.442 5 C -0.345 4.345 6 H 0.096 0.904 7 C 0.003 3.997 8 N -0.898 5.898 9 Si 0.987 3.013 10 H -0.255 1.255 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.473 3.527 14 O -0.615 6.615 15 C -0.177 4.177 16 C -0.061 4.061 17 C -0.066 4.066 18 C -0.023 4.023 19 C -0.175 4.175 20 C 0.076 3.924 21 F -0.151 7.151 22 C -0.164 4.164 23 C -0.082 4.082 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.027 0.973 31 H 0.273 0.727 32 H 0.139 0.861 33 H 0.171 0.829 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -4.032 -6.027 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C -0.013 4.013 4 N -0.158 5.158 5 C -0.473 4.473 6 H 0.114 0.886 7 C -0.200 4.200 8 N -0.536 5.536 9 Si 0.811 3.189 10 H -0.178 1.178 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.266 3.734 14 O -0.504 6.504 15 C -0.198 4.198 16 C -0.081 4.081 17 C -0.066 4.066 18 C -0.042 4.042 19 C -0.194 4.194 20 C 0.057 3.943 21 F -0.129 7.129 22 C -0.183 4.183 23 C -0.100 4.100 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.188 0.812 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.173 0.827 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.145 -3.997 -6.391 9.126 hybrid contribution -0.327 0.097 0.874 0.938 sum 4.818 -3.900 -5.516 8.298 Atomic orbital electron populations 1.21603 0.93988 1.02169 1.01557 1.21675 0.96942 0.97103 1.00164 1.21492 0.81966 0.96116 1.01681 1.43630 1.05136 1.61938 1.05129 1.19766 1.13151 1.24595 0.89765 0.88608 1.26383 0.96318 0.93725 1.03570 1.69793 1.29846 1.18535 1.35380 0.84957 0.78350 0.78562 0.77076 1.17819 1.20400 1.20698 1.19129 0.89700 0.81054 0.83528 1.90699 1.71261 1.57013 1.31415 1.23221 0.93205 1.03878 0.99464 1.22538 1.00208 0.95330 0.90006 1.19196 0.97879 0.95351 0.94167 1.20873 0.92272 0.94969 0.96052 1.20989 1.03676 1.02761 0.91972 1.17962 0.97193 0.96606 0.82526 1.91431 1.81189 1.88836 1.51483 1.21161 0.99470 0.96496 1.01133 1.21329 0.99071 0.99406 0.90230 0.93162 0.91053 0.92657 0.94265 0.92874 0.88541 0.95415 0.91736 0.84337 0.81228 0.87702 0.84995 0.82691 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.91 71.98 0.71 -3.85 16 2 C -0.12 -5.00 6.26 30.60 0.19 -4.81 16 3 C 0.11 5.44 4.94 86.38 0.43 5.87 16 4 N -0.44 -22.10 2.50 -640.66 -1.60 -23.70 16 5 C -0.34 -16.82 8.15 84.14 0.69 -16.14 16 6 H 0.10 4.41 7.27 -2.91 -0.02 4.39 16 7 C 0.00 0.13 5.22 84.97 0.44 0.57 16 8 N -0.90 -46.68 11.04 21.69 0.24 -46.44 16 9 Si 0.99 37.83 29.57 68.60 2.03 39.86 16 10 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 11 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 12 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 13 C 0.47 22.56 6.73 86.30 0.58 23.14 16 14 O -0.61 -31.04 11.97 -4.58 -0.05 -31.10 16 15 C -0.18 -6.86 9.13 23.59 0.22 -6.65 16 16 C -0.06 -1.90 9.79 23.85 0.23 -1.66 16 17 C -0.07 -2.20 4.40 -20.15 -0.09 -2.29 16 18 C -0.02 -0.84 6.70 22.57 0.15 -0.69 16 19 C -0.18 -5.99 10.01 22.27 0.22 -5.77 16 20 C 0.08 2.46 7.31 22.49 0.16 2.62 16 21 F -0.15 -4.75 17.26 44.97 0.78 -3.97 16 22 C -0.16 -4.62 10.01 22.27 0.22 -4.40 16 23 C -0.08 -2.34 9.79 22.57 0.22 -2.12 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.10 5.05 5.36 -2.39 -0.01 5.04 16 30 H 0.03 1.44 7.50 -2.39 -0.02 1.42 16 31 H 0.27 13.34 8.31 -92.71 -0.77 12.56 16 32 H 0.14 5.10 6.86 -2.91 -0.02 5.08 16 33 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 34 H 0.10 4.07 7.33 -2.91 -0.02 4.05 16 35 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -60.40 317.59 6.84 -53.57 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 1.07 Total: 27.95 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.38 Total: -16.16 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -1.36 Total: -70.14 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.05 Total: -31.10 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.78 Total: -3.97 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -60.40 6.84 -53.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491479876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.426 kcal (2) G-P(sol) polarization free energy of solvation -60.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds