Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47302 * 2 1 4 4 C 1.46501 * 120.00235 * 89.99746 * 3 2 1 5 5 C 1.50705 * 109.47028 * 89.99715 * 4 3 2 6 6 H 1.08000 * 119.99692 * 0.02562 * 5 4 3 7 7 C 1.37869 * 119.99932 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00311 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00135 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47441 * 119.99823 * 9 7 5 12 12 H 1.48498 * 109.47348 * 240.00191 * 9 7 5 13 13 C 1.34776 * 120.00208 * 269.99980 * 3 2 1 14 14 O 1.21693 * 120.00258 * 180.02562 * 13 3 2 15 15 C 1.46431 * 119.99733 * 359.97438 * 13 3 2 16 16 C 1.34801 * 120.00025 * 173.23284 * 15 13 3 17 17 C 1.47210 * 120.00232 * 349.02619 * 16 15 13 18 18 C 1.39863 * 120.15863 * 136.37340 * 17 16 15 19 19 C 1.37878 * 119.87775 * 179.97438 * 18 17 16 20 20 C 1.38385 * 120.19683 * 359.97438 * 19 18 17 21 21 C 1.38593 * 120.32341 * 0.02562 * 20 19 18 22 22 F 1.35101 * 119.94158 * 180.02562 * 21 20 19 23 23 C 1.38148 * 120.11855 * 359.74375 * 21 20 19 24 24 H 1.08999 * 109.47048 * 300.00050 * 1 2 3 25 25 H 1.09003 * 109.46773 * 59.99863 * 1 2 3 26 26 H 1.09002 * 109.46851 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46918 * 239.99474 * 2 1 3 28 28 H 1.09003 * 109.46773 * 120.00137 * 2 1 3 29 29 H 1.08994 * 109.47642 * 209.99912 * 4 3 2 30 30 H 1.09001 * 109.47208 * 330.00322 * 4 3 2 31 31 H 0.97004 * 120.00586 * 179.97438 * 8 7 5 32 32 H 1.08002 * 120.00381 * 353.22691 * 15 13 3 33 33 H 1.08001 * 120.00166 * 169.03016 * 16 15 13 34 34 H 1.07995 * 120.05790 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.90369 * 180.02562 * 19 18 17 36 36 H 1.08007 * 119.83738 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.09930 * 180.24951 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6859 1.8349 1.7038 6 1 4.3429 1.2307 1.0958 7 6 4.1494 2.3904 2.8774 8 7 3.3495 3.1266 3.6175 9 14 5.9138 2.0974 3.4165 10 1 6.6015 1.2421 2.4160 11 1 6.6212 3.3986 3.5241 12 1 5.9218 1.4189 4.7374 13 6 2.2431 2.0165 -1.1672 14 8 2.6492 3.1637 -1.1672 15 6 1.9995 1.3260 -2.4353 16 6 2.0922 2.0006 -3.5987 17 6 2.1973 3.4690 -3.5918 18 6 3.1124 4.1119 -4.4316 19 6 3.2057 5.4874 -4.4209 20 6 2.3962 6.2334 -3.5822 21 6 1.4865 5.6049 -2.7466 22 9 0.6997 6.3407 -1.9313 23 6 1.3787 4.2276 -2.7501 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0957 3.1410 1.1384 30 1 1.5818 1.6877 2.0284 31 1 3.6755 3.5171 4.4434 32 1 1.7458 0.2763 -2.4386 33 1 2.0892 1.4639 -4.5359 34 1 3.7443 3.5319 -5.0879 35 1 3.9119 5.9843 -5.0695 36 1 2.4738 7.3107 -3.5788 37 1 0.6669 3.7384 -2.1018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492238192.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -48.191036 kcal Electronic energy + Delta-G solvation = -21363.911688 eV Core-core repulsion = 18020.743321 eV Total energy + Delta-G solvation = -3343.168367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.86423 -41.04422 -39.50544 -36.96629 -35.05935 -34.59421 -31.63319 -31.45228 -30.81682 -29.01703 -25.88581 -24.52988 -24.02781 -23.36555 -21.88371 -19.51392 -18.81437 -18.45818 -17.73981 -17.20266 -17.12360 -16.87449 -16.57414 -16.16613 -15.75661 -15.13131 -14.77991 -14.64153 -14.53144 -14.21014 -14.04523 -13.65036 -13.52636 -13.26427 -13.09893 -13.03182 -12.71008 -12.63823 -12.49701 -12.19551 -12.00934 -11.87837 -11.70721 -10.87167 -10.68147 -10.56101 -9.67255 -9.27227 -9.13860 -8.24276 -6.40015 -0.24651 0.36592 0.91446 1.32967 1.35644 1.47656 2.28734 2.49828 2.53635 2.78397 3.04533 3.38869 3.72728 3.83452 3.93446 4.09387 4.18567 4.27760 4.42907 4.45511 4.54501 4.67985 4.85855 4.93163 4.98259 5.02639 5.11304 5.13643 5.18606 5.23232 5.32719 5.38673 5.48593 5.56539 5.64056 5.87808 6.03777 6.04941 6.69113 6.85680 7.26994 7.55290 8.82553 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.005877 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.355885 B = 4763.186309 C = 5514.878233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.600 5.600 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.511 3.489 14 O -0.580 6.580 15 C -0.206 4.206 16 C -0.024 4.024 17 C -0.053 4.053 18 C -0.110 4.110 19 C -0.103 4.103 20 C -0.155 4.155 21 C 0.045 3.955 22 F -0.163 7.163 23 C -0.087 4.087 24 H 0.032 0.968 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.068 0.932 29 H -0.009 1.009 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.172 0.828 33 H 0.192 0.808 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.146 0.854 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.338 -5.206 -18.820 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.330 5.330 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.303 3.697 14 O -0.462 6.462 15 C -0.226 4.226 16 C -0.044 4.044 17 C -0.053 4.053 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.174 4.174 21 C 0.026 3.974 22 F -0.142 7.142 23 C -0.107 4.107 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.010 0.990 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.190 0.810 33 H 0.209 0.791 34 H 0.183 0.817 35 H 0.185 0.815 36 H 0.164 0.836 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.191 -4.525 -18.567 19.375 hybrid contribution 0.371 0.557 1.641 1.773 sum -2.820 -3.968 -16.926 17.612 Atomic orbital electron populations 1.22158 0.94774 1.03468 1.01406 1.21785 0.95118 0.81487 1.03969 1.48276 1.63234 1.15127 1.06341 1.18627 0.95228 0.91249 0.80601 1.21723 0.97768 1.31777 1.06411 0.92839 1.25902 1.02534 0.94471 0.96478 1.70072 1.37810 1.34359 1.14849 0.85350 0.78863 0.77989 0.78506 1.18885 1.20901 1.19253 1.19321 0.78378 0.86255 0.85773 1.90830 1.48136 1.19596 1.87681 1.23368 1.06127 1.02566 0.90514 1.22790 0.91478 0.90868 0.99222 1.19063 0.96196 0.94358 0.95720 1.21686 0.97499 0.95033 0.98525 1.21255 0.98459 0.93921 0.98408 1.21435 0.96678 1.01812 0.97472 1.17991 0.95199 0.89775 0.94432 1.91412 1.73418 1.77436 1.71963 1.21047 1.00698 0.91933 0.96983 0.94859 0.92211 0.88436 0.87523 0.91297 0.99047 0.96533 0.92470 0.81033 0.79068 0.81748 0.81501 0.83643 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 10.24 71.98 0.74 -3.35 16 2 C 0.10 3.04 5.88 86.38 0.51 3.55 16 3 N -0.60 -26.10 2.46 -831.17 -2.04 -28.14 16 4 C 0.26 14.88 5.16 85.63 0.44 15.32 16 5 C -0.54 -32.00 9.39 25.60 0.24 -31.76 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -58.35 13.29 21.44 0.28 -58.06 16 9 Si 0.97 46.13 29.54 68.60 2.03 48.16 16 10 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.51 21.42 6.65 86.38 0.57 21.99 16 14 O -0.58 -29.75 11.74 -4.32 -0.05 -29.80 16 15 C -0.21 -5.59 9.14 23.62 0.22 -5.38 16 16 C -0.02 -0.55 9.81 23.84 0.23 -0.32 16 17 C -0.05 -1.56 4.53 -20.15 -0.09 -1.66 16 18 C -0.11 -2.59 9.79 22.58 0.22 -2.37 16 19 C -0.10 -2.41 10.03 22.22 0.22 -2.18 16 20 C -0.16 -4.57 10.02 22.39 0.22 -4.34 16 21 C 0.05 1.68 7.29 22.33 0.16 1.84 16 22 F -0.16 -6.67 17.26 44.97 0.78 -5.89 16 23 C -0.09 -3.24 6.58 22.62 0.15 -3.09 16 24 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.11 2.43 6.02 -2.39 -0.01 2.41 16 28 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 29 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 30 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.17 3.17 6.15 -2.91 -0.02 3.15 16 33 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.10 4.01 7.03 -2.91 -0.02 3.99 16 Total: -1.00 -81.54 321.11 6.36 -75.18 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.07 Total: 9.57 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.30 Total: -11.01 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.76 Total: -86.20 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.05 Total: -29.80 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.78 Total: -5.89 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -81.54 6.36 -75.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492238192.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.985 kcal (2) G-P(sol) polarization free energy of solvation -81.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds