Wall clock time and date at job start Mon Mar 30 2020 01:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46906 * 2 1 4 4 C 1.50697 * 109.47001 * 240.00178 * 2 1 3 5 5 H 1.08004 * 119.99587 * 239.99971 * 4 2 1 6 6 C 1.37871 * 120.00540 * 59.99769 * 4 2 1 7 7 N 1.31524 * 119.99786 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00474 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46710 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46985 * 119.99695 * 8 6 4 11 11 H 1.48487 * 109.47308 * 240.00046 * 8 6 4 12 12 N 1.46489 * 109.46894 * 119.99748 * 2 1 3 13 13 C 1.46501 * 120.00136 * 60.00454 * 12 2 1 14 14 C 1.34780 * 120.00316 * 239.99658 * 12 2 1 15 15 O 1.21699 * 119.99384 * 0.02562 * 14 12 2 16 16 C 1.46422 * 120.00511 * 180.02562 * 14 12 2 17 17 C 1.34811 * 120.00440 * 173.27908 * 16 14 12 18 18 C 1.47212 * 119.99684 * 348.77483 * 17 16 14 19 19 C 1.39851 * 120.15948 * 131.91808 * 18 17 16 20 20 C 1.37881 * 119.87502 * 180.02562 * 19 18 17 21 21 C 1.38382 * 120.20361 * 0.02562 * 20 19 18 22 22 C 1.38601 * 120.31682 * 359.97438 * 21 20 19 23 23 F 1.35100 * 119.93879 * 180.02562 * 22 21 20 24 24 C 1.38136 * 120.11962 * 0.02562 * 22 21 20 25 25 H 1.09001 * 109.47069 * 300.00326 * 1 2 3 26 26 H 1.09005 * 109.47396 * 59.99803 * 1 2 3 27 27 H 1.09002 * 109.47372 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99798 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46797 * 269.99152 * 13 12 2 30 30 H 1.08998 * 109.47446 * 29.99275 * 13 12 2 31 31 H 1.09000 * 109.47595 * 150.00077 * 13 12 2 32 32 H 1.08004 * 120.00040 * 353.27846 * 16 14 12 33 33 H 1.08002 * 120.00304 * 168.76807 * 17 16 14 34 34 H 1.07995 * 120.06271 * 359.74253 * 19 18 17 35 35 H 1.08001 * 119.89818 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.84152 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.10518 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 3.1454 -2.2877 -3.6037 10 1 1.1659 -1.5868 -4.8160 11 1 3.1465 -0.1875 -4.8165 12 7 2.0183 -0.6905 1.1961 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0869 1.1297 1.8908 16 6 3.2817 -0.7259 3.2786 17 6 4.1646 -0.1168 4.0954 18 6 4.8252 1.1274 3.6682 19 6 4.8740 2.2284 4.5291 20 6 5.4938 3.3911 4.1228 21 6 6.0671 3.4718 2.8659 22 6 6.0236 2.3856 2.0061 23 9 6.5862 2.4727 0.7809 24 6 5.4060 1.2143 2.3995 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1614 -3.4845 29 1 0.7376 -2.1443 1.9994 30 1 1.5295 -2.5968 0.4709 31 1 2.4628 -2.5818 1.9864 32 1 2.9347 -1.7231 3.5061 33 1 4.3871 -0.5417 5.0631 34 1 4.4230 2.1696 5.5086 35 1 5.5313 4.2417 4.7872 36 1 6.5507 4.3855 2.5535 37 1 5.3718 0.3683 1.7292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491493577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:26 Heat of formation + Delta-G solvation = -44.591288 kcal Electronic energy + Delta-G solvation = -21454.148232 eV Core-core repulsion = 18111.135962 eV Total energy + Delta-G solvation = -3343.012270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.87396 -40.99467 -39.53657 -37.14278 -34.89232 -34.61353 -31.72517 -31.42182 -30.25800 -27.53858 -27.33481 -25.43944 -23.61596 -23.21735 -21.49641 -19.56994 -18.74130 -18.29094 -17.75647 -17.20035 -17.11143 -16.87313 -16.57936 -15.98959 -15.88657 -15.06732 -14.85700 -14.61703 -14.29623 -14.11005 -13.81812 -13.61763 -13.49507 -13.21016 -13.03334 -12.77389 -12.73203 -12.64788 -12.58096 -12.21979 -12.13357 -11.98975 -11.19633 -10.86679 -10.64002 -10.46891 -9.64190 -9.21542 -9.18487 -8.17329 -6.33795 -0.20884 0.35368 0.85877 1.36527 1.38787 1.49679 2.31693 2.50888 2.57494 2.77000 3.10536 3.38536 3.73296 3.87565 3.95566 4.12216 4.27724 4.40765 4.51807 4.61761 4.73280 4.76700 4.87128 4.90433 5.03405 5.04450 5.11929 5.15212 5.21555 5.31050 5.44371 5.47763 5.55459 5.66720 5.70196 6.02989 6.06200 6.15358 6.75238 6.90774 7.32310 7.55169 8.87017 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.005759 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.569038 B = 4860.657050 C = 5725.051998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.263 3.737 3 H 0.005 0.995 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.271 1.271 11 H -0.287 1.287 12 N -0.600 5.600 13 C 0.079 3.921 14 C 0.508 3.492 15 O -0.587 6.587 16 C -0.204 4.204 17 C -0.026 4.026 18 C -0.044 4.044 19 C -0.112 4.112 20 C -0.098 4.098 21 C -0.158 4.158 22 C 0.051 3.949 23 F -0.163 7.163 24 C -0.102 4.102 25 H 0.018 0.982 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.264 0.736 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.146 0.854 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 -3.253 17.379 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.161 3.839 3 H 0.023 0.977 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.189 1.189 10 H -0.196 1.196 11 H -0.214 1.214 12 N -0.329 5.329 13 C -0.063 4.063 14 C 0.299 3.701 15 O -0.470 6.470 16 C -0.224 4.224 17 C -0.045 4.045 18 C -0.044 4.044 19 C -0.129 4.129 20 C -0.115 4.115 21 C -0.177 4.177 22 C 0.032 3.968 23 F -0.143 7.143 24 C -0.121 4.121 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.190 0.810 33 H 0.209 0.791 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.164 0.836 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.512 -2.579 17.054 18.437 hybrid contribution 0.120 -0.094 -2.051 2.056 sum 6.632 -2.673 15.003 16.620 Atomic orbital electron populations 1.21846 0.97272 0.99996 0.99720 1.18449 0.91493 0.92090 0.81877 0.97683 1.21604 1.31617 1.12906 0.91240 0.92273 1.25749 0.95134 0.95673 1.02076 1.70041 1.37486 1.23946 1.24289 0.85433 0.78293 0.78485 0.78979 1.18864 1.19649 1.21369 1.48210 1.49196 1.13315 1.22227 1.21870 1.01315 0.80673 1.02453 1.19392 0.79179 0.86915 0.84578 1.90818 1.59379 1.18999 1.77802 1.23385 1.02400 1.01992 0.94597 1.22800 0.91531 0.91093 0.99100 1.19050 0.96611 0.96370 0.92344 1.21667 0.98835 0.91840 1.00602 1.21270 0.96306 0.99128 0.94841 1.21430 1.03441 0.97512 0.95267 1.18012 1.00458 0.97072 0.81282 1.91419 1.83504 1.96929 1.42399 1.21054 0.97836 0.96737 0.96502 0.96285 0.91649 0.93472 0.92705 0.91593 0.91714 0.88852 0.80991 0.79051 0.81722 0.81400 0.83608 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.97 71.98 0.65 -5.82 16 2 C 0.26 14.16 2.64 44.25 0.12 14.28 16 3 H 0.01 0.34 6.90 -2.39 -0.02 0.32 16 4 C -0.54 -30.04 7.99 25.60 0.20 -29.84 16 5 H 0.06 3.24 7.33 -2.91 -0.02 3.21 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.77 11.32 21.45 0.24 -54.52 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 9 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 N -0.60 -25.82 2.75 -831.84 -2.29 -28.11 16 13 C 0.08 2.48 9.10 127.77 1.16 3.64 16 14 C 0.51 20.95 6.82 86.37 0.59 21.53 16 15 O -0.59 -29.33 11.80 -4.35 -0.05 -29.38 16 16 C -0.20 -5.47 9.05 23.62 0.21 -5.25 16 17 C -0.03 -0.58 9.78 23.84 0.23 -0.35 16 18 C -0.04 -1.27 4.34 -20.15 -0.09 -1.36 16 19 C -0.11 -2.59 9.79 22.58 0.22 -2.37 16 20 C -0.10 -2.24 10.03 22.22 0.22 -2.02 16 21 C -0.16 -4.61 10.02 22.39 0.22 -4.38 16 22 C 0.05 1.90 7.29 22.33 0.16 2.07 16 23 F -0.16 -6.79 17.26 44.97 0.78 -6.02 16 24 C -0.10 -3.82 6.76 22.62 0.15 -3.67 16 25 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 3.62 6.07 -2.38 -0.01 3.61 16 27 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 28 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.23 7.02 -2.39 -0.02 2.22 16 31 H 0.09 2.17 6.19 -2.39 -0.01 2.16 16 32 H 0.17 3.13 6.34 -2.91 -0.02 3.11 16 33 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.10 4.05 7.45 -2.91 -0.02 4.03 16 Total: -1.00 -77.23 313.65 6.29 -70.94 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.08 Total: 12.88 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 4.51 Total: -12.36 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -2.05 Total: -82.63 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.38 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.78 Total: -6.02 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -77.23 6.29 -70.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491493577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.350 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds