Wall clock time and date at job start Mon Mar 30 2020 01:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47052 * 2 1 4 4 C 1.37100 * 119.99468 * 264.75381 * 3 2 1 5 5 H 1.08002 * 119.99872 * 138.83066 * 4 3 2 6 6 C 1.38939 * 120.00188 * 318.82395 * 4 3 2 7 7 N 1.31420 * 120.00144 * 341.84441 * 6 4 3 8 8 Si 1.86806 * 120.00013 * 161.84360 * 6 4 3 9 9 H 1.48492 * 109.47058 * 60.00244 * 8 6 4 10 10 H 1.48504 * 109.46693 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46948 * 299.99849 * 8 6 4 12 12 C 1.34775 * 119.99938 * 84.74702 * 3 2 1 13 13 O 1.21298 * 119.99345 * 179.97438 * 12 3 2 14 14 C 1.50699 * 120.00178 * 0.28028 * 12 3 2 15 15 C 1.50699 * 109.46675 * 179.71875 * 14 12 3 16 16 C 1.32591 * 119.99609 * 125.00400 * 15 14 12 17 17 C 1.47787 * 119.99696 * 179.97438 * 16 15 14 18 18 C 1.39528 * 120.15594 * 359.71811 * 17 16 15 19 19 C 1.37949 * 119.88076 * 179.74672 * 18 17 16 20 20 C 1.38382 * 120.19400 * 0.55390 * 19 18 17 21 21 C 1.38271 * 120.31507 * 359.70015 * 20 19 18 22 22 C 1.38246 * 120.11654 * 0.02562 * 21 20 19 23 23 F 1.35094 * 120.10309 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.47342 * 300.00167 * 1 2 3 25 25 H 1.08999 * 109.46876 * 60.00633 * 1 2 3 26 26 H 1.09005 * 109.46739 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47140 * 239.99319 * 2 1 3 28 28 H 1.09005 * 109.46582 * 119.99711 * 2 1 3 29 29 H 0.96996 * 120.00169 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47082 * 299.71832 * 14 12 3 31 31 H 1.08998 * 109.46932 * 59.72127 * 14 12 3 32 32 H 1.07999 * 120.00870 * 304.99498 * 15 14 12 33 33 H 1.07993 * 119.99852 * 359.97438 * 16 15 14 34 34 H 1.08000 * 120.06064 * 0.02934 * 18 17 16 35 35 H 1.08001 * 119.90558 * 180.25542 * 19 18 17 36 36 H 1.08001 * 119.84523 * 179.72326 * 20 19 18 37 37 H 1.07999 * 119.94348 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3492 1.9912 -1.1824 5 1 2.0743 3.0215 -1.3539 6 6 3.0382 1.2841 -2.1600 7 7 3.6803 0.1818 -1.8441 8 14 3.0517 1.9001 -3.9235 9 1 3.6550 3.2562 -3.9695 10 1 3.8517 0.9742 -4.7650 11 1 1.6599 1.9598 -4.4377 12 6 2.1422 2.0522 1.1623 13 8 2.5470 3.1956 1.1622 14 6 1.7844 1.3795 2.4625 15 6 2.0173 2.3360 3.6035 16 6 1.0344 2.6094 4.4504 17 6 1.2629 3.5470 5.5697 18 6 2.5134 4.1417 5.7417 19 6 2.7189 5.0200 6.7854 20 6 1.6921 5.3040 7.6685 21 6 0.4512 4.7152 7.5087 22 6 0.2293 3.8374 6.4640 23 9 -0.9829 3.2619 6.3085 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 4.1616 -0.3117 -2.5265 30 1 0.7349 1.0859 2.4429 31 1 2.4068 0.4949 2.5972 32 1 2.9847 2.7986 3.7316 33 1 0.0669 2.1471 4.3222 34 1 3.3176 3.9183 5.0564 35 1 3.6855 5.4837 6.9165 36 1 1.8605 5.9891 8.4863 37 1 -0.3460 4.9415 8.2013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495233571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:34 Heat of formation + Delta-G solvation = -42.076158 kcal Electronic energy + Delta-G solvation = -20497.365012 eV Core-core repulsion = 17154.461807 eV Total energy + Delta-G solvation = -3342.903206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.85819 -39.09100 -38.54258 -35.24778 -34.49023 -32.12741 -30.86981 -30.54626 -29.42709 -27.20530 -24.70646 -23.31019 -22.36960 -22.01076 -19.59610 -18.63229 -17.67222 -16.77500 -16.29802 -16.11009 -15.68142 -15.56604 -15.02562 -14.55078 -14.21984 -14.13570 -13.56369 -13.18214 -12.97747 -12.83201 -12.69290 -12.49193 -12.13754 -11.80093 -11.73596 -11.34251 -11.09580 -11.01421 -10.94326 -10.81860 -10.39003 -10.32163 -10.19266 -10.06773 -8.91384 -8.90397 -8.45965 -7.93109 -7.41864 -6.31677 -4.00221 0.83831 1.15043 2.60153 3.20406 3.25524 3.29311 3.72722 3.92249 4.17736 4.20959 4.63362 4.67637 4.86042 4.96050 5.03205 5.14809 5.24253 5.37195 5.59664 5.78004 5.84994 5.87867 5.89223 5.96543 6.07723 6.14548 6.19746 6.23245 6.35734 6.36727 6.51520 6.78928 6.86264 6.90075 6.95886 7.21395 7.58854 8.30524 8.52374 9.20303 9.40423 10.02595 10.73547 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.003567 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.064106 B = 7848.314107 C = 8341.760893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.442 5.442 4 C -0.310 4.310 5 H 0.087 0.913 6 C 0.039 3.961 7 N -0.873 5.873 8 Si 0.918 3.082 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.466 3.534 13 O -0.579 6.579 14 C -0.117 4.117 15 C -0.070 4.070 16 C -0.160 4.160 17 C -0.063 4.063 18 C -0.093 4.093 19 C -0.125 4.125 20 C -0.105 4.105 21 C -0.153 4.153 22 C 0.095 3.905 23 F -0.138 7.138 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.049 0.951 29 H 0.268 0.732 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 2.059 14.948 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.161 5.161 4 C -0.438 4.438 5 H 0.105 0.895 6 C -0.165 4.165 7 N -0.510 5.510 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.254 3.746 13 O -0.462 6.462 14 C -0.156 4.156 15 C -0.088 4.088 16 C -0.178 4.178 17 C -0.064 4.064 18 C -0.111 4.111 19 C -0.143 4.143 20 C -0.123 4.123 21 C -0.172 4.172 22 C 0.075 3.925 23 F -0.117 7.117 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.121 0.879 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.258 2.443 14.813 15.605 hybrid contribution -0.237 -0.027 -0.914 0.945 sum -4.495 2.416 13.899 14.806 Atomic orbital electron populations 1.22233 0.98244 1.00383 1.01566 1.21467 0.91596 0.85640 1.03472 1.43447 1.56153 1.11724 1.04817 1.19334 1.34866 0.98557 0.91012 0.89543 1.25414 0.94024 0.96549 1.00537 1.69917 1.29451 1.17582 1.34094 0.86137 0.78371 0.78853 0.82164 1.19731 1.20980 1.19886 1.20202 0.82001 0.87892 0.84537 1.90525 1.50081 1.18752 1.86886 1.20880 1.03001 0.98600 0.93169 1.23132 0.98833 0.94564 0.92302 1.21365 0.99852 1.00619 0.95976 1.19128 0.93064 0.98669 0.95537 1.21332 0.96143 0.95804 0.97787 1.21146 0.99539 0.98504 0.95158 1.20989 0.92266 0.99557 0.99466 1.21033 0.99015 0.98776 0.98383 1.17765 0.80764 0.96829 0.97094 1.91468 1.41844 1.83034 1.95337 0.93853 0.92412 0.93062 0.87866 0.93302 0.92233 0.89648 0.88560 0.86357 0.86222 0.84486 0.85345 0.85326 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.15 37.16 0.38 -2.57 16 2 C 0.10 2.18 5.41 -4.04 -0.02 2.16 16 3 N -0.44 -11.13 2.50 -114.81 -0.29 -11.42 16 4 C -0.31 -8.60 8.84 -14.94 -0.13 -8.74 16 5 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 6 C 0.04 1.03 4.95 -17.47 -0.09 0.95 16 7 N -0.87 -23.50 11.61 55.50 0.64 -22.85 16 8 Si 0.92 20.64 29.59 -169.99 -5.03 15.61 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 C 0.47 11.33 7.59 -10.99 -0.08 11.24 16 13 O -0.58 -16.17 15.95 5.54 0.09 -16.09 16 14 C -0.12 -2.12 4.76 -29.04 -0.14 -2.26 16 15 C -0.07 -1.19 8.18 -36.21 -0.30 -1.48 16 16 C -0.16 -2.49 9.31 -37.58 -0.35 -2.84 16 17 C -0.06 -0.91 5.87 -104.95 -0.62 -1.53 16 18 C -0.09 -1.20 9.40 -39.21 -0.37 -1.57 16 19 C -0.13 -1.33 10.03 -39.63 -0.40 -1.73 16 20 C -0.10 -1.02 10.04 -39.52 -0.40 -1.42 16 21 C -0.15 -1.68 10.01 -39.57 -0.40 -2.08 16 22 C 0.09 1.29 7.28 -39.02 -0.28 1.00 16 23 F -0.14 -1.97 16.62 2.25 0.04 -1.93 16 24 H 0.04 0.72 6.62 -51.93 -0.34 0.37 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 28 H 0.05 0.94 6.65 -51.93 -0.35 0.59 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.09 1.40 6.23 -51.93 -0.32 1.07 16 31 H 0.10 1.61 7.41 -51.93 -0.38 1.22 16 32 H 0.12 2.00 6.04 -52.49 -0.32 1.68 16 33 H 0.12 1.78 7.55 -52.49 -0.40 1.38 16 34 H 0.14 1.72 6.17 -52.49 -0.32 1.40 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -31.42 318.40 -7.33 -38.75 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.39 Total: 3.99 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.19 Total: -10.86 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.36 Total: -34.27 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.42 -7.33 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495233571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.327 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds