Wall clock time and date at job start Mon Mar 30 2020 01:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46906 * 2 1 4 4 C 1.50697 * 109.47001 * 240.00178 * 2 1 3 5 5 H 1.08004 * 119.99587 * 239.99971 * 4 2 1 6 6 C 1.37871 * 120.00540 * 59.99769 * 4 2 1 7 7 N 1.31524 * 119.99786 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00474 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46710 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46985 * 119.99695 * 8 6 4 11 11 H 1.48487 * 109.47308 * 240.00046 * 8 6 4 12 12 N 1.46489 * 109.46894 * 119.99748 * 2 1 3 13 13 C 1.46501 * 120.00136 * 60.00454 * 12 2 1 14 14 C 1.34780 * 120.00316 * 239.99658 * 12 2 1 15 15 O 1.21699 * 119.99384 * 0.02562 * 14 12 2 16 16 C 1.46422 * 120.00511 * 180.02562 * 14 12 2 17 17 C 1.34811 * 120.00440 * 173.27908 * 16 14 12 18 18 C 1.47212 * 119.99684 * 348.77483 * 17 16 14 19 19 C 1.39851 * 120.15948 * 131.91808 * 18 17 16 20 20 C 1.37881 * 119.87502 * 180.02562 * 19 18 17 21 21 C 1.38382 * 120.20361 * 0.02562 * 20 19 18 22 22 C 1.38601 * 120.31682 * 359.97438 * 21 20 19 23 23 F 1.35100 * 119.93879 * 180.02562 * 22 21 20 24 24 C 1.38136 * 120.11962 * 0.02562 * 22 21 20 25 25 H 1.09001 * 109.47069 * 300.00326 * 1 2 3 26 26 H 1.09005 * 109.47396 * 59.99803 * 1 2 3 27 27 H 1.09002 * 109.47372 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99798 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46797 * 269.99152 * 13 12 2 30 30 H 1.08998 * 109.47446 * 29.99275 * 13 12 2 31 31 H 1.09000 * 109.47595 * 150.00077 * 13 12 2 32 32 H 1.08004 * 120.00040 * 353.27846 * 16 14 12 33 33 H 1.08002 * 120.00304 * 168.76807 * 17 16 14 34 34 H 1.07995 * 120.06271 * 359.74253 * 19 18 17 35 35 H 1.08001 * 119.89818 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.84152 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.10518 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 3.1454 -2.2877 -3.6037 10 1 1.1659 -1.5868 -4.8160 11 1 3.1465 -0.1875 -4.8165 12 7 2.0183 -0.6905 1.1961 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0869 1.1297 1.8908 16 6 3.2817 -0.7259 3.2786 17 6 4.1646 -0.1168 4.0954 18 6 4.8252 1.1274 3.6682 19 6 4.8740 2.2284 4.5291 20 6 5.4938 3.3911 4.1228 21 6 6.0671 3.4718 2.8659 22 6 6.0236 2.3856 2.0061 23 9 6.5862 2.4727 0.7809 24 6 5.4060 1.2143 2.3995 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1614 -3.4845 29 1 0.7376 -2.1443 1.9994 30 1 1.5295 -2.5968 0.4709 31 1 2.4628 -2.5818 1.9864 32 1 2.9347 -1.7231 3.5061 33 1 4.3871 -0.5417 5.0631 34 1 4.4230 2.1696 5.5086 35 1 5.5313 4.2417 4.7872 36 1 6.5507 4.3855 2.5535 37 1 5.3718 0.3683 1.7292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491493577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:26 Heat of formation + Delta-G solvation = -25.525068 kcal Electronic energy + Delta-G solvation = -21453.321459 eV Core-core repulsion = 18111.135962 eV Total energy + Delta-G solvation = -3342.185497 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.46675 -39.56986 -38.23760 -35.42688 -33.53620 -32.80910 -30.29846 -29.98180 -28.85051 -26.10088 -25.22536 -24.10642 -22.33397 -21.83247 -19.90355 -18.18283 -17.23953 -16.36523 -16.33048 -15.93063 -15.86241 -15.19476 -15.09382 -14.37177 -14.26058 -13.77295 -13.64375 -13.10480 -12.81930 -12.51217 -12.37087 -12.33014 -11.98284 -11.59452 -11.56649 -11.39635 -11.04485 -10.83766 -10.82526 -10.68743 -10.24120 -10.16913 -9.70125 -9.17389 -9.07558 -8.43505 -8.37538 -7.97965 -7.52448 -6.06612 -4.14621 0.94159 1.55356 1.99875 3.26520 3.34671 3.37218 3.88705 3.96435 4.03146 4.41272 4.56235 4.84287 5.00204 5.13987 5.24765 5.25735 5.34043 5.45682 5.66206 5.76402 5.96751 6.03340 6.18772 6.23674 6.34566 6.38047 6.45580 6.56563 6.70302 6.77125 6.85586 7.07897 7.18580 7.44581 7.55832 7.72589 8.02800 8.20861 8.54420 8.84398 9.07995 9.52036 10.98722 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.005759 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.569038 B = 4860.657050 C = 5725.051998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.586 5.586 13 C 0.082 3.918 14 C 0.521 3.479 15 O -0.539 6.539 16 C -0.186 4.186 17 C -0.055 4.055 18 C -0.024 4.024 19 C -0.119 4.119 20 C -0.104 4.104 21 C -0.153 4.153 22 C 0.093 3.907 23 F -0.142 7.142 24 C -0.077 4.077 25 H 0.010 0.990 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.286 -1.871 14.349 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.316 5.316 13 C -0.062 4.062 14 C 0.310 3.690 15 O -0.419 6.419 16 C -0.207 4.207 17 C -0.075 4.075 18 C -0.025 4.025 19 C -0.137 4.137 20 C -0.122 4.122 21 C -0.171 4.171 22 C 0.074 3.926 23 F -0.121 7.121 24 C -0.096 4.096 25 H 0.029 0.971 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.335 -1.154 13.998 15.408 hybrid contribution 0.122 -0.629 -1.202 1.362 sum 6.457 -1.783 12.796 14.443 Atomic orbital electron populations 1.22076 0.98241 0.99328 1.00753 1.18938 0.90848 0.94595 0.79904 0.91843 1.21338 1.31748 1.12967 0.90279 0.92246 1.24894 0.94940 0.94972 0.98977 1.69897 1.36402 1.22592 1.23634 0.86451 0.78594 0.79603 0.82818 1.19814 1.20929 1.20880 1.48221 1.48639 1.11487 1.23262 1.21638 0.98738 0.83431 1.02377 1.18374 0.80185 0.87075 0.83393 1.90842 1.58009 1.16632 1.76445 1.23441 1.00233 1.00242 0.96805 1.22229 0.94264 0.93140 0.97887 1.18620 0.96643 0.94115 0.93083 1.21136 1.00206 0.92847 0.99520 1.20721 0.98244 0.97828 0.95450 1.21092 1.03360 0.97907 0.94787 1.17499 0.98553 0.95472 0.81106 1.91490 1.82924 1.96746 1.40952 1.21096 0.95826 0.97380 0.95305 0.97082 0.88884 0.95215 0.92748 0.93896 0.90089 0.92690 0.85003 0.84718 0.85822 0.85568 0.85426 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 2 C 0.26 6.63 2.64 -69.09 -0.18 6.45 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.52 -14.27 7.99 -34.44 -0.28 -14.54 16 5 H 0.06 1.59 7.33 -52.48 -0.38 1.21 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.59 -12.50 2.75 -176.91 -0.49 -12.99 16 13 C 0.08 1.36 9.10 59.85 0.54 1.91 16 14 C 0.52 10.66 6.82 -12.96 -0.09 10.58 16 15 O -0.54 -12.87 11.80 5.19 0.06 -12.81 16 16 C -0.19 -2.76 9.05 -37.50 -0.34 -3.10 16 17 C -0.06 -0.72 9.78 -37.15 -0.36 -1.09 16 18 C -0.02 -0.38 4.34 -105.07 -0.46 -0.83 16 19 C -0.12 -1.59 9.79 -39.11 -0.38 -1.97 16 20 C -0.10 -1.35 10.03 -39.66 -0.40 -1.75 16 21 C -0.15 -2.26 10.02 -39.39 -0.39 -2.65 16 22 C 0.09 1.65 7.29 -39.48 -0.29 1.36 16 23 F -0.14 -2.72 17.26 2.25 0.04 -2.68 16 24 C -0.08 -1.38 6.76 -39.04 -0.26 -1.64 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 31 H 0.05 0.73 6.19 -51.93 -0.32 0.41 16 32 H 0.13 1.52 6.34 -52.48 -0.33 1.19 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.13 2.43 7.45 -52.49 -0.39 2.04 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -32.05 313.65 -7.24 -39.29 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.54 Total: 1.79 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -2.65 Total: -8.79 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.14 Total: -37.80 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.06 Total: -12.81 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.05 -7.24 -39.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491493577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.768 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds