Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47370 * 2 1 4 4 C 1.36733 * 119.99882 * 264.67318 * 3 2 1 5 5 H 1.08004 * 119.99664 * 142.26317 * 4 3 2 6 6 C 1.39101 * 120.00098 * 322.26082 * 4 3 2 7 7 N 1.31335 * 120.00040 * 339.26310 * 6 4 3 8 8 Si 1.86799 * 120.00072 * 159.26308 * 6 4 3 9 9 H 1.48504 * 109.47486 * 59.99915 * 8 6 4 10 10 H 1.48499 * 109.47412 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47183 * 299.99931 * 8 6 4 12 12 C 1.34779 * 120.00159 * 84.67108 * 3 2 1 13 13 O 1.21769 * 119.99889 * 180.02562 * 12 3 2 14 14 C 1.46152 * 120.00182 * 0.02562 * 12 3 2 15 15 C 1.35043 * 120.00296 * 174.14155 * 14 12 3 16 16 C 1.47049 * 120.00058 * 345.25226 * 15 14 12 17 17 C 1.39957 * 120.14569 * 317.93100 * 16 15 14 18 18 C 1.37757 * 119.84689 * 179.69756 * 17 16 15 19 19 C 1.38712 * 120.15375 * 0.57734 * 18 17 16 20 20 F 1.35097 * 119.85632 * 179.74372 * 19 18 17 21 21 C 1.38677 * 120.29549 * 359.71975 * 19 18 17 22 22 C 1.50700 * 119.92776 * 180.02562 * 21 19 18 23 23 C 1.37803 * 120.14423 * 359.97438 * 21 19 18 24 24 H 1.08997 * 109.47057 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47485 * 300.00385 * 1 2 3 26 26 H 1.08997 * 109.46742 * 60.00501 * 1 2 3 27 27 H 1.08996 * 109.47485 * 239.99615 * 2 1 3 28 28 H 1.09003 * 109.47160 * 119.99577 * 2 1 3 29 29 H 0.96995 * 119.99957 * 179.97438 * 7 6 4 30 30 H 1.08002 * 119.99970 * 353.86981 * 14 12 3 31 31 H 1.07996 * 120.00117 * 165.24882 * 15 14 12 32 32 H 1.07997 * 120.07686 * 359.97438 * 17 16 15 33 33 H 1.07997 * 119.92501 * 180.31983 * 18 17 16 34 34 H 1.09003 * 109.46856 * 269.97816 * 22 21 19 35 35 H 1.08995 * 109.47185 * 29.97332 * 22 21 19 36 36 H 1.09001 * 109.47018 * 149.97787 * 22 21 19 37 37 H 1.08010 * 120.07092 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3499 1.9891 -1.1790 5 1 2.1246 3.0346 -1.3295 6 6 2.9773 1.2610 -2.1846 7 7 3.6121 0.1491 -1.8918 8 14 2.9172 1.8646 -3.9513 9 1 3.5437 3.2083 -4.0370 10 1 3.6559 0.9169 -4.8238 11 1 1.5033 1.9484 -4.3979 12 6 2.1408 2.0527 1.1622 13 8 2.5463 3.2009 1.1621 14 6 1.7869 1.4028 2.4225 15 6 2.0202 2.0309 3.5950 16 6 2.9091 3.2016 3.6378 17 6 4.1028 3.2048 2.9072 18 6 4.9279 4.3073 2.9468 19 6 4.5838 5.4077 3.7180 20 9 5.4000 6.4836 3.7566 21 6 3.4055 5.4087 4.4493 22 6 3.0396 6.6089 5.2839 23 6 2.5680 4.3149 4.4136 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0493 -0.3588 -2.5931 30 1 1.3348 0.4220 2.4160 31 1 1.5539 1.6736 4.5012 32 1 4.3743 2.3468 2.3101 33 1 5.8468 4.3132 2.3794 34 1 3.4486 6.4919 6.2875 35 1 3.4511 7.5086 4.8265 36 1 1.9544 6.6942 5.3414 37 1 1.6508 4.3168 4.9839 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493653345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = -29.216255 kcal Electronic energy + Delta-G solvation = -21325.594882 eV Core-core repulsion = 17983.249324 eV Total energy + Delta-G solvation = -3342.345559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.49194 -39.22745 -38.06019 -35.18577 -33.29867 -32.26262 -31.86046 -29.50663 -29.08954 -26.54037 -25.41015 -23.06542 -22.21192 -22.02090 -20.36806 -17.86134 -17.16999 -16.90570 -16.44059 -15.88993 -15.26703 -15.10425 -14.61195 -14.00466 -13.91328 -13.35674 -13.18580 -13.09245 -12.92248 -12.84501 -12.71730 -12.56077 -12.02750 -11.83773 -11.67279 -11.38941 -11.18529 -11.06887 -10.84293 -10.54938 -10.49915 -10.40837 -10.14482 -9.18822 -8.98285 -8.58663 -8.30974 -7.49028 -7.34102 -6.42430 -4.00439 1.19070 1.80959 2.33043 3.17428 3.21168 3.24943 4.09572 4.16298 4.40201 4.70610 4.86198 5.02333 5.05388 5.13738 5.26115 5.52681 5.58328 5.70492 5.78304 5.81522 5.90081 5.99264 5.99529 6.16081 6.23089 6.38385 6.42883 6.48357 6.61088 6.68016 6.76195 6.83160 6.88556 7.14172 7.17591 7.41935 7.50339 8.21757 8.47374 9.15144 9.34258 10.00838 10.60849 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.005249 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.656472 B = 5333.208688 C = 6212.989275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.424 5.424 4 C -0.305 4.305 5 H 0.092 0.908 6 C 0.039 3.961 7 N -0.863 5.863 8 Si 0.918 3.082 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.468 3.532 13 O -0.570 6.570 14 C -0.168 4.168 15 C -0.086 4.086 16 C -0.046 4.046 17 C -0.006 4.006 18 C -0.159 4.159 19 C 0.090 3.910 20 F -0.149 7.149 21 C -0.140 4.140 22 C -0.105 4.105 23 C -0.086 4.086 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.270 0.730 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 1.258 10.372 10.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.140 5.140 4 C -0.433 4.433 5 H 0.109 0.891 6 C -0.166 4.166 7 N -0.500 5.500 8 Si 0.744 3.256 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.259 3.741 13 O -0.456 6.456 14 C -0.189 4.189 15 C -0.107 4.107 16 C -0.047 4.047 17 C -0.024 4.024 18 C -0.178 4.178 19 C 0.071 3.929 20 F -0.127 7.127 21 C -0.141 4.141 22 C -0.162 4.162 23 C -0.105 4.105 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.358 1.686 10.193 10.597 hybrid contribution 0.018 0.125 -1.106 1.113 sum -2.341 1.810 9.087 9.556 Atomic orbital electron populations 1.22232 0.98000 1.00413 1.01710 1.21579 0.91818 0.85641 1.03772 1.43475 1.53861 1.11467 1.05244 1.19391 1.36714 0.97020 0.90189 0.89070 1.25415 0.94123 0.96427 1.00662 1.69890 1.29708 1.16529 1.33863 0.86136 0.78607 0.78923 0.81940 1.19617 1.20885 1.19796 1.18230 0.83870 0.88105 0.83931 1.90719 1.50415 1.18170 1.86274 1.23479 1.02071 0.99451 0.93915 1.22012 0.96889 0.94542 0.97236 1.18836 0.94555 0.94341 0.96918 1.21009 0.91659 0.97552 0.92206 1.20874 1.02114 0.93470 1.01344 1.17601 0.90023 0.84520 1.00741 1.91409 1.71850 1.54025 1.95459 1.19559 0.94884 0.97917 1.01696 1.20616 1.01747 0.95246 0.98608 1.20836 0.98508 0.92070 0.99042 0.93051 0.93676 0.92446 0.87502 0.93101 0.91978 0.86018 0.85768 0.85620 0.85477 0.91601 0.91747 0.91495 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.05 37.16 0.37 -2.50 16 2 C 0.10 2.01 5.27 -4.04 -0.02 1.99 16 3 N -0.42 -10.40 2.52 -116.49 -0.29 -10.70 16 4 C -0.30 -8.23 8.89 -15.05 -0.13 -8.36 16 5 H 0.09 2.60 7.77 -52.48 -0.41 2.20 16 6 C 0.04 1.00 4.92 -17.44 -0.09 0.92 16 7 N -0.86 -22.55 11.51 55.50 0.64 -21.91 16 8 Si 0.92 20.19 29.60 -169.99 -5.03 15.16 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 C 0.47 11.07 6.53 -13.08 -0.09 10.99 16 13 O -0.57 -15.11 12.28 5.13 0.06 -15.05 16 14 C -0.17 -3.11 8.57 -37.54 -0.32 -3.43 16 15 C -0.09 -1.41 9.81 -37.15 -0.36 -1.77 16 16 C -0.05 -0.83 4.51 -105.05 -0.47 -1.31 16 17 C -0.01 -0.11 6.71 -39.11 -0.26 -0.38 16 18 C -0.16 -2.98 10.01 -39.58 -0.40 -3.38 16 19 C 0.09 1.61 7.25 -39.24 -0.28 1.32 16 20 F -0.15 -2.56 16.46 2.25 0.04 -2.53 16 21 C -0.14 -2.25 5.88 -104.62 -0.62 -2.87 16 22 C -0.11 -1.32 9.83 36.01 0.35 -0.97 16 23 C -0.09 -1.39 9.44 -39.11 -0.37 -1.76 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.74 7.45 -51.93 -0.39 0.35 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.11 2.47 5.58 -51.93 -0.29 2.18 16 28 H 0.05 0.97 6.50 -51.93 -0.34 0.63 16 29 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.12 1.94 6.04 -52.49 -0.32 1.62 16 31 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.13 2.66 7.07 -52.49 -0.37 2.29 16 33 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.81 7.63 -51.93 -0.40 0.41 16 36 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -29.83 314.36 -7.13 -36.96 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.60 Total: 4.83 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.69 Total: -11.51 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.35 Total: -32.60 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.06 Total: -15.05 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.83 -7.13 -36.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493653345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.742 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds