Wall clock time and date at job start Mon Mar 30 2020 01:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47568 * 2 1 4 4 C 1.50698 * 109.47218 * 120.00375 * 2 1 3 5 5 H 1.08004 * 120.00353 * 119.99475 * 4 2 1 6 6 C 1.37879 * 119.99600 * 299.99948 * 4 2 1 7 7 N 1.31508 * 120.00299 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99834 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46812 * 60.00064 * 8 6 4 10 10 H 1.48494 * 109.47235 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47322 * 300.00100 * 8 6 4 12 12 N 1.46506 * 109.47042 * 239.99852 * 2 1 3 13 13 C 1.46493 * 120.00083 * 300.00554 * 12 2 1 14 14 C 1.34776 * 119.99858 * 120.00457 * 12 2 1 15 15 O 1.21710 * 119.99980 * 359.97438 * 14 12 2 16 16 C 1.46341 * 120.00310 * 180.02562 * 14 12 2 17 17 C 1.34885 * 120.00471 * 173.22939 * 16 14 12 18 18 C 1.47113 * 119.99622 * 349.03326 * 17 16 14 19 19 C 1.39904 * 120.14524 * 316.08282 * 18 17 16 20 20 C 1.37782 * 119.85291 * 179.74678 * 19 18 17 21 21 C 1.38691 * 120.14174 * 0.55974 * 20 19 18 22 22 F 1.35099 * 119.85247 * 179.72117 * 21 20 19 23 23 C 1.38681 * 120.29200 * 359.69310 * 21 20 19 24 24 C 1.37788 * 120.14643 * 0.02562 * 23 21 20 25 25 H 1.08991 * 109.47412 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47153 * 300.00251 * 1 2 3 27 27 H 1.09002 * 109.46876 * 59.99725 * 1 2 3 28 28 H 0.97002 * 120.00453 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47534 * 89.99660 * 13 12 2 30 30 H 1.09003 * 109.47214 * 209.99707 * 13 12 2 31 31 H 1.09002 * 109.47137 * 329.99994 * 13 12 2 32 32 H 1.08001 * 119.99755 * 353.22928 * 16 14 12 33 33 H 1.07999 * 120.00424 * 169.03724 * 17 16 14 34 34 H 1.08001 * 120.06683 * 0.02562 * 19 18 17 35 35 H 1.07994 * 119.93107 * 180.25393 * 20 19 18 36 36 H 1.08001 * 119.92560 * 180.02562 * 23 21 20 37 37 H 1.07994 * 120.07057 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8270 -0.4201 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0931 -1.4281 14 6 2.7932 -0.0357 -2.0833 15 8 3.0870 1.1296 -1.8909 16 6 3.2806 -0.7253 -3.2785 17 6 3.9399 -0.0369 -4.2328 18 6 3.9614 1.4337 -4.1966 19 6 2.7897 2.1469 -3.9212 20 6 2.8178 3.5239 -3.8836 21 6 4.0016 4.2033 -4.1296 22 9 4.0213 5.5537 -4.0968 23 6 5.1654 3.5025 -4.4085 24 6 5.1522 2.1251 -4.4433 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7089 1.1613 3.4844 29 1 0.7375 -2.1443 -1.9994 30 1 2.4628 -2.5819 -1.9865 31 1 1.5293 -2.5968 -0.4709 32 1 3.1124 -1.7856 -3.3964 33 1 4.4519 -0.5651 -5.0235 34 1 1.8663 1.6190 -3.7340 35 1 1.9150 4.0756 -3.6671 36 1 6.0841 4.0375 -4.5987 37 1 6.0592 1.5806 -4.6602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491493590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:30 Heat of formation + Delta-G solvation = -41.325667 kcal Electronic energy + Delta-G solvation = -21229.594084 eV Core-core repulsion = 17886.723422 eV Total energy + Delta-G solvation = -3342.870662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.89503 -41.03377 -39.51706 -37.10913 -34.85399 -34.48384 -32.05282 -31.59328 -29.87534 -27.51258 -27.30763 -25.22807 -23.88064 -23.18749 -21.44554 -19.39819 -18.73257 -18.50802 -18.16042 -17.19878 -17.12604 -16.57736 -16.41398 -16.01400 -15.55199 -14.93837 -14.82621 -14.60250 -14.41056 -14.16729 -13.99020 -13.70847 -13.48465 -13.24723 -13.00225 -12.85769 -12.74930 -12.59267 -12.37075 -12.18984 -12.12013 -11.96595 -11.19779 -10.75940 -10.60618 -10.44745 -9.92390 -9.18150 -8.96530 -8.14417 -6.31226 -0.26417 0.42852 0.85878 1.40498 1.42885 1.50275 2.33558 2.54168 2.60409 2.77575 3.13318 3.33952 3.79131 3.82790 3.94897 3.98531 4.34025 4.39409 4.52724 4.66704 4.75424 4.79201 4.89323 4.98675 4.99176 5.07038 5.07895 5.17311 5.21096 5.28208 5.42629 5.48530 5.59392 5.68672 5.74034 6.00231 6.08136 6.17538 6.77534 6.93094 7.34862 7.57508 8.89270 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.004815 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.964025 B = 5814.339073 C = 6427.400265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.263 3.737 3 H 0.008 0.992 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.597 5.597 13 C 0.078 3.922 14 C 0.510 3.490 15 O -0.587 6.587 16 C -0.209 4.209 17 C -0.020 4.020 18 C -0.087 4.087 19 C -0.018 4.018 20 C -0.185 4.185 21 C 0.080 3.920 22 F -0.152 7.152 23 C -0.169 4.169 24 C -0.072 4.072 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.018 0.982 28 H 0.264 0.736 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.171 0.829 33 H 0.187 0.813 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.156 0.844 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -4.737 -16.468 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.161 3.839 3 H 0.026 0.974 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.326 5.326 13 C -0.064 4.064 14 C 0.302 3.698 15 O -0.470 6.470 16 C -0.229 4.229 17 C -0.039 4.039 18 C -0.088 4.088 19 C -0.037 4.037 20 C -0.204 4.204 21 C 0.061 3.939 22 F -0.131 7.131 23 C -0.187 4.187 24 C -0.090 4.090 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.188 0.812 33 H 0.204 0.796 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.174 0.826 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.742 -4.008 -16.185 17.635 hybrid contribution -0.268 0.423 1.533 1.613 sum 5.474 -3.585 -14.651 16.046 Atomic orbital electron populations 1.21847 0.97393 0.99918 0.99696 1.18458 0.91363 0.92224 0.81894 0.97395 1.21570 1.31767 1.13023 0.91229 0.92108 1.25747 0.95112 0.95645 1.02084 1.70020 1.37427 1.23958 1.24402 0.85527 0.78369 0.79063 0.78163 1.20330 1.21051 1.18533 1.48228 1.48513 1.13411 1.22496 1.21884 1.01319 0.80746 1.02439 1.19327 0.78706 0.86546 0.85243 1.90813 1.59744 1.18465 1.78005 1.23336 1.03488 1.02389 0.93692 1.22735 0.92947 0.90867 0.97394 1.19316 0.93668 0.94695 1.01094 1.20938 0.98412 0.92633 0.91689 1.21039 0.97830 0.95587 1.05987 1.18075 0.95852 0.76416 1.03570 1.91436 1.97370 1.29971 1.94285 1.21226 0.97271 0.95447 1.04774 1.21410 0.97942 0.92892 0.96778 0.93605 0.91694 0.96301 0.92736 0.91832 0.88607 0.91739 0.81202 0.79568 0.87370 0.85629 0.82603 0.81464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.97 71.98 0.65 -5.69 16 2 C 0.26 13.72 2.64 44.24 0.12 13.84 16 3 H 0.01 0.51 6.90 -2.39 -0.02 0.49 16 4 C -0.54 -29.33 7.99 25.60 0.20 -29.13 16 5 H 0.06 3.21 7.33 -2.91 -0.02 3.18 16 6 C 0.01 0.75 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.79 11.32 21.45 0.24 -53.55 16 8 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 12 N -0.60 -24.71 2.75 -831.91 -2.29 -27.00 16 13 C 0.08 2.36 9.19 127.77 1.17 3.53 16 14 C 0.51 20.09 6.66 86.35 0.57 20.67 16 15 O -0.59 -28.05 11.48 -4.38 -0.05 -28.10 16 16 C -0.21 -5.34 9.14 23.61 0.22 -5.12 16 17 C -0.02 -0.43 9.81 23.83 0.23 -0.20 16 18 C -0.09 -2.44 4.53 -20.14 -0.09 -2.53 16 19 C -0.02 -0.61 6.60 22.57 0.15 -0.46 16 20 C -0.19 -6.29 10.01 22.27 0.22 -6.07 16 21 C 0.08 2.53 7.31 22.48 0.16 2.70 16 22 F -0.15 -4.87 17.26 44.97 0.78 -4.10 16 23 C -0.17 -4.38 10.01 22.27 0.22 -4.16 16 24 C -0.07 -1.72 9.79 22.56 0.22 -1.50 16 25 H 0.04 2.02 7.67 -2.39 -0.02 2.00 16 26 H 0.06 3.54 6.07 -2.39 -0.01 3.52 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 2.09 6.02 -2.39 -0.01 2.07 16 31 H 0.06 2.14 7.02 -2.39 -0.02 2.13 16 32 H 0.17 2.94 6.15 -2.91 -0.02 2.92 16 33 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.11 3.81 7.03 -2.91 -0.02 3.79 16 35 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -72.39 312.61 6.29 -66.10 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.08 Total: 14.21 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.50 Total: -12.92 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -2.05 Total: -80.55 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.78 Total: -4.10 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.39 6.29 -66.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491493590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.774 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds