Wall clock time and date at job start Mon Mar 30 2020 01:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47568 * 2 1 4 4 C 1.50698 * 109.47218 * 120.00375 * 2 1 3 5 5 H 1.08004 * 120.00353 * 119.99475 * 4 2 1 6 6 C 1.37879 * 119.99600 * 299.99948 * 4 2 1 7 7 N 1.31508 * 120.00299 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99834 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46812 * 60.00064 * 8 6 4 10 10 H 1.48494 * 109.47235 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47322 * 300.00100 * 8 6 4 12 12 N 1.46506 * 109.47042 * 239.99852 * 2 1 3 13 13 C 1.46493 * 120.00083 * 300.00554 * 12 2 1 14 14 C 1.34776 * 119.99858 * 120.00457 * 12 2 1 15 15 O 1.21710 * 119.99980 * 359.97438 * 14 12 2 16 16 C 1.46341 * 120.00310 * 180.02562 * 14 12 2 17 17 C 1.34885 * 120.00471 * 173.22939 * 16 14 12 18 18 C 1.47113 * 119.99622 * 349.03326 * 17 16 14 19 19 C 1.39904 * 120.14524 * 316.08282 * 18 17 16 20 20 C 1.37782 * 119.85291 * 179.74678 * 19 18 17 21 21 C 1.38691 * 120.14174 * 0.55974 * 20 19 18 22 22 F 1.35099 * 119.85247 * 179.72117 * 21 20 19 23 23 C 1.38681 * 120.29200 * 359.69310 * 21 20 19 24 24 C 1.37788 * 120.14643 * 0.02562 * 23 21 20 25 25 H 1.08991 * 109.47412 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47153 * 300.00251 * 1 2 3 27 27 H 1.09002 * 109.46876 * 59.99725 * 1 2 3 28 28 H 0.97002 * 120.00453 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47534 * 89.99660 * 13 12 2 30 30 H 1.09003 * 109.47214 * 209.99707 * 13 12 2 31 31 H 1.09002 * 109.47137 * 329.99994 * 13 12 2 32 32 H 1.08001 * 119.99755 * 353.22928 * 16 14 12 33 33 H 1.07999 * 120.00424 * 169.03724 * 17 16 14 34 34 H 1.08001 * 120.06683 * 0.02562 * 19 18 17 35 35 H 1.07994 * 119.93107 * 180.25393 * 20 19 18 36 36 H 1.08001 * 119.92560 * 180.02562 * 23 21 20 37 37 H 1.07994 * 120.07057 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4201 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.7932 -0.0357 -2.0833 15 8 3.0870 1.1296 -1.8909 16 6 3.2806 -0.7253 -3.2785 17 6 3.9399 -0.0369 -4.2328 18 6 3.9614 1.4337 -4.1966 19 6 2.7897 2.1469 -3.9212 20 6 2.8178 3.5239 -3.8836 21 6 4.0016 4.2033 -4.1296 22 9 4.0213 5.5537 -4.0968 23 6 5.1654 3.5025 -4.4085 24 6 5.1522 2.1251 -4.4433 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7089 1.1613 3.4844 29 1 0.7375 -2.1443 -1.9994 30 1 2.4628 -2.5819 -1.9865 31 1 1.5293 -2.5968 -0.4709 32 1 3.1124 -1.7856 -3.3964 33 1 4.4519 -0.5651 -5.0235 34 1 1.8663 1.6190 -3.7340 35 1 1.9150 4.0756 -3.6671 36 1 6.0841 4.0375 -4.5987 37 1 6.0592 1.5806 -4.6602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491493590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:30 Heat of formation + Delta-G solvation = -23.754082 kcal Electronic energy + Delta-G solvation = -21228.832123 eV Core-core repulsion = 17886.723422 eV Total energy + Delta-G solvation = -3342.108701 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.67502 -39.65217 -38.22764 -35.43216 -33.44270 -32.80264 -30.91180 -29.84900 -28.57396 -26.11608 -25.24338 -23.90119 -22.70611 -21.77527 -19.89305 -18.05416 -17.47693 -16.99236 -16.40591 -15.86298 -15.59794 -15.34402 -14.81345 -14.48572 -14.09689 -13.73847 -13.53573 -13.34800 -12.99973 -12.71357 -12.48842 -12.34995 -12.01789 -11.71578 -11.54458 -11.22344 -11.04819 -10.86754 -10.83528 -10.69727 -10.28488 -10.17768 -9.61229 -9.25533 -9.06588 -8.71264 -8.43752 -7.76554 -7.54606 -6.08274 -4.16485 0.88105 1.57694 1.99866 3.26885 3.32415 3.33864 3.88073 3.94041 4.03661 4.39435 4.49935 4.83771 4.93585 5.06652 5.15816 5.23110 5.41872 5.44780 5.66179 5.78509 6.00587 6.06550 6.08672 6.27823 6.30137 6.35538 6.40750 6.55344 6.72453 6.76234 6.83275 7.04782 7.13832 7.41867 7.53271 7.70309 8.00439 8.18785 8.51909 8.82031 9.05672 9.50036 10.96910 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.004815 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.964025 B = 5814.339073 C = 6427.400265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.081 3.919 14 C 0.522 3.478 15 O -0.540 6.540 16 C -0.194 4.194 17 C -0.049 4.049 18 C -0.071 4.071 19 C -0.001 4.001 20 C -0.164 4.164 21 C 0.101 3.899 22 F -0.146 7.146 23 C -0.170 4.170 24 C -0.078 4.078 25 H 0.029 0.971 26 H 0.093 0.907 27 H 0.010 0.990 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -2.093 -14.898 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.062 4.062 14 C 0.311 3.689 15 O -0.421 6.421 16 C -0.215 4.215 17 C -0.069 4.069 18 C -0.071 4.071 19 C -0.019 4.019 20 C -0.182 4.182 21 C 0.082 3.918 22 F -0.125 7.125 23 C -0.189 4.189 24 C -0.096 4.096 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.871 -1.326 -14.585 15.149 hybrid contribution 0.291 -0.490 1.120 1.257 sum 4.162 -1.816 -13.465 14.210 Atomic orbital electron populations 1.22074 0.98180 0.99358 1.00742 1.18942 0.90819 0.94597 0.79939 0.91793 1.21273 1.31916 1.13035 0.90335 0.92351 1.24888 0.94921 0.94964 0.98956 1.69862 1.36263 1.22535 1.23886 0.86558 0.79250 0.79562 0.82029 1.20265 1.21150 1.20224 1.48251 1.47954 1.11628 1.23566 1.21653 0.98790 0.83423 1.02381 1.18346 0.79696 0.86822 0.84008 1.90829 1.58244 1.16275 1.76763 1.23394 1.01949 1.00817 0.95334 1.22212 0.95141 0.92242 0.97259 1.18893 0.93757 0.92940 1.01523 1.20940 0.97866 0.92547 0.90577 1.20919 0.97276 0.95094 1.04956 1.17828 0.95156 0.76425 1.02402 1.91458 1.97316 1.29631 1.94112 1.20830 0.97121 0.94812 1.06162 1.20945 0.97166 0.92994 0.98464 0.95203 0.88867 0.97095 0.92611 0.93836 0.92602 0.90149 0.85073 0.85017 0.85850 0.85167 0.85329 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.26 6.48 2.64 -69.08 -0.18 6.30 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.15 7.99 -34.44 -0.28 -14.42 16 5 H 0.06 1.54 7.33 -52.48 -0.38 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.58 -12.14 2.75 -176.93 -0.49 -12.62 16 13 C 0.08 1.32 9.19 59.84 0.55 1.87 16 14 C 0.52 10.38 6.66 -13.00 -0.09 10.29 16 15 O -0.54 -12.49 11.48 5.18 0.06 -12.43 16 16 C -0.19 -2.81 9.14 -37.51 -0.34 -3.15 16 17 C -0.05 -0.62 9.81 -37.17 -0.36 -0.98 16 18 C -0.07 -1.06 4.53 -105.05 -0.48 -1.53 16 19 C 0.00 -0.02 6.60 -39.12 -0.26 -0.27 16 20 C -0.16 -2.63 10.01 -39.58 -0.40 -3.02 16 21 C 0.10 1.58 7.31 -39.25 -0.29 1.29 16 22 F -0.15 -2.30 17.26 2.25 0.04 -2.26 16 23 C -0.17 -2.36 10.01 -39.58 -0.40 -2.76 16 24 C -0.08 -1.04 9.79 -39.13 -0.38 -1.42 16 25 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.72 6.02 -51.93 -0.31 0.41 16 31 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 32 H 0.13 1.49 6.15 -52.49 -0.32 1.17 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 2.05 7.03 -52.49 -0.37 1.68 16 35 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -31.04 312.61 -7.23 -38.26 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.50 Total: 2.06 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.66 Total: -9.23 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.14 Total: -37.10 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.06 Total: -12.43 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.04 -7.23 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491493590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.509 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds