Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47302 * 2 1 4 4 C 1.46501 * 120.00235 * 89.99746 * 3 2 1 5 5 C 1.50705 * 109.47028 * 89.99715 * 4 3 2 6 6 H 1.08000 * 119.99692 * 0.02562 * 5 4 3 7 7 C 1.37869 * 119.99932 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00311 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00135 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47441 * 119.99823 * 9 7 5 12 12 H 1.48498 * 109.47348 * 240.00191 * 9 7 5 13 13 C 1.34776 * 120.00208 * 269.99980 * 3 2 1 14 14 O 1.21693 * 120.00258 * 180.02562 * 13 3 2 15 15 C 1.46431 * 119.99733 * 359.97438 * 13 3 2 16 16 C 1.34801 * 120.00025 * 173.23284 * 15 13 3 17 17 C 1.47210 * 120.00232 * 349.02619 * 16 15 13 18 18 C 1.39863 * 120.15863 * 136.37340 * 17 16 15 19 19 C 1.37878 * 119.87775 * 179.97438 * 18 17 16 20 20 C 1.38385 * 120.19683 * 359.97438 * 19 18 17 21 21 C 1.38593 * 120.32341 * 0.02562 * 20 19 18 22 22 F 1.35101 * 119.94158 * 180.02562 * 21 20 19 23 23 C 1.38148 * 120.11855 * 359.74375 * 21 20 19 24 24 H 1.08999 * 109.47048 * 300.00050 * 1 2 3 25 25 H 1.09003 * 109.46773 * 59.99863 * 1 2 3 26 26 H 1.09002 * 109.46851 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46918 * 239.99474 * 2 1 3 28 28 H 1.09003 * 109.46773 * 120.00137 * 2 1 3 29 29 H 1.08994 * 109.47642 * 209.99912 * 4 3 2 30 30 H 1.09001 * 109.47208 * 330.00322 * 4 3 2 31 31 H 0.97004 * 120.00586 * 179.97438 * 8 7 5 32 32 H 1.08002 * 120.00381 * 353.22691 * 15 13 3 33 33 H 1.08001 * 120.00166 * 169.03016 * 16 15 13 34 34 H 1.07995 * 120.05790 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.90369 * 180.02562 * 19 18 17 36 36 H 1.08007 * 119.83738 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.09930 * 180.24951 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6859 1.8349 1.7038 6 1 4.3429 1.2307 1.0958 7 6 4.1494 2.3904 2.8774 8 7 3.3495 3.1266 3.6175 9 14 5.9138 2.0974 3.4165 10 1 6.6015 1.2421 2.4160 11 1 6.6212 3.3986 3.5241 12 1 5.9218 1.4189 4.7374 13 6 2.2431 2.0165 -1.1672 14 8 2.6492 3.1637 -1.1672 15 6 1.9995 1.3260 -2.4353 16 6 2.0922 2.0006 -3.5987 17 6 2.1973 3.4690 -3.5918 18 6 3.1124 4.1119 -4.4316 19 6 3.2057 5.4874 -4.4209 20 6 2.3962 6.2334 -3.5822 21 6 1.4865 5.6049 -2.7466 22 9 0.6997 6.3407 -1.9313 23 6 1.3787 4.2276 -2.7501 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0957 3.1410 1.1384 30 1 1.5818 1.6877 2.0284 31 1 3.6755 3.5171 4.4434 32 1 1.7458 0.2763 -2.4386 33 1 2.0892 1.4639 -4.5359 34 1 3.7443 3.5319 -5.0879 35 1 3.9119 5.9843 -5.0695 36 1 2.4738 7.3107 -3.5788 37 1 0.6669 3.7384 -2.1018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492238192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -27.783102 kcal Electronic energy + Delta-G solvation = -21363.026734 eV Core-core repulsion = 18020.743321 eV Total energy + Delta-G solvation = -3342.283412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.47626 -39.61754 -38.21706 -35.38401 -33.59628 -32.71406 -30.30892 -30.06316 -29.60028 -27.15874 -24.25865 -23.00823 -22.67882 -22.13672 -20.49343 -18.15618 -17.28201 -16.43179 -16.32711 -15.92834 -15.87309 -15.24059 -15.16781 -14.31776 -14.26909 -13.85889 -13.52932 -13.38412 -13.10048 -12.78097 -12.47080 -12.28467 -11.98953 -11.94867 -11.64171 -11.48040 -11.21053 -10.89029 -10.84839 -10.75291 -10.51610 -10.14483 -9.70715 -9.62001 -9.06621 -8.42868 -8.37196 -7.92134 -7.57377 -6.03167 -4.07867 0.91283 1.56458 2.06101 3.30019 3.37695 3.41541 3.89298 3.95943 4.03496 4.46024 4.56453 4.84415 4.97956 5.09572 5.24204 5.29936 5.31223 5.35555 5.52412 5.63189 5.65088 5.74935 5.97889 6.03644 6.19757 6.23040 6.26290 6.34846 6.45135 6.49623 6.57689 6.72721 7.10484 7.18971 7.46145 7.55861 7.93316 8.24418 8.43278 8.91613 9.11104 9.57259 11.04833 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.005877 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.355885 B = 4763.186309 C = 5514.878233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.523 3.477 14 O -0.528 6.528 15 C -0.189 4.189 16 C -0.055 4.055 17 C -0.032 4.032 18 C -0.116 4.116 19 C -0.108 4.108 20 C -0.149 4.149 21 C 0.087 3.913 22 F -0.144 7.144 23 C -0.065 4.065 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 -3.041 -15.819 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.319 5.319 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.312 3.688 14 O -0.407 6.407 15 C -0.209 4.209 16 C -0.075 4.075 17 C -0.032 4.032 18 C -0.134 4.134 19 C -0.126 4.126 20 C -0.168 4.168 21 C 0.067 3.933 22 F -0.123 7.123 23 C -0.084 4.084 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.873 -2.312 -15.547 16.456 hybrid contribution 0.930 -0.196 0.789 1.235 sum -3.943 -2.508 -14.758 15.480 Atomic orbital electron populations 1.22230 0.96720 1.01391 1.02380 1.21463 0.93532 0.84308 1.02659 1.48267 1.62525 1.13204 1.07884 1.19280 0.96283 0.93671 0.78116 1.21456 0.96868 1.31784 1.06183 0.92467 1.24931 0.97809 0.94938 0.96433 1.69941 1.35578 1.33487 1.14338 0.86459 0.84727 0.78049 0.78288 1.19825 1.20899 1.20954 1.18285 0.79707 0.86616 0.84225 1.90856 1.45866 1.17230 1.86749 1.23446 1.03101 1.00960 0.93419 1.22211 0.95455 0.92169 0.97623 1.18622 0.96060 0.92725 0.95794 1.21159 0.98473 0.94460 0.99319 1.20716 0.99018 0.93712 0.99151 1.21093 0.97300 1.00516 0.97902 1.17481 0.93578 0.89288 0.92924 1.91477 1.72647 1.77046 1.71096 1.21059 0.99691 0.91561 0.96103 0.92094 0.92970 0.92197 0.91540 0.90015 0.93827 0.95057 0.92788 0.85049 0.84788 0.85792 0.85560 0.85443 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.10 1.66 5.88 -4.04 -0.02 1.63 16 3 N -0.59 -12.39 2.46 -176.70 -0.43 -12.83 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 5 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.52 10.75 6.65 -12.96 -0.09 10.67 16 14 O -0.53 -12.87 11.74 5.20 0.06 -12.81 16 15 C -0.19 -2.80 9.14 -37.50 -0.34 -3.15 16 16 C -0.05 -0.72 9.81 -37.16 -0.36 -1.09 16 17 C -0.03 -0.49 4.53 -105.07 -0.48 -0.97 16 18 C -0.12 -1.57 9.79 -39.11 -0.38 -1.96 16 19 C -0.11 -1.42 10.03 -39.66 -0.40 -1.82 16 20 C -0.15 -2.22 10.02 -39.40 -0.39 -2.61 16 21 C 0.09 1.52 7.29 -39.48 -0.29 1.24 16 22 F -0.14 -2.68 17.26 2.25 0.04 -2.64 16 23 C -0.07 -1.15 6.58 -39.04 -0.26 -1.41 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.87 6.02 -51.93 -0.31 0.55 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.13 1.52 6.15 -52.49 -0.32 1.20 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.13 2.31 7.03 -52.49 -0.37 1.94 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -33.81 321.11 -7.59 -41.40 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.73 Total: -0.34 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.08 Total: -8.57 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.30 Total: -39.05 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.06 Total: -12.81 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.81 -7.59 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492238192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.617 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds